Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 2.6e-33 144.8 75 100.0
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 7.9e-30 133.3 75 93.3
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 1.4e-29 132.5 73 94.5
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 1.1e-28 129.4 75 92.0
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 4.4e-28 127.5 71 93.0
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 2.8e-27 124.8 75 89.3
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 5.3e-26 120.6 71 87.3
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 4.5e-25 117.5 71 83.1
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 1.3e-24 115.9 73 83.6
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 1.3e-24 115.9 73 83.6
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 2.2e-24 115.2 75 82.7
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 2.9e-24 114.8 71 81.7
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 2.9e-24 114.8 70 80.0
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 5.0e-24 114.0 70 78.6
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 6.5e-24 113.6 74 82.4
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 8.5e-24 113.2 73 82.2
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 8.5e-24 113.2 71 81.7
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 1.4e-23 112.5 75 82.7
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 1.4e-23 112.5 76 80.3
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.9e-23 112.1 78 78.2
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 1.9e-23 112.1 71 84.5
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.5e-23 111.7 73 79.5
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.5e-23 111.7 73 82.2
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 2.5e-23 111.7 72 81.9
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 2.5e-23 111.7 75 80.0
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 3.2e-23 111.3 60 91.7
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 3.2e-23 111.3 71 83.1
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 3.2e-23 111.3 73 79.5
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 4.2e-23 110.9 78 76.9
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 4.2e-23 110.9 72 80.6
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 4.2e-23 110.9 72 80.6
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 4.2e-23 110.9 73 79.5
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 7.2e-23 110.2 73 78.1
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 7.2e-23 110.2 72 81.9
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 7.2e-23 110.2 72 80.6
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 7.2e-23 110.2 72 80.6
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 9.4e-23 109.8 76 78.9
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.2e-22 109.4 69 79.7
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 1.6e-22 109.0 76 76.3
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 2.1e-22 108.6 67 82.1
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 2.7e-22 108.2 65 87.7
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 2.7e-22 108.2 67 82.1
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 2.7e-22 108.2 75 77.3
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 3.6e-22 107.8 61 86.9
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 4.7e-22 107.5 70 77.1
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 4.7e-22 107.5 63 82.5
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 4.7e-22 107.5 72 80.6
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 6.1e-22 107.1 70 78.6
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 6.1e-22 107.1 70 81.4
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 6.1e-22 107.1 61 85.2
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 6.1e-22 107.1 73 74.0
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 6.1e-22 107.1 72 73.6
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 6.1e-22 107.1 70 77.1
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 8.0e-22 106.7 61 85.2
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.0e-21 106.3 73 74.0
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 1.0e-21 106.3 79 73.4
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.0e-21 106.3 73 72.6
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 1.4e-21 105.9 65 80.0
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 1.4e-21 105.9 67 79.1
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 1.8e-21 105.5 68 79.4
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 1.8e-21 105.5 70 80.0
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 3.0e-21 104.8 68 79.4
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 3.0e-21 104.8 63 82.5
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 3.0e-21 104.8 73 74.0
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 3.9e-21 104.4 70 80.0
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 3.9e-21 104.4 73 74.0
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 5.2e-21 104.0 68 77.9
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 5.2e-21 104.0 75 73.3
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 6.7e-21 103.6 65 76.9
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 8.8e-21 103.2 72 73.6
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 1.1e-20 102.8 73 68.5
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 1.1e-20 102.8 69 79.7
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 1.5e-20 102.4 72 75.0
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 2.0e-20 102.1 78 73.1
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.0e-20 102.1 60 81.7
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.0e-20 102.1 62 79.0
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 2.6e-20 101.7 72 72.2
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 2.6e-20 101.7 71 73.2
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 3.3e-20 101.3 61 83.6
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 3.3e-20 101.3 58 86.2
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 3.3e-20 101.3 58 86.2
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 4.4e-20 100.9 72 69.4
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 4.4e-20 100.9 68 77.9
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 4.4e-20 100.9 68 75.0
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 5.7e-20 100.5 72 72.2
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 7.4e-20 100.1 72 72.2
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 9.7e-20 99.8 74 68.9
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 9.7e-20 99.8 71 73.2
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 1.3e-19 99.4 71 76.1
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 1.3e-19 99.4 71 76.1
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 1.3e-19 99.4 58 86.2
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.3e-19 99.4 71 76.1
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.3e-19 99.4 60 76.7
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 1.3e-19 99.4 68 73.5
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.3e-19 99.4 68 73.5
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.3e-19 99.4 68 73.5
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 1.3e-19 99.4 74 73.0
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 1.7e-19 99.0 63 74.6
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 2.2e-19 98.6 58 86.2
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 2.2e-19 98.6 69 71.0
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 3.7e-19 97.8 61 82.0
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 4.8e-19 97.4 58 84.5
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 4.8e-19 97.4 58 84.5
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 6.3e-19 97.1 67 71.6
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 6.3e-19 97.1 72 68.1
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 6.3e-19 97.1 71 67.6
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 6.3e-19 97.1 68 72.1
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 8.2e-19 96.7 68 77.9
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 8.2e-19 96.7 58 84.5
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 8.2e-19 96.7 58 75.9
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 8.2e-19 96.7 58 82.8
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 1.1e-18 96.3 63 77.8
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 1.1e-18 96.3 58 82.8
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 1.1e-18 96.3 58 82.8
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 1.1e-18 96.3 58 82.8
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 1.1e-18 96.3 58 82.8
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.1e-18 96.3 68 72.1
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 1.1e-18 96.3 55 87.3
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 1.4e-18 95.9 58 82.8
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 1.4e-18 95.9 72 72.2
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 3.1e-18 94.7 58 81.0
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 3.1e-18 94.7 73 68.5
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 3.1e-18 94.7 71 71.8
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 4.1e-18 94.4 58 77.6
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 4.1e-18 94.4 58 77.6
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 1.6e-17 92.4 58 79.3
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 2.6e-17 91.7 61 73.8
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 3.5e-17 91.3 58 75.9
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 3.5e-17 91.3 58 75.9
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.0e-16 89.7 56 78.6
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 2.2e-16 88.6 54 79.6
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 5.0e-16 87.4 57 73.7
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 8.5e-16 86.7 70 65.7
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.2e-14 82.8 68 61.8
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.2e-14 82.8 68 61.8
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 2.1e-14 82.0 68 61.8
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 2.1e-14 82.0 72 65.3
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 3.6e-14 81.3 55 72.7
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 3.6e-14 81.3 52 78.8
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 4.7e-14 80.9 70 62.9
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 1.0e-13 79.7 69 59.4
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 2.3e-13 78.6 72 54.2
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 3.0e-13 78.2 52 78.8
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 4.0e-13 77.8 56 69.6
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 4.0e-13 77.8 56 69.6
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 5.2e-13 77.4 63 63.5
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 5.2e-13 77.4 54 68.5
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 6.8e-13 77.0 49 79.6
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 1.2e-12 76.3 58 62.1
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 1.3e-11 72.8 62 58.1
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 1.3e-11 72.8 62 58.1
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 3.7e-11 71.2 54 68.5
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 8.3e-11 70.1 42 76.2
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 1.1e-10 69.7 73 53.4
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 5.0e-08 60.8 51 52.9
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 1.1e-07 59.7 34 82.4
Glyma.03G125300 Glycine max HOM05D004624 ORTHO05D005357 2.1e-06 55.5 35 80.0


User provided reference genes

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