Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0018385 Lotus japonicus HOM05D003086 ORTHO05D003347 1.3e-24 115.9 77 100.0
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 5.5e-18 94.0 84 81.0
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 4.6e-17 90.9 87 77.0
Glyma.05G219700 Glycine max HOM05D003086 ORTHO05D003347 2.2e-14 82.0 91 70.3
Glyma.08G026000 Glycine max HOM05D003086 ORTHO05D003347 4.8e-14 80.9 45 88.9
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 1.8e-13 79.0 77 54.5
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 3.1e-13 78.2 42 88.1
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 4.1e-13 77.8 76 56.6
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 2.6e-12 75.1 78 55.1
TPR.G3409 Trifolium pratense HOM05D003086 ORTHO05D003347 2.6e-12 75.1 90 64.4
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 3.4e-12 74.7 80 70.0
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 5.9e-12 73.9 74 54.1
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 1.7e-11 72.4 78 55.1
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 6.5e-11 70.5 77 54.5
Phvul.002G328908 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 8.5e-11 70.1 94 67.0
Lalb_Chr09g0332101 Lupinus albus HOM05D003086 ORTHO05D003347 1.1e-10 69.7 41 78.0
CANSAT21G1677 Cannabis sativa HOM05D003086 ORTHO05D003347 3.2e-10 68.2 39 79.5
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 3.2e-10 68.2 75 49.3
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 4.2e-10 67.8 72 48.6
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 5.5e-10 67.4 75 53.3
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 5.5e-10 67.4 76 52.6
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 9.4e-10 66.6 75 46.7
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 1.2e-09 66.2 42 76.2
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.2e-09 66.2 42 76.2
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 2.1e-09 65.5 74 50.0
MELO3C005750.2 Cucumis melo HOM05D003086 ORTHO05D003347 2.7e-09 65.1 44 70.5
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.7e-09 65.1 43 67.4
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.7e-09 65.1 43 67.4
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.7e-09 65.1 43 67.4
Sed0015662 Sechium edule HOM05D003086 ORTHO05D003347 2.7e-09 65.1 48 66.7
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 3.6e-09 64.7 44 68.2
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 3.6e-09 64.7 41 73.2
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 4.6e-09 64.3 75 52.0
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 7.9e-09 63.5 47 70.2
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 7.9e-09 63.5 74 47.3
CiPaw.11G115700 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.0e-08 63.2 43 65.1
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 1.0e-08 63.2 44 63.6
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 1.0e-08 63.2 41 73.2
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 1.8e-08 62.4 87 41.4
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 2.3e-08 62.0 88 40.9
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 2.3e-08 62.0 88 40.9
CsaV3_5G002030 Cucumis sativus L. HOM05D003086 ORTHO05D003347 3.0e-08 61.6 44 65.9
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 3.9e-08 61.2 44 61.4
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 3.9e-08 61.2 43 62.8
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 5.1e-08 60.8 78 44.9
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 6.7e-08 60.5 43 62.8
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 8.8e-08 60.1 44 68.2
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 8.8e-08 60.1 42 69.0
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 8.8e-08 60.1 42 69.0
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 8.8e-08 60.1 42 69.0
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 8.8e-08 60.1 42 69.0
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 8.8e-08 60.1 42 69.0
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 8.8e-08 60.1 42 64.3
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.1e-07 59.7 44 56.8
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.1e-07 59.7 44 56.8
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.1e-07 59.7 44 56.8
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 1.1e-07 59.7 44 59.1
Sed0027058 Sechium edule HOM05D003086 ORTHO05D003347 1.5e-07 59.3 39 66.7
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 1.5e-07 59.3 42 66.7
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 2.0e-07 58.9 44 63.6
SHI06941 Sapria himalayana HOM05D003472 ORTHO05D004200 2.0e-07 58.9 72 45.8
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 2.6e-07 58.5 45 60.0
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 2.6e-07 58.5 44 63.6
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 2.6e-07 58.5 41 65.9
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 3.3e-07 58.2 44 56.8
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 3.3e-07 58.2 44 59.1
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 4.4e-07 57.8 41 61.0
Potri.003G143800 Populus trichocarpa HOM05D003086 ORTHO05D003347 4.4e-07 57.8 62 58.1
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 5.7e-07 57.4 42 61.9
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 5.7e-07 57.4 44 63.6
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 5.7e-07 57.4 45 60.0
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 7.4e-07 57.0 44 61.4
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 7.4e-07 57.0 44 59.1
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 7.4e-07 57.0 44 61.4
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 7.4e-07 57.0 48 58.3
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 7.4e-07 57.0 44 56.8
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 7.4e-07 57.0 42 59.5
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 9.7e-07 56.6 43 55.8
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 9.7e-07 56.6 43 55.8
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.3e-06 56.2 44 54.5
Lj3g0004362 Lotus japonicus HOM05D003086 ORTHO05D003347 1.3e-06 56.2 40 57.5
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 1.3e-06 56.2 42 64.3
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.7e-06 55.8 43 53.5
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.7e-06 55.8 40 62.5
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 2.2e-06 55.5 41 61.0
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 2.8e-06 55.1 42 64.3
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 2.8e-06 55.1 44 59.1
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 2.8e-06 55.1 45 55.6
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 2.8e-06 55.1 44 54.5
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.8e-06 55.1 41 58.5
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 4.8e-06 54.3 42 61.9
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 4.8e-06 54.3 42 61.9
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 4.8e-06 54.3 42 61.9
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 4.8e-06 54.3 42 61.9
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.8e-06 54.3 37 59.5
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 4.8e-06 54.3 49 51.0
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 4.8e-06 54.3 42 59.5
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 4.8e-06 54.3 44 50.0
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 6.3e-06 53.9 42 61.9
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 6.3e-06 53.9 42 61.9
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 6.3e-06 53.9 42 61.9
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 6.3e-06 53.9 42 61.9
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 6.3e-06 53.9 42 61.9
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 6.3e-06 53.9 42 61.9
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 6.3e-06 53.9 40 52.5
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 6.3e-06 53.9 44 56.8
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 6.3e-06 53.9 40 65.0
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 6.3e-06 53.9 43 55.8
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 6.3e-06 53.9 43 55.8
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 6.3e-06 53.9 42 52.4
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 6.3e-06 53.9 78 37.2
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 8.2e-06 53.5 44 50.0
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 8.2e-06 53.5 42 52.4
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 8.2e-06 53.5 42 50.0
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 8.2e-06 53.5 92 37.0
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 8.2e-06 53.5 41 56.1


User provided reference genes

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