Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0019140 Lotus japonicus HOM05D000089 ORTHO05D000726 1.5e-104 382.9 192 100.0
Lj3g0006272 Lotus japonicus HOM05D000089 ORTHO05D000726 1.7e-31 140.2 81 85.2
Medtr4g081440 Medicago truncatula HOM05D000089 ORTHO05D000726 1.9e-27 126.7 82 79.3
Ca_18839_v3 Cicer arietinum L. HOM05D000089 ORTHO05D000726 3.2e-27 125.9 82 79.3
Glyma.12G215800 Glycine max HOM05D000089 ORTHO05D000726 8.0e-26 121.3 120 56.7
TPR.G34084 Trifolium pratense HOM05D000089 ORTHO05D000726 8.0e-26 121.3 82 74.4
Phvul.005G090200 Phaseolus vulgaris HOM05D000089 ORTHO05D000726 1.0e-25 120.9 120 55.8
Phvul.011G142050 Phaseolus vulgaris HOM05D000089 ORTHO05D000726 1.4e-25 120.6 82 72.0
Psat7g161120 Pisum sativum HOM05D000089 ORTHO05D000726 8.8e-25 117.9 82 74.4
Glyma.06G265700 Glycine max HOM05D000089 ORTHO05D000726 1.2e-24 117.5 80 72.5
VMungo1080G0893 Vigna mungo HOM05D000089 ORTHO05D000726 2.6e-24 116.3 120 53.3
Lalb_Chr01g0009681 Lupinus albus HOM05D000089 ORTHO05D000726 5.7e-24 115.2 82 69.5
arahy.Tifrunner.gnm1.ann1.3U25U6 Arachis hypogaea HOM05D000089 ORTHO05D000726 9.8e-24 114.4 91 65.9
arahy.Tifrunner.gnm1.ann1.C470Y6 Arachis hypogaea HOM05D000089 ORTHO05D000726 1.3e-23 114.0 91 65.9
COL.COLO4_09550 Corchorus olitorius HOM05D000089 ORTHO05D000726 1.3e-23 114.0 92 60.9
Thecc.07G056000 Theobroma cacao HOM05D000089 ORTHO05D000726 4.8e-23 112.1 82 67.1
Hund23324 Selenicereus undatus HOM05D000089 ORTHO05D000726 1.8e-22 110.2 82 64.6
Gohir.A01G073300 Gossypium hirsutum HOM05D000089 ORTHO05D000726 5.4e-22 108.6 82 65.9
SalBow8G3861 Salvia bowleyana HOM05D000089 ORTHO05D000726 9.1e-22 107.8 82 65.9
Gohir.D01G059900 Gossypium hirsutum HOM05D000089 ORTHO05D000726 1.2e-21 107.5 82 65.9
Gorai.002G081300 Gossypium raimondii HOM05D000089 ORTHO05D000726 1.2e-21 107.5 82 65.9
Atru.chr2.3144 Acer truncatum HOM05D000089 ORTHO05D000726 2.7e-21 106.3 82 64.6
Dinv03950 Davidia involucrata HOM05D000089 ORTHO05D000726 3.5e-21 105.9 82 65.9
Manes.03G121400 Manihot esculenta HOM05D000089 ORTHO05D000726 3.5e-21 105.9 82 64.6
AUR62029244 Chenopodium quinoa HOM05D000089 ORTHO05D000726 4.5e-21 105.5 82 63.4
Duzib170G0913 Durio zibethinus HOM05D000089 ORTHO05D000726 5.9e-21 105.1 82 64.6
TWI38G0972 Tripterygium wilfordii HOM05D000089 ORTHO05D000726 5.9e-21 105.1 120 47.5
Haze_09586 Corylus avellana HOM05D000089 ORTHO05D000726 7.7e-21 104.8 92 56.5
Ciclev10008802m.g Citrus clementina HOM05D000089 ORTHO05D000726 1.0e-20 104.4 119 49.6
TAR626G1677 Trochodendron aralioides HOM05D000089 ORTHO05D000726 2.3e-20 103.2 92 55.4
PGSC0003DMG400021805 Solanum tuberosum HOM05D000089 ORTHO05D000726 2.9e-20 102.8 79 63.3
Cpa.g.sc97.90 Carica papaya HOM05D000089 ORTHO05D000726 3.8e-20 102.4 109 50.5
Nitab4.5_0000749g0060 Nicotiana tabacum HOM05D000089 ORTHO05D000726 3.8e-20 102.4 82 62.2
QL08p014030 Quercus lobata HOM05D000089 ORTHO05D000726 5.0e-20 102.1 82 61.0
CAN.G262.16 Capsicum annuum HOM05D000089 ORTHO05D000726 6.6e-20 101.7 82 62.2
CiPaw.12G125400 Carya illinoinensis HOM05D000089 ORTHO05D000726 1.1e-19 100.9 82 62.2
Migut.M01821 Erythranthe guttata HOM05D000089 ORTHO05D000726 1.1e-19 100.9 115 49.6
Lj1C861G10 Lonicera japonica HOM05D000089 ORTHO05D000726 1.1e-19 100.9 93 59.1
vmacro11778 Vaccinium macrocarpon HOM05D000089 ORTHO05D000726 1.1e-19 100.9 82 58.5
GSVIVG01014573001 Vitis vinifera HOM05D000089 ORTHO05D000726 2.5e-19 99.8 82 59.8
CSS0002940 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D000726 3.3e-19 99.4 82 62.2
CSS0026392 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D000726 3.3e-19 99.4 82 62.2
Lalb_Chr22g0357161 Lupinus albus HOM05D000089 ORTHO05D000726 3.3e-19 99.4 96 52.1
Sabra16G0282100 Salix brachista HOM05D000089 ORTHO05D000726 3.3e-19 99.4 79 62.0
Sopen12g001330 Solanum pennellii HOM05D000089 ORTHO05D000726 4.2e-19 99.0 79 59.5
Rhsim06G0188000 Rhododendron simsii HOM05D000089 ORTHO05D000726 5.5e-19 98.6 82 58.5
DCAR_008682 Daucus carota HOM05D000089 ORTHO05D000726 9.5e-19 97.8 81 60.5
Potri.001G415500 Populus trichocarpa HOM05D000089 ORTHO05D000726 9.5e-19 97.8 79 60.8
Solyc12g005350.2 Solanum lycopersicum HOM05D000089 ORTHO05D000726 9.5e-19 97.8 79 58.2
CSS0037948 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D000726 1.2e-18 97.4 82 61.0
Prupe.4G200500 Prunus persica HOM05D000089 ORTHO05D000726 1.6e-18 97.1 82 59.8
Lsat_1_v5_gn_9_95020 Lactuca sativa HOM05D000089 ORTHO05D000726 2.1e-18 96.7 82 58.5
PGR031G0977 Punica granatum HOM05D000089 ORTHO05D000726 2.1e-18 96.7 114 47.4
CSS0015968 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D000726 3.6e-18 95.9 82 61.0
Oeu004655.1 Olea europaea HOM05D000089 ORTHO05D000726 3.6e-18 95.9 82 58.5
Cfa020458 Carpinus fangiana HOM05D000089 ORTHO05D000726 4.7e-18 95.5 92 53.3
FAN11G2871 Fragaria x ananassa HOM05D000089 ORTHO05D000726 8.0e-18 94.7 83 59.0
Sp7g25170 Schrenkiella parvula HOM05D000089 ORTHO05D000726 1.4e-17 94.0 82 53.7
Sc16g0006600 Simmondsia chinensis HOM05D000089 ORTHO05D000726 1.8e-17 93.6 82 56.1
Peaxi162Scf00000g00839 Petunia axillaris HOM05D000089 ORTHO05D000726 2.3e-17 93.2 82 57.3
ECA240G4288 Erigeron canadensis HOM05D000089 ORTHO05D007761 3.0e-17 92.8 82 56.1
FvH4_3g21610 Fragaria vesca HOM05D000089 ORTHO05D000726 4.0e-17 92.4 82 58.5
A03p57160 Brassica napus HOM05D000089 ORTHO05D000726 5.2e-17 92.0 82 53.7
BraA03t14783Z Brassica rapa HOM05D000089 ORTHO05D000726 5.2e-17 92.0 82 53.7
Hma1.2p1_1054F.1_g252530 Hydrangea macrophylla HOM05D000089 ORTHO05D000726 5.2e-17 92.0 95 50.5
MD11G1229100 Malus domestica HOM05D000089 ORTHO05D000726 5.2e-17 92.0 82 57.3
RcHm_v2.0_Chr5g0037071 Rosa chinensis HOM05D000089 ORTHO05D000726 6.8e-17 91.7 82 56.1
FAN21G3550 Fragaria x ananassa HOM05D006094 ORTHO05D007761 8.9e-17 91.3 82 58.5
AL7G25570 Arabidopsis lyrata HOM05D000089 ORTHO05D000726 1.2e-16 90.9 115 47.0
BcaC06g32704 Brassica carinata HOM05D000089 ORTHO05D000726 1.2e-16 90.9 82 52.4
C07p55350 Brassica napus HOM05D000089 ORTHO05D000726 1.2e-16 90.9 82 52.4
BolC7t46017H Brassica oleracea HOM05D000089 ORTHO05D000726 1.2e-16 90.9 82 52.4
MD03G1214100 Malus domestica HOM05D000089 ORTHO05D000726 1.2e-16 90.9 82 57.3
PSO541G4700 Papaver somniferum HOM05D000089 ORTHO05D000726 1.2e-16 90.9 86 53.5
Eucgr.F03417 Eucalyptus grandis HOM05D000089 ORTHO05D000726 1.5e-16 90.5 82 56.1
Thhalv10025576m.g Eutrema salsugineum HOM05D000089 ORTHO05D000726 1.5e-16 90.5 82 51.2
HanXRQChr03g0076241 Helianthus annuus HOM05D000089 ORTHO05D000726 2.0e-16 90.1 96 51.0
AT4G27250 Arabidopsis thaliana HOM05D000089 ORTHO05D000726 2.6e-16 89.7 82 53.7
SGA_v2.0_scaffold34G13956 Striga asiatica HOM05D000089 ORTHO05D000726 3.4e-16 89.4 93 52.7
Actinidia09950 Actinidia chinensis HOM05D000089 ORTHO05D000726 5.7e-16 88.6 77 57.1
FAN25G3743 Fragaria x ananassa HOM05D000089 ORTHO05D000726 5.7e-16 88.6 73 61.6
PSO675G2137 Papaver somniferum HOM05D000089 ORTHO05D000726 5.7e-16 88.6 88 51.1
THA.LOC104809284 Tarenaya hassleriana HOM05D000089 ORTHO05D000726 9.8e-16 87.8 80 53.8
Aa31LG5G13920 Aethionema arabicum HOM05D003398 ORTHO05D003867 1.3e-15 87.4 82 50.0
Os06g0683100 Oryza sativa ssp. japonica HOM05D000089 ORTHO05D000726 1.3e-15 87.4 81 55.6
Sed0000227 Sechium edule HOM05D000089 ORTHO05D000726 1.3e-15 87.4 82 54.9
Carub.0007s1362 Capsella rubella HOM05D000089 ORTHO05D000726 1.7e-15 87.0 82 52.4
Cc05_g13110 Coffea canephora HOM05D000089 ORTHO05D000726 1.7e-15 87.0 77 54.5
CARHR234890 Cardamine hirsuta HOM05D000089 ORTHO05D000726 6.3e-15 85.1 82 51.2
FAN16G0577 Fragaria x ananassa HOM05D000089 ORTHO05D000726 1.8e-14 83.6 64 67.2
Zm00001eb225320 Zea mays HOM05D000089 ORTHO05D000726 1.8e-14 83.6 79 53.2
Nitab4.5_0023102g0010 Nicotiana tabacum HOM05D000089 ORTHO05D000726 3.1e-14 82.8 82 54.9
ClCG10G006300 Citrullus lanatus HOM05D000089 ORTHO05D000726 1.2e-13 80.9 91 47.3
MELO3C032187.2 Cucumis melo HOM05D000089 ORTHO05D000726 1.2e-13 80.9 91 45.1
CsaV3_3G005800 Cucumis sativus L. HOM05D000089 ORTHO05D000726 1.2e-13 80.9 91 46.2
Glyma.12G137001 Glycine max HOM05D000089 ORTHO05D000726 1.9e-11 73.6 53 77.4
SEGI_01274 Sequoiadendron giganteum HOM05D000089 ORTHO05D000726 2.8e-10 69.7 80 47.5
Ciclev10001757m.g Citrus clementina HOM05D000089 ORTHO05D000726 2.3e-09 66.6 76 46.1
Thecc.08G030600 Theobroma cacao HOM05D000089 ORTHO05D000726 5.2e-09 65.5 76 44.7
Potri.002G033600 Populus trichocarpa HOM05D000089 ORTHO05D000726 8.9e-09 64.7 78 44.9
QL02p009167 Quercus lobata HOM05D000089 ORTHO05D000726 8.9e-09 64.7 76 44.7
Sc02g0005910 Simmondsia chinensis HOM05D000089 ORTHO05D000726 8.9e-09 64.7 76 43.4
COL.COLO4_26275 Corchorus olitorius HOM05D000089 ORTHO05D000726 1.2e-08 64.3 76 43.4
Gohir.A05G192500 Gossypium hirsutum HOM05D000089 ORTHO05D000726 1.5e-08 63.9 76 43.4
Gorai.009G200600 Gossypium raimondii HOM05D000089 ORTHO05D000726 1.5e-08 63.9 76 43.4
Actinidia05138 Actinidia chinensis HOM05D000089 ORTHO05D053628 3.4e-08 62.8 49 67.3
AUR62014502 Chenopodium quinoa HOM05D000089 ORTHO05D000726 3.4e-08 62.8 76 43.4
AUR62038033 Chenopodium quinoa HOM05D000089 ORTHO05D000726 3.4e-08 62.8 76 43.4
AUR62038036 Chenopodium quinoa HOM05D000089 ORTHO05D000726 3.4e-08 62.8 76 43.4
Gohir.D05G195700 Gossypium hirsutum HOM05D000089 ORTHO05D000726 3.4e-08 62.8 76 42.1
Ca_18050_v3 Cicer arietinum L. HOM05D000089 ORTHO05D000726 4.4e-08 62.4 82 40.2
Sabra02G0027000 Salix brachista HOM05D000089 ORTHO05D000726 5.8e-08 62.0 76 43.4
TWI74G0702 Tripterygium wilfordii HOM05D000089 ORTHO05D000726 7.5e-08 61.6 72 44.4
Atru.chr13.438 Acer truncatum HOM05D000089 ORTHO05D000726 9.8e-08 61.2 76 44.7
Ah.05g177060 Amaranthus hybridus HOM05D000089 ORTHO05D000726 9.8e-08 61.2 76 42.1
EL10Ac1g00649 Beta vulgaris HOM05D000089 ORTHO05D000726 9.8e-08 61.2 76 42.1
Hund26911 Selenicereus undatus HOM05D000089 ORTHO05D000726 9.8e-08 61.2 76 42.1
BcaNung03050 Brassica carinata HOM05D000089 ORTHO05D000726 1.3e-07 60.8 82 37.8
QL02p009158 Quercus lobata HOM05D000089 ORTHO05D000726 1.3e-07 60.8 76 42.1
Lj6g0023947 Lotus japonicus HOM05D000089 ORTHO05D000726 1.7e-07 60.5 82 39.0
TWI53G1865 Tripterygium wilfordii HOM05D000089 ORTHO05D000726 1.7e-07 60.5 72 44.4
ATR1088G035 Amborella trichopoda HOM05D000089 ORTHO05D000104 2.2e-07 60.1 114 34.2
Cfa013855 Carpinus fangiana HOM05D000089 ORTHO05D000726 2.2e-07 60.1 73 42.5
CiPaw.07G159100 Carya illinoinensis HOM05D000089 ORTHO05D000726 2.2e-07 60.1 76 40.8
Eucgr.F01589 Eucalyptus grandis HOM05D000089 ORTHO05D000726 2.2e-07 60.1 76 44.7
Thecc.08G030500 Theobroma cacao HOM05D000089 ORTHO05D000726 2.2e-07 60.1 82 40.2
Phvul.001G012800 Phaseolus vulgaris HOM05D000089 ORTHO05D000726 2.9e-07 59.7 78 42.3
Phvul.007G246200 Phaseolus vulgaris HOM05D000089 ORTHO05D000726 2.9e-07 59.7 76 40.8
Potri.005G229500 Populus trichocarpa HOM05D000089 ORTHO05D000726 2.9e-07 59.7 76 40.8
CiPaw.07G159200 Carya illinoinensis HOM05D000089 ORTHO05D000726 3.7e-07 59.3 76 40.8
Aqoxy6G01153 Aquilegia oxysepala HOM05D000089 ORTHO05D000726 4.9e-07 58.9 76 40.8
PGR083G1459 Punica granatum HOM05D000089 ORTHO05D000726 4.9e-07 58.9 76 42.1
Thhalv10003227m.g Eutrema salsugineum HOM05D000089 ORTHO05D000726 6.4e-07 58.5 76 42.1
MD08G1028600 Malus domestica HOM05D000089 ORTHO05D000726 6.4e-07 58.5 79 40.5
PGR083G2783 Punica granatum HOM05D000089 ORTHO05D000726 6.4e-07 58.5 76 40.8
TWI56G0674 Tripterygium wilfordii HOM05D000089 ORTHO05D000726 6.4e-07 58.5 82 40.2
Duzib093G1615 Durio zibethinus HOM05D000089 ORTHO05D000726 8.3e-07 58.2 76 42.1
GSVIVG01009743001 Vitis vinifera HOM05D000089 ORTHO05D000726 8.3e-07 58.2 75 40.0
Medtr1g022445 Medicago truncatula HOM05D000089 ORTHO05D000726 1.1e-06 57.8 76 39.5
Phvul.011G212800 Phaseolus vulgaris HOM05D000089 ORTHO05D000726 1.1e-06 57.8 112 33.0
VMungo0720G0247 Vigna mungo HOM05D000089 ORTHO05D000726 1.1e-06 57.8 74 39.2
Lj5g0004388 Lotus japonicus HOM05D000089 ORTHO05D000726 1.4e-06 57.4 76 40.8
Lj5g0010967 Lotus japonicus HOM05D000089 ORTHO05D000726 1.4e-06 57.4 76 40.8
Manes.18G022300 Manihot esculenta HOM05D000089 ORTHO05D000726 1.4e-06 57.4 76 42.1
Sabra05G0177300 Salix brachista HOM05D000089 ORTHO05D000726 1.4e-06 57.4 76 40.8
Glyma.12G238200 Glycine max HOM05D000089 ORTHO05D000726 1.9e-06 57.0 78 38.5
BcaB07g31043 Brassica carinata HOM05D000089 ORTHO05D000726 2.4e-06 56.6 76 43.4
Ca_18051_v3 Cicer arietinum L. HOM05D000089 ORTHO05D000726 2.4e-06 56.6 76 40.8
Duzib116G0140 Durio zibethinus HOM05D000089 ORTHO05D000726 2.4e-06 56.6 76 40.8
Lj5g0004163 Lotus japonicus HOM05D000089 ORTHO05D000726 2.4e-06 56.6 76 39.5
Sc26g0003530 Simmondsia chinensis HOM05D000089 ORTHO05D000726 2.4e-06 56.6 72 40.3
Sc26g0003580 Simmondsia chinensis HOM05D000089 ORTHO05D000726 2.4e-06 56.6 72 40.3
Aqoxy4G02139_Aqoxy4G02140 Aquilegia oxysepala HOM05D000089 ORTHO05D000104 3.2e-06 56.2 78 42.3
BraA01t01793Z Brassica rapa HOM05D000089 ORTHO05D000726 3.2e-06 56.2 74 36.5
Glyma.17G252200 Glycine max HOM05D000089 ORTHO05D000726 3.2e-06 56.2 75 38.7
Psat4g191760 Pisum sativum HOM05D000089 ORTHO05D000726 3.2e-06 56.2 76 38.2
Prupe.1G376400 Prunus persica HOM05D000089 ORTHO05D000726 3.2e-06 56.2 76 40.8
TPR.G20181 Trifolium pratense HOM05D000089 ORTHO05D000726 3.2e-06 56.2 76 38.2
arahy.Tifrunner.gnm1.ann1.7JZ58T Arachis hypogaea HOM05D000089 ORTHO05D000726 4.1e-06 55.8 76 38.2
arahy.Tifrunner.gnm1.ann1.X8EVF3 Arachis hypogaea HOM05D000089 ORTHO05D000726 4.1e-06 55.8 76 38.2
COL.COLO4_26276 Corchorus olitorius HOM05D000089 ORTHO05D000726 4.1e-06 55.8 72 43.1
Glyma.14G072700 Glycine max HOM05D000089 ORTHO05D000726 4.1e-06 55.8 76 38.2
Gohir.A06G008700 Gossypium hirsutum HOM05D000089 ORTHO05D000726 4.1e-06 55.8 72 43.1
MD15G1024100 Malus domestica HOM05D000089 ORTHO05D000726 4.1e-06 55.8 74 40.5
Migut.H02531 Erythranthe guttata HOM05D000089 ORTHO05D000726 5.4e-06 55.5 76 39.5
SEGI_22746 Sequoiadendron giganteum HOM05D000089 ORTHO05D000726 5.4e-06 55.5 114 29.8
SGA_v2.0_scaffold12G06298 Striga asiatica HOM05D000089 ORTHO05D000726 5.4e-06 55.5 82 37.8
BcaC04g21969 Brassica carinata HOM05D000089 ORTHO05D000726 7.0e-06 55.1 76 40.8
A09p19990 Brassica napus HOM05D000089 ORTHO05D000726 7.0e-06 55.1 76 40.8
C09p25350 Brassica napus HOM05D000089 ORTHO05D000726 7.0e-06 55.1 76 40.8
BolC9t55434H Brassica oleracea HOM05D000089 ORTHO05D000726 7.0e-06 55.1 76 40.8
BraA09t37608Z Brassica rapa HOM05D000089 ORTHO05D000726 7.0e-06 55.1 76 40.8
Haze_22529 Corylus avellana HOM05D000089 ORTHO05D000726 7.0e-06 55.1 117 32.5
Lj5g0017190 Lotus japonicus HOM05D000089 ORTHO05D000726 7.0e-06 55.1 76 36.8
THA.LOC104801920 Tarenaya hassleriana HOM05D000089 ORTHO05D000726 7.0e-06 55.1 72 40.3
VMungo0647G1542 Vigna mungo HOM05D000089 ORTHO05D000726 7.0e-06 55.1 73 39.7
CARHR181470 Cardamine hirsuta HOM05D000089 ORTHO05D000726 9.2e-06 54.7 62 43.5
FvH4_2g39520 Fragaria vesca HOM05D000089 ORTHO05D000726 9.2e-06 54.7 58 48.3
FAN15G0069 Fragaria x ananassa HOM05D000089 ORTHO05D000726 9.2e-06 54.7 58 48.3
FAN20G2627 Fragaria x ananassa HOM05D000089 ORTHO05D000726 9.2e-06 54.7 58 48.3
FAN27G2720 Fragaria x ananassa HOM05D004347 ORTHO05D005270 9.2e-06 54.7 58 48.3
Glyma.12G238100 Glycine max HOM05D000089 ORTHO05D000726 9.2e-06 54.7 77 37.7
Sp2g07460 Schrenkiella parvula HOM05D000089 ORTHO05D000726 9.2e-06 54.7 64 45.3
SGA_v2.0_scaffold10G05192 Striga asiatica HOM05D000089 ORTHO05D000726 9.2e-06 54.7 102 32.4


User provided reference genes

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