Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0018315 Lotus japonicus HOM05D006645 ORTHO05D008129 4.0e-87 324.7 162 100.0
Phvul.002G280900 Phaseolus vulgaris HOM05D006645 ORTHO05D008129 2.3e-58 229.2 163 75.5
VMungo0251G1538 Vigna mungo HOM05D006645 ORTHO05D008129 6.7e-58 227.6 163 73.0
Glyma.05G199700 Glycine max HOM05D006645 ORTHO05D008129 2.5e-57 225.7 143 79.7
Glyma.08G007200 Glycine max HOM05D006645 ORTHO05D008129 5.7e-57 224.6 163 72.4
Glyma.04G202300 Glycine max HOM05D006645 ORTHO05D008129 9.6e-57 223.8 167 70.1
Psat5g055480 Pisum sativum HOM05D006645 ORTHO05D008129 6.9e-55 217.6 163 69.3
Lalb_Chr08g0237591 Lupinus albus HOM05D006645 ORTHO05D008129 9.0e-55 217.2 162 67.3
Ca_10875_v3 Cicer arietinum L. HOM05D006645 ORTHO05D008129 1.5e-54 216.5 165 69.1
Manes.06G127300 Manihot esculenta HOM05D006645 ORTHO05D008129 5.9e-54 214.5 159 67.9
arahy.Tifrunner.gnm1.ann1.D72E2J Arachis hypogaea HOM05D006645 ORTHO05D008129 7.6e-54 214.2 144 76.4
Phvul.009G160600 Phaseolus vulgaris HOM05D006645 ORTHO05D008129 7.6e-54 214.2 167 65.3
arahy.Tifrunner.gnm1.ann1.1BW3L6 Arachis hypogaea HOM05D006645 ORTHO05D008129 1.0e-53 213.8 144 76.4
Hma1.2p1_0452F.1_g155930 Hydrangea macrophylla HOM05D006645 ORTHO05D008129 2.9e-53 212.2 161 65.2
Lj1g0000604 Lotus japonicus HOM05D006645 ORTHO05D008129 6.5e-53 211.1 165 69.1
TAR622G0574 Trochodendron aralioides HOM05D006645 ORTHO05D008129 1.9e-52 209.5 162 66.7
Nn4g22122 Nelumbo nucifera HOM05D006645 ORTHO05D008129 2.5e-52 209.1 144 70.8
RcHm_v2.0_Chr7g0188541 Rosa chinensis HOM05D006645 ORTHO05D008129 2.5e-52 209.1 163 64.4
FAN13G1824 Fragaria x ananassa HOM05D006645 ORTHO05D008129 5.5e-52 208.0 163 62.6
vmacro19114 Vaccinium macrocarpon HOM05D006645 ORTHO05D008129 7.2e-52 207.6 158 69.0
vmacro19194 Vaccinium macrocarpon HOM05D006645 ORTHO05D008129 7.2e-52 207.6 158 69.0
Medtr3g098520 Medicago truncatula HOM05D006645 ORTHO05D008129 1.2e-51 206.8 162 67.9
Dinv13711 Davidia involucrata HOM05D006645 ORTHO05D008129 1.6e-51 206.5 162 66.0
FvH4_5g09700 Fragaria vesca HOM05D006645 ORTHO05D008129 2.1e-51 206.1 163 62.6
Cc04_g05780 Coffea canephora HOM05D006645 ORTHO05D008129 2.7e-51 205.7 162 64.2
CSS0045487 Camellia sinensis var. sinensis HOM05D006645 ORTHO05D008129 3.5e-51 205.3 163 67.5
CSS0048618 Camellia sinensis var. sinensis HOM05D006645 ORTHO05D008129 3.5e-51 205.3 163 67.5
TWI14G0928 Tripterygium wilfordii HOM05D006645 ORTHO05D008129 3.5e-51 205.3 146 71.2
Thecc.03G141700 Theobroma cacao HOM05D006645 ORTHO05D008129 7.9e-51 204.1 141 70.2
Ciclev10032925m.g Citrus clementina HOM05D006645 ORTHO05D008129 1.8e-50 203.0 161 64.0
Atru.chr6.1936 Acer truncatum HOM05D006645 ORTHO05D008129 3.0e-50 202.2 162 64.2
Duzib084G1311 Durio zibethinus HOM05D006645 ORTHO05D008129 3.9e-50 201.8 160 65.6
Cpa.g.sc2215.2 Carica papaya HOM05D006645 ORTHO05D008129 5.1e-50 201.4 143 68.5
TAR371G0070 Trochodendron aralioides HOM05D006645 ORTHO05D008129 8.7e-50 200.7 163 63.8
Gohir.A12G194100 Gossypium hirsutum HOM05D006645 ORTHO05D008129 1.9e-49 199.5 163 63.8
MD06G1129100 Malus domestica HOM05D006645 ORTHO05D008129 3.3e-49 198.7 164 63.4
Lsat_1_v5_gn_4_84301 Lactuca sativa HOM05D006645 ORTHO05D008129 4.3e-49 198.4 170 65.3
TWI39G0437 Tripterygium wilfordii HOM05D006645 ORTHO05D008129 7.4e-49 197.6 145 70.3
arahy.Tifrunner.gnm1.ann1.Z544U3 Arachis hypogaea HOM05D006645 ORTHO05D008129 9.7e-49 197.2 169 63.3
CiPaw.12G000500 Carya illinoinensis HOM05D006645 ORTHO05D008129 1.3e-48 196.8 155 65.8
Haze_07089 Corylus avellana HOM05D006645 ORTHO05D008129 1.6e-48 196.4 193 57.5
Duzib205G0637 Durio zibethinus HOM05D006645 ORTHO05D008129 1.6e-48 196.4 159 62.3
Migut.I00665 Erythranthe guttata HOM05D006645 ORTHO05D008129 2.2e-48 196.1 138 66.7
Sabra15G0128400 Salix brachista HOM05D006645 ORTHO05D008129 2.2e-48 196.1 170 61.8
Sabra15G0130800 Salix brachista HOM05D006645 ORTHO05D008129 2.2e-48 196.1 168 62.5
PSO017G3202 Papaver somniferum HOM05D006645 ORTHO05D008129 2.8e-48 195.7 160 64.4
DCAR_016335 Daucus carota HOM05D006645 ORTHO05D008129 3.7e-48 195.3 146 65.8
Gohir.D12G196500 Gossypium hirsutum HOM05D006645 ORTHO05D008129 3.7e-48 195.3 163 61.3
PSO478G4148 Papaver somniferum HOM05D006645 ORTHO05D008129 4.8e-48 194.9 173 60.1
Gorai.008G211100 Gossypium raimondii HOM05D006645 ORTHO05D008129 8.2e-48 194.1 163 61.3
Potri.015G108100 Populus trichocarpa HOM05D006645 ORTHO05D008129 1.1e-47 193.7 142 66.9
SalBow7G0306 Salvia bowleyana HOM05D006645 ORTHO05D008129 1.8e-47 193.0 158 60.8
HanXRQChr09g0273781 Helianthus annuus HOM05D006645 ORTHO05D008129 2.4e-47 192.6 163 62.6
MD14G1146000 Malus domestica HOM05D006645 ORTHO05D008129 3.1e-47 192.2 164 61.0
CAN.G1008.52 Capsicum annuum HOM05D006645 ORTHO05D008129 5.3e-47 191.4 157 61.8
Aqoxy3G01868 Aquilegia oxysepala HOM05D006645 ORTHO05D008129 6.9e-47 191.0 136 67.6
arahy.Tifrunner.gnm1.ann1.FT61ID Arachis hypogaea HOM05D006645 ORTHO05D008129 6.9e-47 191.0 169 61.5
MSTRG.22813 Avicennia marina HOM05D006645 ORTHO05D008129 6.9e-47 191.0 139 69.1
Prupe.5G140400 Prunus persica HOM05D006645 ORTHO05D008129 1.2e-46 190.3 166 60.2
COL.COLO4_37268 Corchorus olitorius HOM05D006645 ORTHO05D008129 1.5e-46 189.9 160 62.5
EL10Ac5g11273 Beta vulgaris HOM05D006645 ORTHO05D008129 2.0e-46 189.5 173 58.4
ECA232G4473 Erigeron canadensis HOM05D000001 ORTHO05D001247 2.0e-46 189.5 143 67.1
PGSC0003DMG400014238 Solanum tuberosum HOM05D006645 ORTHO05D008129 2.6e-46 189.1 140 64.3
CDE05G2456 Ceratophyllum demersum HOM05D006645 ORTHO05D008129 3.4e-46 188.7 161 62.7
CDE05G3351 Ceratophyllum demersum HOM05D006645 ORTHO05D008129 5.9e-46 188.0 161 62.7
Solyc03g118130.3 Solanum lycopersicum HOM05D006645 ORTHO05D008129 1.0e-45 187.2 149 61.7
Nitab4.5_0000976g0110 Nicotiana tabacum HOM05D006645 ORTHO05D008129 1.3e-45 186.8 141 66.0
Oeu013667.1 Olea europaea HOM05D006645 ORTHO05D008129 5.0e-45 184.9 154 63.0
Sc22g0003260 Simmondsia chinensis HOM05D006645 ORTHO05D008129 5.0e-45 184.9 143 61.5
Sopen03g037030 Solanum pennellii HOM05D006645 ORTHO05D008129 5.0e-45 184.9 160 59.4
SGA_v2.0_scaffold37G14674 Striga asiatica HOM05D006645 ORTHO05D008129 5.0e-45 184.9 141 61.7
AUR62032209 Chenopodium quinoa HOM05D006645 ORTHO05D008129 6.5e-45 184.5 170 58.8
AUR62043377 Chenopodium quinoa HOM05D006645 ORTHO05D008129 1.4e-44 183.3 170 58.8
PGR142G3652 Punica granatum HOM05D006645 ORTHO05D008129 3.2e-44 182.2 167 58.1
ATR0582G272 Amborella trichopoda HOM05D006645 ORTHO05D008129 4.2e-44 181.8 164 55.5
Rhsim08G0198600 Rhododendron simsii HOM05D006645 ORTHO05D008129 7.2e-44 181.0 153 62.7
CARHR257180 Cardamine hirsuta HOM05D006645 ORTHO05D008129 1.2e-43 180.3 159 58.5
THA.LOC104811555 Tarenaya hassleriana HOM05D006645 ORTHO05D008129 2.1e-43 179.5 136 64.7
Actinidia18289 Actinidia chinensis HOM05D006645 ORTHO05D008129 3.6e-43 178.7 110 73.6
Ah.11g046980 Amaranthus hybridus HOM05D006645 ORTHO05D008129 3.6e-43 178.7 167 58.1
A03p16420 Brassica napus HOM05D006645 ORTHO05D008129 6.1e-43 177.9 104 77.9
BraA03t10932Z Brassica rapa HOM05D006645 ORTHO05D008129 6.1e-43 177.9 104 77.9
Carub.0008s1101 Capsella rubella HOM05D006645 ORTHO05D008129 7.9e-43 177.6 105 76.2
Peaxi162Scf00314g00728 Petunia axillaris HOM05D006645 ORTHO05D008129 7.9e-43 177.6 164 56.7
BcaC01g06063 Brassica carinata HOM05D006645 ORTHO05D008129 1.4e-42 176.8 106 76.4
C03p19310 Brassica napus HOM05D006645 ORTHO05D008129 1.4e-42 176.8 106 76.4
BolC3t14317H Brassica oleracea HOM05D006645 ORTHO05D008129 1.4e-42 176.8 106 76.4
AT5G51010 Arabidopsis thaliana HOM05D006645 ORTHO05D008129 1.8e-42 176.4 124 67.7
BcaC01g06113 Brassica carinata HOM05D006645 ORTHO05D008129 2.3e-42 176.0 102 77.5
Thhalv10014834m.g Eutrema salsugineum HOM05D006645 ORTHO05D008129 3.0e-42 175.6 153 60.1
GSVIVG01008662001 Vitis vinifera HOM05D006645 ORTHO05D008129 3.0e-42 175.6 97 82.5
ClCG06G018300 Citrullus lanatus HOM05D006645 ORTHO05D008129 5.1e-42 174.9 132 62.1
CsaV3_1G000140 Cucumis sativus L. HOM05D006645 ORTHO05D008129 6.7e-42 174.5 134 61.2
Sp6g13160 Schrenkiella parvula HOM05D006645 ORTHO05D008129 6.7e-42 174.5 105 74.3
Dinv23234 Davidia involucrata HOM05D006645 ORTHO05D008129 8.8e-42 174.1 100 80.0
Hund10027 Selenicereus undatus HOM05D006645 ORTHO05D008129 2.0e-41 172.9 140 61.4
AL8G25220 Arabidopsis lyrata HOM05D006645 ORTHO05D008129 3.3e-41 172.2 159 57.2
Zm00001eb113350 Zea mays HOM05D006645 ORTHO05D008129 3.3e-41 172.2 126 65.9
Os11g0528500 Oryza sativa ssp. japonica HOM05D006645 ORTHO05D008129 2.2e-40 169.5 117 69.2
Nitab4.5_0010893g0030 Nicotiana tabacum HOM05D006645 ORTHO05D008129 4.8e-40 168.3 140 61.4
Aa31LG3G7470 Aethionema arabicum HOM05D006645 ORTHO05D008129 1.1e-39 167.2 105 71.4
Eucgr.K02190 Eucalyptus grandis HOM05D006645 ORTHO05D008129 1.1e-39 167.2 104 74.0
unitig_52.g17484 Utricularia gibba HOM05D006645 ORTHO05D008129 5.3e-39 164.9 129 59.7
Sed0010334 Sechium edule HOM05D006645 ORTHO05D008129 1.7e-37 159.8 110 70.0
Lj5C86G18 Lonicera japonica HOM05D006645 ORTHO05D008129 2.9e-37 159.1 145 58.6
SMO116G0387 Selaginella moellendorffii HOM05D006645 ORTHO05D008129 2.3e-34 149.4 132 58.3
QL10p000304 Quercus lobata HOM05D006645 ORTHO05D008129 2.8e-32 142.5 288 35.8
MELO3C026168.2 Cucumis melo HOM05D006645 ORTHO05D008129 6.3e-32 141.4 108 59.3
Mapoly0188s0012 Marchantia polymorpha HOM05D006645 ORTHO05D008129 8.2e-32 141.0 138 51.4
Lj9A488T61 Lonicera japonica HOM05D006645 ORTHO05D008129 1.4e-31 140.2 172 48.8
Actinidia25512 Actinidia chinensis HOM05D006645 ORTHO05D008129 2.4e-31 139.4 138 53.6
Pp3c20_8260 Physcomitrium patens HOM05D006645 ORTHO05D008129 7.0e-31 137.9 138 52.2
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 2.0e-30 136.3 136 51.5
SEGI_04043 Sequoiadendron giganteum HOM05D006645 ORTHO05D008129 7.2e-28 127.9 145 46.9
Glyma.17G183301 Glycine max HOM05D006645 ORTHO05D008129 1.3e-21 107.1 65 80.0
Glyma.06G163200 Glycine max HOM05D006645 ORTHO05D008129 4.8e-16 88.6 57 80.7
Potri.012G109700 Populus trichocarpa HOM05D006645 ORTHO05D008129 2.5e-12 76.3 69 56.5
Duzib177G0391 Durio zibethinus HOM05D006062 ORTHO05D007613 6.3e-08 61.6 99 35.4
Gohir.A02G139100 Gossypium hirsutum HOM05D006062 ORTHO05D007613 1.1e-07 60.8 99 35.4
Gohir.D03G049700 Gossypium hirsutum HOM05D006062 ORTHO05D007613 1.4e-07 60.5 99 35.4
Gorai.003G051200 Gossypium raimondii HOM05D006062 ORTHO05D007613 1.4e-07 60.5 99 35.4
Pp3c2_6110 Physcomitrium patens HOM05D006645 ORTHO05D008129 1.4e-07 60.5 41 51.2
MSTRG.26938 Avicennia marina HOM05D006062 ORTHO05D007613 1.8e-07 60.1 86 38.4
Pp3c14_10490 Physcomitrium patens HOM05D006645 ORTHO05D008129 1.8e-07 60.1 41 51.2
LjContig00222g0021869 Lotus japonicus HOM05D006062 ORTHO05D007613 2.4e-07 59.7 99 37.4
Os08g0162600 Oryza sativa ssp. japonica HOM05D006062 ORTHO05D007613 3.1e-07 59.3 107 33.6
SMO140G0084 Selaginella moellendorffii HOM05D006062 ORTHO05D007613 3.1e-07 59.3 106 33.0
Thecc.05G207500 Theobroma cacao HOM05D006062 ORTHO05D007613 4.1e-07 58.9 99 35.4
ATR0829G005 Amborella trichopoda HOM05D006062 ORTHO05D007613 7.0e-07 58.2 89 38.2
arahy.Tifrunner.gnm1.ann1.GUDI7G Arachis hypogaea HOM05D006062 ORTHO05D007613 7.0e-07 58.2 88 37.5
arahy.Tifrunner.gnm1.ann1.GZNV26 Arachis hypogaea HOM05D006062 ORTHO05D007613 7.0e-07 58.2 88 37.5
CBR_g41690 Chara braunii HOM05D006062 ORTHO05D008129 7.0e-07 58.2 106 33.0
Cre12.g510400 Chlamydomonas reinhardtii HOM05D006062 ORTHO05D007613 7.0e-07 58.2 39 61.5
Cpa.g.sc39.53 Carica papaya HOM05D006062 ORTHO05D007613 9.2e-07 57.8 107 30.8
DCAR_014570 Daucus carota HOM05D006062 ORTHO05D007613 9.2e-07 57.8 106 33.0
SMO165G0067 Selaginella moellendorffii HOM05D006645 ORTHO05D008129 9.2e-07 57.8 42 52.4
AagrBONN_evm.TU.Sc2ySwM_362.1750 Anthoceros agrestis HOM05D006645 ORTHO05D008129 1.2e-06 57.4 57 45.6
Duzib106G1742 Durio zibethinus HOM05D006062 ORTHO05D007613 1.2e-06 57.4 99 33.3
ECA233G2527 Erigeron canadensis HOM05D006062 ORTHO05D007613 1.2e-06 57.4 102 34.3
PGR142G0857 Punica granatum HOM05D006062 ORTHO05D007613 1.2e-06 57.4 107 32.7
Hund02967 Selenicereus undatus HOM05D006062 ORTHO05D007613 1.2e-06 57.4 89 34.8
HPP92_025509 Vanilla planifolia HOM05D006062 ORTHO05D007613 1.2e-06 57.4 57 45.6
HPP92_025526 Vanilla planifolia HOM05D006062 ORTHO05D007613 1.2e-06 57.4 57 45.6
CDE02G0767 Ceratophyllum demersum HOM05D006062 ORTHO05D007613 1.6e-06 57.0 106 31.1
MD07G1305400 Malus domestica HOM05D006062 ORTHO05D007613 1.6e-06 57.0 101 35.6
Zm00001eb415470 Zea mays HOM05D006062 ORTHO05D007613 1.6e-06 57.0 107 31.8
Eucgr.K00099 Eucalyptus grandis HOM05D006062 ORTHO05D007613 2.0e-06 56.6 99 33.3
HanXRQChr04g0105241 Helianthus annuus HOM05D006062 ORTHO05D007613 2.0e-06 56.6 100 35.0
Manes.08G164800 Manihot esculenta HOM05D006062 ORTHO05D007613 2.0e-06 56.6 99 37.4
unitig_52.g17696 Utricularia gibba HOM05D006062 ORTHO05D007613 2.0e-06 56.6 85 37.6
VMungo0720G1055 Vigna mungo HOM05D006062 ORTHO05D007613 2.0e-06 56.6 99 38.4
Glyma.01G229800 Glycine max HOM05D006062 ORTHO05D007613 2.7e-06 56.2 99 34.3
PSO063G5144 Papaver somniferum HOM05D006062 ORTHO05D007613 2.7e-06 56.2 101 35.6
PSO782G5695 Papaver somniferum HOM05D006062 ORTHO05D007613 2.7e-06 56.2 101 35.6
Sed0000932 Sechium edule HOM05D006062 ORTHO05D007613 2.7e-06 56.2 95 34.7
Prupe.2G323500 Prunus persica HOM05D006062 ORTHO05D007613 3.5e-06 55.8 101 35.6
THA.LOC104820874 Tarenaya hassleriana HOM05D006062 ORTHO05D007613 3.5e-06 55.8 107 30.8
Atru.chr12.2018 Acer truncatum HOM05D006062 ORTHO05D007613 4.5e-06 55.5 107 31.8
Actinidia28267 Actinidia chinensis HOM05D006062 ORTHO05D007613 4.5e-06 55.5 96 34.4
MELO3C005432.2 Cucumis melo HOM05D006062 ORTHO05D007613 4.5e-06 55.5 87 36.8
Aqoxy3G02060 Aquilegia oxysepala HOM05D006062 ORTHO05D007613 5.9e-06 55.1 107 31.8
CANSAT21G2164 Cannabis sativa HOM05D006062 ORTHO05D007613 5.9e-06 55.1 107 31.8
Cre24.g755197 Chlamydomonas reinhardtii HOM05D006645 ORTHO05D008129 5.9e-06 55.1 103 35.0
Thhalv10014045m.g Eutrema salsugineum HOM05D006062 ORTHO05D007613 5.9e-06 55.1 100 37.0
Lalb_Chr05g0211331 Lupinus albus HOM05D006062 ORTHO05D007613 5.9e-06 55.1 99 33.3
QL09p026245 Quercus lobata HOM05D006062 ORTHO05D007613 5.9e-06 55.1 99 32.3
TWI60G0061 Tripterygium wilfordii HOM05D006062 ORTHO05D007613 5.9e-06 55.1 107 32.7


User provided reference genes

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