Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 1.3e-309 1065.4 521 100.0
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.0e-280 969.5 520 89.4
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 6.5e-280 966.8 520 89.2
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.1e-279 966.1 521 88.7
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 2.5e-279 964.9 520 89.0
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 2.3e-277 958.4 520 88.5
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 3.9e-277 957.6 520 87.5
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 3.0e-269 931.4 518 86.5
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 3.3e-268 927.9 518 85.3
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 8.5e-264 913.3 516 85.9
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 1.4e-263 912.5 516 84.1
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 7.2e-263 910.2 494 87.4
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 6.7e-261 903.7 516 83.1
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 1.1e-260 902.9 516 84.3
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 1.1e-260 902.9 518 83.2
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 7.4e-260 900.2 516 82.4
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 7.4e-260 900.2 516 83.1
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 1.7e-259 899.0 517 82.0
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 1.7e-259 899.0 517 82.2
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 1.4e-258 896.0 517 82.6
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 1.8e-258 895.6 517 82.6
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 1.8e-258 895.6 516 82.8
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 4.1e-258 894.4 517 82.2
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 7.0e-258 893.6 517 81.0
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 2.0e-257 892.1 517 82.6
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 3.5e-257 891.3 516 82.0
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 7.7e-257 890.2 514 81.9
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 1.7e-256 889.0 516 81.4
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 2.2e-256 888.6 518 81.3
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 3.8e-256 887.9 525 81.7
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 6.5e-256 887.1 543 77.9
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 6.5e-256 887.1 515 82.1
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 8.5e-256 886.7 515 82.1
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 8.5e-256 886.7 515 82.1
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 1.9e-255 885.6 519 80.2
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 1.9e-255 885.6 519 80.2
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 3.2e-255 884.8 525 81.5
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 4.2e-255 884.4 525 81.3
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 7.2e-255 883.6 516 82.6
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 9.4e-255 883.2 525 81.3
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 2.1e-254 882.1 517 79.7
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 2.1e-254 882.1 517 79.9
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 2.1e-254 882.1 517 79.9
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 3.6e-254 881.3 518 80.9
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 3.6e-254 881.3 515 81.2
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 4.7e-254 880.9 520 79.4
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 6.1e-254 880.6 517 79.7
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 6.1e-254 880.6 517 80.1
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 1.0e-253 879.8 517 79.5
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 1.0e-253 879.8 517 79.3
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 1.0e-253 879.8 515 81.7
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 1.4e-253 879.4 517 80.3
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 1.4e-253 879.4 517 79.9
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 1.8e-253 879.0 518 79.3
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 2.3e-253 878.6 520 79.6
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 3.0e-253 878.2 516 81.4
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 3.0e-253 878.2 516 82.0
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 4.0e-253 877.9 517 79.9
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 6.7e-253 877.1 517 80.1
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 6.7e-253 877.1 517 80.1
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 3.3e-252 874.8 514 80.2
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 9.7e-252 873.2 540 78.3
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 2.2e-251 872.1 523 79.2
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 2.2e-251 872.1 519 80.5
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 8.2e-251 870.2 516 80.4
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.1e-250 869.8 516 79.8
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 4.1e-250 867.8 516 80.0
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 1.2e-249 866.3 516 80.2
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 3.5e-249 864.8 490 85.5
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 7.7e-249 863.6 517 79.9
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 7.7e-249 863.6 518 79.2
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.3e-248 862.8 516 79.7
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 1.3e-248 862.8 516 79.7
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 2.2e-248 862.1 519 78.8
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 8.5e-248 860.1 515 79.6
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 1.5e-247 859.4 516 79.5
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 1.9e-247 859.0 521 78.7
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.5e-247 857.4 516 79.3
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 9.4e-247 856.7 514 77.8
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.2e-246 856.3 526 78.1
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 8.0e-246 853.6 550 75.8
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 2.3e-245 852.0 514 77.6
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 5.2e-245 850.9 516 78.7
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 2.0e-244 849.0 514 79.2
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 3.4e-244 848.2 516 76.9
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 5.7e-244 847.4 515 79.4
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 7.5e-244 847.0 515 78.8
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 9.8e-244 846.7 516 79.1
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 9.8e-244 846.7 516 79.7
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 2.8e-243 845.1 516 77.5
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 8.3e-243 843.6 521 77.2
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 1.4e-242 842.8 516 78.7
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 1.4e-242 842.8 518 79.0
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 4.1e-242 841.3 516 78.7
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 4.1e-242 841.3 518 78.8
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 5.4e-242 840.9 516 76.2
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 5.4e-242 840.9 518 78.8
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 9.1e-242 840.1 515 78.6
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 5.9e-241 837.4 522 77.2
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 2.3e-240 835.5 514 76.1
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.5e-239 832.8 517 78.5
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 5.5e-239 830.9 522 76.6
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 4.7e-238 827.8 513 76.4
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 6.1e-238 827.4 467 84.2
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 8.0e-238 827.0 548 74.1
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 2.3e-237 825.5 518 76.4
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 2.3e-237 825.5 526 75.3
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 3.7e-235 818.1 515 76.9
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 2.4e-234 815.5 528 74.6
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 4.1e-234 814.7 518 75.5
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 5.4e-234 814.3 516 76.6
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 1.3e-232 809.7 465 81.9
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 1.7e-232 809.3 467 82.9
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 1.7e-232 809.3 469 81.9
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 1.7e-232 809.3 518 76.4
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 5.0e-232 807.7 516 75.6
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 1.1e-231 806.6 467 80.7
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 9.5e-231 803.5 516 75.6
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 1.8e-229 799.3 519 75.0
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 7.5e-228 793.9 518 72.8
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 1.3e-227 793.1 516 74.8
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 1.1e-226 790.0 513 73.1
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.6e-225 786.2 465 79.6
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 1.6e-225 786.2 518 73.6
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 2.7e-225 785.4 464 81.2
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 6.6e-224 780.8 513 73.1
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 3.3e-223 778.5 521 71.6
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 9.5e-223 776.9 513 72.7
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 3.1e-221 771.9 573 67.9
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 3.4e-220 768.5 557 70.6
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 1.3e-219 766.5 516 71.7
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 1.3e-219 766.5 546 70.1
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 3.7e-219 765.0 516 71.7
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 4.9e-219 764.6 540 68.5
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 3.6e-214 748.4 518 71.6
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 4.7e-214 748.0 515 72.0
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.5e-212 743.0 517 68.9
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 9.9e-212 740.3 515 70.3
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.7e-208 729.6 519 68.8
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 3.4e-204 715.3 384 88.8
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 3.0e-200 702.2 516 67.6
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 1.4e-197 693.3 480 73.5
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 9.9e-196 687.2 501 70.1
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 1.6e-190 669.8 374 84.5
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 2.4e-189 666.0 375 84.8
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 7.9e-185 651.0 479 66.6
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 2.3e-176 622.9 560 58.2
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 3.4e-172 609.0 486 59.9
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 1.0e-171 607.4 446 63.2
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 2.2e-158 563.1 469 57.8
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 1.0e-155 554.3 471 57.5
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 1.8e-149 533.5 352 73.9
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 9.4e-138 494.6 294 78.6
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 5.9e-132 475.3 291 78.0
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 8.5e-131 471.5 289 75.8
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 4.2e-130 469.2 265 80.8
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 2.2e-126 456.8 290 77.2
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 1.2e-121 441.0 289 74.0
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 6.0e-108 395.6 246 76.4
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 8.6e-107 391.7 244 74.6
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.3e-78 298.1 199 71.9
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 1.3e-62 245.0 134 87.3
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 2.0e-55 221.1 395 34.7
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 1.0e-54 218.8 469 32.0
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.0e-38 165.6 206 47.6
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 7.2e-37 159.5 142 52.1
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 4.7e-36 156.8 109 67.0
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 9.4e-29 132.5 87 71.3
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 6.5e-22 109.8 59 79.7
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 2.7e-20 104.4 60 78.3
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 8.0e-20 102.8 142 47.9
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 2.8e-17 94.4 150 38.7
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.2e-14 84.7 160 38.1
TPR.G21382 Trifolium pratense HOM05D003954 ORTHO05D004627 1.6e-07 62.0 50 68.0
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 3.5e-07 60.8 37 73.0
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 5.9e-07 60.1 47 57.4


User provided reference genes

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