Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0017928 Lotus japonicus HOM05D015243 ORTHO05D000203 1.9e-26 123.2 65 100.0
Phvul.002G329300 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 1.3e-16 90.5 67 70.1
Glyma.05G245600 Glycine max HOM05D000135 ORTHO05D000203 8.7e-16 87.8 69 71.0
Ca_17196_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 1.1e-15 87.4 63 69.8
Glyma.08G053500 Glycine max HOM05D000135 ORTHO05D000203 1.9e-15 86.7 68 70.6
VMungo0251G3734 Vigna mungo HOM05D000135 ORTHO05D000203 5.6e-15 85.1 52 78.8
Medtr8g107110 Medicago truncatula HOM05D015243 ORTHO05D000203 1.1e-13 80.9 63 68.3
Psat7g002360 Pisum sativum HOM05D015243 ORTHO05D000203 2.2e-11 73.2 45 75.6
TPR.G1416 Trifolium pratense HOM05D002159 ORTHO05D007297 2.2e-11 73.2 44 72.7
ClCG06G014370 Citrullus lanatus HOM05D000135 ORTHO05D000203 4.9e-11 72.0 46 71.7
Glyma.07G101100 Glycine max HOM05D000135 ORTHO05D000203 2.4e-10 69.7 65 53.8
VMungo0464G2017 Vigna mungo HOM05D000135 ORTHO05D000203 2.4e-10 69.7 67 56.7
Lj2g0002413 Lotus japonicus HOM05D000135 ORTHO05D000203 9.3e-10 67.8 44 72.7
Phvul.004G151525 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 9.3e-10 67.8 67 55.2
Sed0000275 Sechium edule HOM05D000135 ORTHO05D000203 1.6e-09 67.0 46 65.2
Sed0026410 Sechium edule HOM05D000135 ORTHO05D000203 1.6e-09 67.0 58 62.1
Peaxi162Scf00683g00043 Petunia axillaris HOM05D000135 ORTHO05D000203 2.1e-09 66.6 51 58.8
EL10Ac1g00489 Beta vulgaris HOM05D000135 ORTHO05D000203 2.7e-09 66.2 57 59.6
Nitab4.5_0009467g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000203 4.6e-09 65.5 46 65.2
Nitab4.5_0011970g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000203 4.6e-09 65.5 46 65.2
CAN.G1129.52 Capsicum annuum HOM05D000135 ORTHO05D000203 6.0e-09 65.1 46 60.9
Ca_25313_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 6.0e-09 65.1 65 52.3
Migut.I00446 Erythranthe guttata HOM05D000135 ORTHO05D000203 6.0e-09 65.1 49 61.2
Lalb_Chr09g0330421 Lupinus albus HOM05D000135 ORTHO05D000203 6.0e-09 65.1 43 79.1
Solyc06g068960.1 Solanum lycopersicum HOM05D000135 ORTHO05D000203 7.9e-09 64.7 46 65.2
Sopen03g037760 Solanum pennellii HOM05D000135 ORTHO05D000203 7.9e-09 64.7 54 57.4
Sopen06g026250 Solanum pennellii HOM05D000135 ORTHO05D000203 7.9e-09 64.7 46 65.2
PGSC0003DMG400028797 Solanum tuberosum HOM05D000135 ORTHO05D000203 7.9e-09 64.7 46 65.2
Nitab4.5_0003968g0020 Nicotiana tabacum HOM05D000135 ORTHO05D000203 1.0e-08 64.3 52 53.8
Solyc03g118810.1 Solanum lycopersicum HOM05D000135 ORTHO05D000203 1.0e-08 64.3 52 55.8
GSVIVG01008421001 Vitis vinifera HOM05D000135 ORTHO05D000203 1.0e-08 64.3 48 62.5
CAN.G423.28 Capsicum annuum HOM05D000135 ORTHO05D000203 1.8e-08 63.5 46 63.0
Dinv07296 Davidia involucrata HOM05D000145 ORTHO05D000203 1.8e-08 63.5 43 67.4
Dinv26572 Davidia involucrata HOM05D000135 ORTHO05D000203 1.8e-08 63.5 45 64.4
Dinv27613 Davidia involucrata HOM05D000145 ORTHO05D000203 1.8e-08 63.5 43 67.4
Nitab4.5_0001456g0110 Nicotiana tabacum HOM05D000135 ORTHO05D000203 1.8e-08 63.5 65 55.4
PGSC0003DMG400005745 Solanum tuberosum HOM05D000135 ORTHO05D000203 1.8e-08 63.5 52 53.8
Medtr6g079570 Medicago truncatula HOM05D000135 ORTHO05D000203 2.3e-08 63.2 65 53.8
Sc12g0007170 Simmondsia chinensis HOM05D000135 ORTHO05D000203 2.3e-08 63.2 52 55.8
CSS0002278 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 6.7e-08 61.6 49 57.1
CSS0033163 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 6.7e-08 61.6 49 57.1
Hma1.2p1_0669F.1_g200160 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 6.7e-08 61.6 52 55.8
CiPaw.15G142300 Carya illinoinensis HOM05D000135 ORTHO05D000203 8.7e-08 61.2 46 63.0
SGA_v2.0_scaffold5G02968 Striga asiatica HOM05D000135 ORTHO05D000203 1.9e-07 60.1 53 52.8
MELO3C017353.2 Cucumis melo HOM05D000135 ORTHO05D000203 2.5e-07 59.7 69 50.7
Manes.14G170600 Manihot esculenta HOM05D000135 ORTHO05D000203 2.5e-07 59.7 46 58.7
Actinidia35125 Actinidia chinensis HOM05D000135 ORTHO05D000203 4.3e-07 58.9 47 57.4
Peaxi162Scf00207g00006 Petunia axillaris HOM05D000135 ORTHO05D000203 4.3e-07 58.9 44 63.6
CsaV3_1G004290 Cucumis sativus L. HOM05D000135 ORTHO05D000203 5.6e-07 58.5 56 57.1
Cc04_g06360 Coffea canephora HOM05D000135 ORTHO05D000203 7.4e-07 58.2 48 54.2
Haze_18836 Corylus avellana HOM05D000135 ORTHO05D000203 7.4e-07 58.2 41 65.9
HanXRQChr01g0013261 Helianthus annuus HOM05D000135 ORTHO05D000203 7.4e-07 58.2 51 52.9
HanXRQChr15g0477721 Helianthus annuus HOM05D000135 ORTHO05D000203 7.4e-07 58.2 46 54.3
PSO017G3116 Papaver somniferum HOM05D000135 ORTHO05D000203 7.4e-07 58.2 51 56.9
PSO478G4477 Papaver somniferum HOM05D000135 ORTHO05D000203 7.4e-07 58.2 51 56.9
Psat1g033200 Pisum sativum HOM05D000135 ORTHO05D000203 7.4e-07 58.2 44 63.6
Cfa019671 Carpinus fangiana HOM05D000135 ORTHO05D000203 9.6e-07 57.8 60 56.7
Ciclev10013012m.g Citrus clementina HOM05D000135 ORTHO05D000203 9.6e-07 57.8 42 61.9
Ah.05g171470 Amaranthus hybridus HOM05D000135 ORTHO05D000203 1.3e-06 57.4 39 66.7
AUR62019110 Chenopodium quinoa HOM05D000135 ORTHO05D000203 1.3e-06 57.4 55 52.7
Potri.015G039500 Populus trichocarpa HOM05D015243 ORTHO05D023094 2.1e-06 56.6 49 57.1
MSTRG.4573 Avicennia marina HOM05D000135 ORTHO05D000203 2.8e-06 56.2 51 52.9
DCAR_010743 Daucus carota HOM05D000135 ORTHO05D000203 2.8e-06 56.2 41 58.5
HanXRQChr16g0529521 Helianthus annuus HOM05D000135 ORTHO05D000203 2.8e-06 56.2 43 58.1
Manes.06G007600 Manihot esculenta HOM05D000135 ORTHO05D000203 2.8e-06 56.2 39 61.5
Nn3g18256 Nelumbo nucifera HOM05D000135 ORTHO05D000203 3.7e-06 55.8 50 54.0
Sabra15G0038600 Salix brachista HOM05D015243 ORTHO05D023094 3.7e-06 55.8 39 64.1
Thecc.03G053900 Theobroma cacao HOM05D000135 ORTHO05D000203 3.7e-06 55.8 44 56.8
TWI15G1116 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 3.7e-06 55.8 41 58.5
Aqoxy3G04020 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 4.8e-06 55.5 43 60.5
Nitab4.5_0000036g0500 Nicotiana tabacum HOM05D000135 ORTHO05D000203 4.8e-06 55.5 52 46.2
CSS0023028 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 6.2e-06 55.1 36 66.7
COL.COLO4_30130 Corchorus olitorius HOM05D000135 ORTHO05D000203 6.2e-06 55.1 49 55.1
Oeu046172.1 Olea europaea HOM05D000135 ORTHO05D000203 6.2e-06 55.1 52 51.9
TAR374G0850 Trochodendron aralioides HOM05D000135 ORTHO05D000203 6.2e-06 55.1 53 49.1
COL.COLO4_35380 Corchorus olitorius HOM05D000135 ORTHO05D000203 8.1e-06 54.7 49 55.1
Eucgr.B00943 Eucalyptus grandis HOM05D000135 ORTHO05D000203 8.1e-06 54.7 37 64.9
Sabra15G0057500 Salix brachista HOM05D015243 ORTHO05D023094 8.1e-06 54.7 39 61.5
Sabra15G0070600 Salix brachista HOM05D015243 ORTHO05D023094 8.1e-06 54.7 39 61.5
TAR622G0250 Trochodendron aralioides HOM05D000135 ORTHO05D000203 8.1e-06 54.7 45 60.0
vmacro22374 Vaccinium macrocarpon HOM05D000135 ORTHO05D000203 8.1e-06 54.7 45 53.3
vmacro22896 Vaccinium macrocarpon HOM05D000135 ORTHO05D000203 8.1e-06 54.7 45 53.3


User provided reference genes

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