Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 7.9e-98 360.5 195 100.0
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 2.7e-77 292.4 195 80.0
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.7e-76 289.7 195 80.0
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 8.6e-76 287.3 195 79.0
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 2.5e-75 285.8 195 79.0
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 9.5e-75 283.9 195 81.0
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 4.7e-74 281.6 195 77.9
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 1.0e-73 280.4 193 78.8
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 1.5e-72 276.6 195 75.9
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.7e-71 273.1 195 75.9
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 2.4e-70 269.2 195 74.4
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 3.8e-68 261.9 195 73.8
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 1.3e-63 246.9 195 70.8
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 2.4e-62 242.7 171 76.0
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 5.4e-62 241.5 193 67.4
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 5.4e-62 241.5 195 67.7
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 7.0e-62 241.1 195 66.7
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 7.0e-62 241.1 193 66.8
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 9.2e-62 240.7 193 66.8
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 9.2e-62 240.7 193 66.8
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 2.7e-61 239.2 193 66.8
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 3.5e-61 238.8 196 67.3
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 3.5e-61 238.8 185 67.0
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 3.5e-61 238.8 195 65.6
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 3.5e-61 238.8 193 67.4
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 5.9e-61 238.0 193 65.3
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 7.8e-61 237.7 195 69.7
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 7.8e-61 237.7 189 67.7
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.7e-60 236.5 195 66.2
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 2.3e-60 236.1 195 69.2
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 2.3e-60 236.1 190 67.4
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.3e-60 236.1 195 64.6
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 3.0e-60 235.7 193 64.2
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 3.0e-60 235.7 193 65.8
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 3.0e-60 235.7 194 64.9
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 3.9e-60 235.3 189 67.2
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 3.9e-60 235.3 195 64.6
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 3.9e-60 235.3 171 73.7
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 5.0e-60 235.0 194 63.4
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 6.6e-60 234.6 193 64.8
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 6.6e-60 234.6 180 68.3
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 6.6e-60 234.6 195 65.1
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 8.6e-60 234.2 195 64.1
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 1.5e-59 233.4 195 64.6
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 1.9e-59 233.0 193 66.8
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 2.5e-59 232.6 193 64.2
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 3.3e-59 232.3 195 65.6
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 4.3e-59 231.9 173 68.2
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 4.3e-59 231.9 187 65.8
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 7.3e-59 231.1 193 63.7
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 1.2e-58 230.3 200 63.5
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 1.2e-58 230.3 200 63.5
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 2.1e-58 229.6 198 63.1
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 2.1e-58 229.6 193 63.7
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 2.1e-58 229.6 193 63.7
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 3.6e-58 228.8 155 74.2
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 3.6e-58 228.8 195 63.1
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 3.6e-58 228.8 193 64.8
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 4.7e-58 228.4 193 67.4
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.7e-58 228.4 200 63.0
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 6.2e-58 228.0 182 65.4
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 8.0e-58 227.6 150 76.7
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 8.0e-58 227.6 168 70.2
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 1.1e-57 227.3 193 62.2
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.4e-57 226.9 190 64.2
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 1.4e-57 226.9 196 62.8
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 1.8e-57 226.5 193 67.4
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 3.1e-57 225.7 183 65.6
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 4.0e-57 225.3 193 59.1
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 4.0e-57 225.3 152 74.3
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 4.0e-57 225.3 197 62.4
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 6.8e-57 224.6 194 63.4
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 6.8e-57 224.6 193 58.5
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 8.9e-57 224.2 193 62.2
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.2e-56 223.8 179 65.9
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 1.2e-56 223.8 193 58.5
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 2.6e-56 222.6 152 71.7
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.6e-56 222.6 193 61.7
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 2.6e-56 222.6 195 62.6
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 2.6e-56 222.6 191 61.8
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 3.4e-56 222.2 174 66.7
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 3.4e-56 222.2 170 63.5
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 3.4e-56 222.2 186 64.0
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 4.4e-56 221.9 150 74.0
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 7.5e-56 221.1 167 67.1
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 7.5e-56 221.1 199 62.8
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 9.8e-56 220.7 193 59.6
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 9.8e-56 220.7 195 59.5
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 9.8e-56 220.7 193 63.2
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.3e-55 220.3 193 61.1
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.3e-55 220.3 171 67.3
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.7e-55 219.9 193 59.6
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 1.7e-55 219.9 152 71.7
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 1.7e-55 219.9 156 71.8
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 2.9e-55 219.2 193 59.6
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 3.7e-55 218.8 166 67.5
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 8.3e-55 217.6 193 58.0
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 8.3e-55 217.6 171 69.6
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 1.4e-54 216.9 168 63.7
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 2.4e-54 216.1 165 66.7
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 9.2e-54 214.2 157 66.2
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 9.2e-54 214.2 165 68.5
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.2e-53 213.8 175 61.7
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 1.6e-53 213.4 195 56.4
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 2.0e-53 213.0 208 56.2
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 2.0e-53 213.0 177 65.0
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 3.5e-53 212.2 209 57.4
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 3.5e-53 212.2 199 56.8
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 3.5e-53 212.2 193 59.1
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 4.6e-53 211.8 152 68.4
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 7.8e-53 211.1 197 60.4
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 7.8e-53 211.1 157 65.6
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 1.0e-52 210.7 200 60.0
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.0e-52 210.7 152 68.4
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 3.9e-52 208.8 156 70.5
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 1.5e-51 206.8 152 68.4
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 4.3e-51 205.3 192 55.7
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.1e-50 203.0 176 62.5
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 2.1e-50 203.0 173 60.1
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 4.7e-50 201.8 169 62.1
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 2.3e-49 199.5 156 65.4
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 3.1e-49 199.1 191 58.1
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 2.6e-48 196.1 171 57.9
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 2.9e-47 192.6 196 54.6
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 6.4e-47 191.4 130 70.8
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.7e-44 183.3 201 55.2
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 1.7e-44 183.3 186 56.5
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 4.3e-43 178.7 173 54.3
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 7.3e-43 177.9 250 45.2
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 2.2e-39 166.4 125 64.0
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 2.9e-39 166.0 145 58.6
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 3.8e-39 165.6 108 72.2
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 6.0e-37 158.3 139 63.3
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 2.3e-36 156.4 131 62.6
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 3.0e-36 156.0 106 72.6
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 8.6e-36 154.5 236 46.6
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 3.3e-35 152.5 157 47.1
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.2e-34 150.6 193 49.7
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 6.2e-34 148.3 111 64.9
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 3.8e-31 139.0 145 44.8
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 1.9e-30 136.7 149 46.3
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 2.4e-30 136.3 146 43.2
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.4e-30 136.3 128 55.5
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 5.4e-30 135.2 128 55.5
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.2e-29 134.0 140 44.3
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.7e-29 132.9 128 56.2
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 3.5e-29 132.5 91 65.9
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.5e-29 132.5 124 56.5
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.3e-28 130.6 128 54.7
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 2.3e-28 129.8 82 74.4
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 5.1e-28 128.6 111 59.5
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 6.6e-28 128.3 193 42.5
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 3.3e-27 125.9 115 53.0
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 5.1e-20 102.1 121 50.4
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 1.4e-14 84.0 169 34.9
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 3.5e-13 79.3 84 56.0
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 6.0e-13 78.6 57 64.9
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.9e-06 57.0 103 43.7


User provided reference genes

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