Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0017898 Lotus japonicus HOM05D001218 ORTHO05D004088 3.1e-34 147.9 74 100.0
Psat6g131840 Pisum sativum HOM05D001218 ORTHO05D004088 4.0e-26 120.9 65 92.3
Glyma.20G007400 Glycine max HOM05D001218 ORTHO05D004088 6.9e-26 120.2 65 90.8
Lj2g0017094 Lotus japonicus HOM05D001218 ORTHO05D004088 6.9e-26 120.2 65 92.3
Phvul.003G009600 Phaseolus vulgaris HOM05D001218 ORTHO05D004088 1.5e-25 119.0 65 90.8
Glyma.07G160500 Glycine max HOM05D001218 ORTHO05D004088 2.0e-25 118.6 65 89.2
Medtr1g035230 Medicago truncatula HOM05D001218 ORTHO05D004088 4.4e-25 117.5 65 87.7
Psat0s5519g0040 Pisum sativum HOM05D001218 ORTHO05D004088 4.4e-25 117.5 65 89.2
Psat1g072640 Pisum sativum HOM05D001218 ORTHO05D004088 4.4e-25 117.5 65 89.2
VMungo1215G2664 Vigna mungo HOM05D001218 ORTHO05D004088 5.8e-25 117.1 65 89.2
GSVIVG01013442001 Vitis vinifera HOM05D001218 ORTHO05D004088 5.8e-25 117.1 66 84.8
Lalb_Chr17g0338171 Lupinus albus HOM05D001218 ORTHO05D004088 7.6e-25 116.7 65 87.7
TWI12G0956 Tripterygium wilfordii HOM05D001218 ORTHO05D004088 9.9e-25 116.3 65 87.7
TWI36G0968 Tripterygium wilfordii HOM05D001218 ORTHO05D004088 9.9e-25 116.3 65 87.7
Ca_12496_v3 Cicer arietinum L. HOM05D001218 ORTHO05D004088 1.7e-24 115.5 65 86.2
Eucgr.F03611 Eucalyptus grandis HOM05D001218 ORTHO05D004088 2.2e-24 115.2 65 86.2
Eucgr.F01823 Eucalyptus grandis HOM05D001218 ORTHO05D004088 2.9e-24 114.8 65 86.2
PGR031G3703 Punica granatum HOM05D001218 ORTHO05D004088 2.9e-24 114.8 65 86.2
BcaB03g12841 Brassica carinata HOM05D001218 ORTHO05D004088 3.8e-24 114.4 65 86.2
Hma1.2p1_0810F.1_g221990 Hydrangea macrophylla HOM05D001218 ORTHO05D004088 3.8e-24 114.4 65 84.6
Potri.005G257800 Populus trichocarpa HOM05D001218 ORTHO05D004088 3.8e-24 114.4 65 86.2
Sabra05G0199700 Salix brachista HOM05D001218 ORTHO05D004088 3.8e-24 114.4 65 86.2
Cpa.g.c24967.5 Carica papaya HOM05D001218 ORTHO05D004088 4.9e-24 114.0 65 84.6
Lalb_Chr10g0095321 Lupinus albus HOM05D001218 ORTHO05D004088 4.9e-24 114.0 65 84.6
TPR.G18596 Trifolium pratense HOM05D001218 ORTHO05D004088 4.9e-24 114.0 65 86.2
Lsat_1_v5_gn_2_3161 Lactuca sativa HOM05D001218 ORTHO05D004088 6.4e-24 113.6 65 83.1
Manes.05G129500 Manihot esculenta HOM05D001218 ORTHO05D004088 6.4e-24 113.6 65 86.2
CANSAT25G3586 Cannabis sativa HOM05D001218 ORTHO05D004088 8.4e-24 113.2 65 84.6
Duzib093G2014 Durio zibethinus HOM05D001218 ORTHO05D004088 8.4e-24 113.2 65 84.6
HanXRQChr14g0427931 Helianthus annuus HOM05D001218 ORTHO05D004088 8.4e-24 113.2 65 84.6
TAR376G0228 Trochodendron aralioides HOM05D001218 ORTHO05D004088 8.4e-24 113.2 65 83.1
BolC6t40103H Brassica oleracea HOM05D001218 ORTHO05D004088 1.1e-23 112.8 65 86.2
Carub.0002s2346 Capsella rubella HOM05D001218 ORTHO05D004088 1.1e-23 112.8 65 86.2
CARHR070100 Cardamine hirsuta HOM05D001218 ORTHO05D004088 1.1e-23 112.8 65 86.2
Duzib116G0454 Durio zibethinus HOM05D001218 ORTHO05D004088 1.1e-23 112.8 65 83.1
Hma1.2p1_0489F.1_g164180 Hydrangea macrophylla HOM05D001218 ORTHO05D004088 1.1e-23 112.8 65 86.2
Hund01814 Selenicereus undatus HOM05D001218 ORTHO05D004088 1.1e-23 112.8 65 86.2
Thecc.08G098300 Theobroma cacao HOM05D001218 ORTHO05D004088 1.1e-23 112.8 65 83.1
BcaB07g32089 Brassica carinata HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
BcaC05g26002 Brassica carinata HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
BcaC07g39066 Brassica carinata HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
A06p16940 Brassica napus HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
A08p29140 Brassica napus HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
C05p19600 Brassica napus HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
C08p20520 Brassica napus HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
BolC5t30663H Brassica oleracea HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
BolC8t49679H Brassica oleracea HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
BraA06t24804Z Brassica rapa HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
BraA08t34850Z Brassica rapa HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
CARHR021410 Cardamine hirsuta HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
AUR62035185 Chenopodium quinoa HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
AUR62043319 Chenopodium quinoa HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
Thhalv10007087m.g Eutrema salsugineum HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
PSO017G6550 Papaver somniferum HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
PSO170G0003 Papaver somniferum HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
Solyc04g082880.4 Solanum lycopersicum HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
Sopen04g036520 Solanum pennellii HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
PGSC0003DMG400010007 Solanum tuberosum HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
THA.LOC104812017 Tarenaya hassleriana HOM05D001218 ORTHO05D004088 1.4e-23 112.5 65 84.6
Gohir.A02G087100 Gossypium hirsutum HOM05D001218 ORTHO05D004088 1.9e-23 112.1 65 83.1
Gohir.D02G101900 Gossypium hirsutum HOM05D001218 ORTHO05D004088 1.9e-23 112.1 65 83.1
Manes.18G001100 Manihot esculenta HOM05D001218 ORTHO05D004088 1.9e-23 112.1 65 83.1
Oeu035767.1 Olea europaea HOM05D001218 ORTHO05D004088 1.9e-23 112.1 65 84.6
Hund01816 Selenicereus undatus HOM05D001218 ORTHO05D004088 1.9e-23 112.1 65 83.1
BcaC08g47163 Brassica carinata HOM05D001218 ORTHO05D004088 3.2e-23 111.3 65 84.6
BraA07t31750Z Brassica rapa HOM05D001218 ORTHO05D004088 3.2e-23 111.3 65 83.1
Carub.0001s2042 Capsella rubella HOM05D001218 ORTHO05D004088 3.2e-23 111.3 65 83.1
CiPaw.07G131800 Carya illinoinensis HOM05D001218 ORTHO05D004088 3.2e-23 111.3 65 83.1
Dinv23340 Davidia involucrata HOM05D001218 ORTHO05D004088 3.2e-23 111.3 65 83.1
ECA232G2106 Erigeron canadensis HOM05D001218 ORTHO05D004088 3.2e-23 111.3 65 81.5
Thhalv10018291m.g Eutrema salsugineum HOM05D001218 ORTHO05D004088 3.2e-23 111.3 65 84.6
vmacro21744 Vaccinium macrocarpon HOM05D001218 ORTHO05D004088 3.2e-23 111.3 65 83.1
Atru.chr13.35 Acer truncatum HOM05D001218 ORTHO05D004088 4.2e-23 110.9 65 84.6
Actinidia15552 Actinidia chinensis HOM05D001218 ORTHO05D004088 4.2e-23 110.9 65 83.1
BcaC08g47232 Brassica carinata HOM05D001218 ORTHO05D004088 4.2e-23 110.9 65 84.6
CAN.G1330.23 Capsicum annuum HOM05D001218 ORTHO05D004088 4.2e-23 110.9 65 83.1
AL2G36690 Arabidopsis lyrata HOM05D001218 ORTHO05D004088 5.4e-23 110.5 65 83.1
A07p42210 Brassica napus HOM05D001218 ORTHO05D004088 5.4e-23 110.5 65 84.6
Ciclev10000595m.g Citrus clementina HOM05D001218 ORTHO05D004088 5.4e-23 110.5 65 81.5
Lsat_1_v5_gn_8_26721 Lactuca sativa HOM05D001218 ORTHO05D004088 5.4e-23 110.5 65 80.0
QL02p016004 Quercus lobata HOM05D001218 ORTHO05D004088 5.4e-23 110.5 65 83.1
EL10Ac1g01822 Beta vulgaris HOM05D001218 ORTHO05D004088 7.1e-23 110.2 65 83.1
Peaxi162Scf00064g01432 Petunia axillaris HOM05D001218 ORTHO05D004088 7.1e-23 110.2 65 81.5
Sp1g18650 Schrenkiella parvula HOM05D001218 ORTHO05D004088 7.1e-23 110.2 65 83.1
Aa31LG7G5130 Aethionema arabicum HOM05D001218 ORTHO05D004088 9.3e-23 109.8 65 81.5
Aqoxy5G00952 Aquilegia oxysepala HOM05D001218 ORTHO05D004088 9.3e-23 109.8 65 83.1
AT1G76550 Arabidopsis thaliana HOM05D001218 ORTHO05D004088 9.3e-23 109.8 65 83.1
arahy.Tifrunner.gnm1.ann1.H559FZ Arachis hypogaea HOM05D001218 ORTHO05D004088 9.3e-23 109.8 65 83.1
DCAR_017621 Daucus carota HOM05D001218 ORTHO05D004088 9.3e-23 109.8 65 83.1
MD06G1002300 Malus domestica HOM05D001218 ORTHO05D004088 9.3e-23 109.8 65 81.5
Nn5g31069 Nelumbo nucifera HOM05D001218 ORTHO05D004088 9.3e-23 109.8 67 80.6
Nn6g31597 Nelumbo nucifera HOM05D001218 ORTHO05D004088 9.3e-23 109.8 65 83.1
Prupe.5G003400 Prunus persica HOM05D001218 ORTHO05D004088 9.3e-23 109.8 65 81.5
AL1G33980 Arabidopsis lyrata HOM05D001218 ORTHO05D004088 1.2e-22 109.4 64 82.8
AT1G20950 Arabidopsis thaliana HOM05D001218 ORTHO05D004088 1.2e-22 109.4 64 82.8
CSS0003035 Camellia sinensis var. sinensis HOM05D001218 ORTHO05D004088 1.2e-22 109.4 65 81.5
CSS0013185 Camellia sinensis var. sinensis HOM05D001218 ORTHO05D004088 1.2e-22 109.4 65 81.5
Lsat_1_v5_gn_9_48180 Lactuca sativa HOM05D001218 ORTHO05D004088 1.2e-22 109.4 65 80.0
Nitab4.5_0000464g0120 Nicotiana tabacum HOM05D001218 ORTHO05D004088 1.2e-22 109.4 65 81.5
Peaxi162Scf00385g00622 Petunia axillaris HOM05D001218 ORTHO05D004088 1.2e-22 109.4 65 81.5
Rhsim06G0002000 Rhododendron simsii HOM05D001218 ORTHO05D004088 1.2e-22 109.4 65 81.5
THA.LOC104804960 Tarenaya hassleriana HOM05D001218 ORTHO05D004088 1.2e-22 109.4 65 81.5
THA.LOC104813730 Tarenaya hassleriana HOM05D001218 ORTHO05D004088 1.2e-22 109.4 65 81.5
CAN.G208.42 Capsicum annuum HOM05D001218 ORTHO05D004088 1.6e-22 109.0 65 80.0
Cfa014150 Carpinus fangiana HOM05D001218 ORTHO05D004088 1.6e-22 109.0 65 81.5
CiPaw.08G078100 Carya illinoinensis HOM05D001218 ORTHO05D004088 1.6e-22 109.0 65 81.5
Haze_22874 Corylus avellana HOM05D001218 ORTHO05D004088 1.6e-22 109.0 65 81.5
MELO3C017063.2 Cucumis melo HOM05D001218 ORTHO05D004088 1.6e-22 109.0 65 83.1
Migut.C00344 Erythranthe guttata HOM05D001218 ORTHO05D004088 1.6e-22 109.0 65 81.5
FAN13G0530 Fragaria x ananassa HOM05D001218 ORTHO05D004088 1.6e-22 109.0 65 84.6
Nitab4.5_0001309g0150 Nicotiana tabacum HOM05D001218 ORTHO05D004088 1.6e-22 109.0 65 81.5
RcHm_v2.0_Chr7g0217221 Rosa chinensis HOM05D001218 ORTHO05D004088 1.6e-22 109.0 65 81.5
arahy.Tifrunner.gnm1.ann1.BFE9YH Arachis hypogaea HOM05D001218 ORTHO05D004088 2.1e-22 108.6 65 83.1
Oeu042498.1 Olea europaea HOM05D001218 ORTHO05D004088 2.1e-22 108.6 65 83.1
Sc02g0009320 Simmondsia chinensis HOM05D001218 ORTHO05D004088 2.1e-22 108.6 65 81.5
SGA_v2.0_scaffold227G43178 Striga asiatica HOM05D001218 ORTHO05D004088 2.7e-22 108.2 65 81.5
FvH4_5g26380 Fragaria vesca HOM05D001218 ORTHO05D004088 3.5e-22 107.8 65 83.1
FAN18G2420 Fragaria x ananassa HOM05D001218 ORTHO05D004088 3.5e-22 107.8 65 83.1
TAR628G0316 Trochodendron aralioides HOM05D001218 ORTHO05D004088 3.5e-22 107.8 65 80.0
MSTRG.1008 Avicennia marina HOM05D001218 ORTHO05D004088 4.6e-22 107.5 65 83.1
ClCG11G019100 Citrullus lanatus HOM05D001218 ORTHO05D004088 4.6e-22 107.5 65 80.0
Gorai.005G115600 Gossypium raimondii HOM05D001218 ORTHO05D004088 4.6e-22 107.5 66 81.8
MBI01_g22962_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D004088 4.6e-22 107.5 65 78.5
Sabra02G0002000 Salix brachista HOM05D001218 ORTHO05D004088 4.6e-22 107.5 65 81.5
Solyc12g095760.2 Solanum lycopersicum HOM05D001218 ORTHO05D004088 4.6e-22 107.5 65 78.5
Sopen12g031660 Solanum pennellii HOM05D001218 ORTHO05D004088 4.6e-22 107.5 65 78.5
PGSC0003DMG400029309 Solanum tuberosum HOM05D001218 ORTHO05D004088 4.6e-22 107.5 65 78.5
Lalb_Chr04g0258861 Lupinus albus HOM05D001218 ORTHO05D004088 6.0e-22 107.1 65 83.1
MSTRG.24899 Avicennia marina HOM05D001218 ORTHO05D004088 7.8e-22 106.7 65 80.0
CsaV3_4G037690 Cucumis sativus L. HOM05D001218 ORTHO05D004088 7.8e-22 106.7 65 80.0
Potri.002G003100 Populus trichocarpa HOM05D001218 ORTHO05D004088 7.8e-22 106.7 65 80.0
C06p50810 Brassica napus HOM05D001218 ORTHO05D004088 1.0e-21 106.3 66 83.3
DCAR_013949 Daucus carota HOM05D001218 ORTHO05D004088 1.0e-21 106.3 65 80.0
HanXRQChr08g0216771 Helianthus annuus HOM05D001218 ORTHO05D004088 1.0e-21 106.3 65 78.5
MBI01_g45278_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D004088 1.3e-21 105.9 65 76.9
Sed0013544 Sechium edule HOM05D001218 ORTHO05D004088 1.3e-21 105.9 65 80.0
Sed0027532 Sechium edule HOM05D001218 ORTHO05D004088 1.3e-21 105.9 65 80.0
Actinidia37903 Actinidia chinensis HOM05D001218 ORTHO05D004088 1.7e-21 105.5 66 81.8
Migut.N02993 Erythranthe guttata HOM05D001218 ORTHO05D004088 1.7e-21 105.5 65 80.0
FAN04G0409 Fragaria x ananassa HOM05D001218 ORTHO05D004088 1.7e-21 105.5 65 81.5
FAN08G1986 Fragaria x ananassa HOM05D001218 ORTHO05D004088 1.7e-21 105.5 65 81.5
Nitab4.5_0003423g0060 Nicotiana tabacum HOM05D001218 ORTHO05D004088 1.7e-21 105.5 64 76.6
ECA233G0383 Erigeron canadensis HOM05D001218 ORTHO05D004088 2.3e-21 105.1 64 79.7
Lj4C3G12 Lonicera japonica HOM05D001218 ORTHO05D004088 3.0e-21 104.8 65 78.5
SGA_v2.0_scaffold161G37861 Striga asiatica HOM05D001218 ORTHO05D004088 3.0e-21 104.8 65 78.5
TAR625G0052 Trochodendron aralioides HOM05D001218 ORTHO05D004088 3.0e-21 104.8 65 75.4
MSTRG.24523 Avicennia marina HOM05D001218 ORTHO05D004088 3.9e-21 104.4 65 76.9
HPP92_007461 Vanilla planifolia HOM05D001218 ORTHO05D004088 3.9e-21 104.4 65 78.5
HanXRQChr16g0512491 Helianthus annuus HOM05D001218 ORTHO05D004088 5.1e-21 104.0 65 76.9
Os06g0326400 Oryza sativa ssp. japonica HOM05D001218 ORTHO05D004088 5.1e-21 104.0 65 76.9
Actinidia17088 Actinidia chinensis HOM05D001218 ORTHO05D004088 6.6e-21 103.6 66 80.3
Os02g0714200 Oryza sativa ssp. japonica HOM05D001218 ORTHO05D004088 6.6e-21 103.6 65 76.9
CDE05G0435 Ceratophyllum demersum HOM05D001218 ORTHO05D004088 1.1e-20 102.8 65 73.8
ATR0057G131 Amborella trichopoda HOM05D001218 ORTHO05D004088 1.5e-20 102.4 65 76.9
ATR0605G031 Amborella trichopoda HOM05D001218 ORTHO05D004088 1.9e-20 102.1 65 75.4
Os08g0345700 Oryza sativa ssp. japonica HOM05D001218 ORTHO05D004088 5.6e-20 100.5 65 72.3
Zm00001eb252630 Zea mays HOM05D001218 ORTHO05D004088 5.6e-20 100.5 65 72.3
CDE10G0658 Ceratophyllum demersum HOM05D001218 ORTHO05D004088 1.3e-19 99.4 64 71.9
Zm00001eb043000 Zea mays HOM05D001218 ORTHO05D004088 1.6e-19 99.0 65 72.3
TAR375G0723 Trochodendron aralioides HOM05D001218 ORTHO05D004088 6.2e-19 97.1 63 69.8
Os09g0298100 Oryza sativa ssp. japonica HOM05D001218 ORTHO05D004088 1.4e-18 95.9 67 70.1
PSO210G1993 Papaver somniferum HOM05D001218 ORTHO05D004088 1.4e-18 95.9 64 68.8
PSO210G6488 Papaver somniferum HOM05D001218 ORTHO05D004088 1.8e-18 95.5 64 68.8
HPP92_003843 Vanilla planifolia HOM05D001218 ORTHO05D004088 2.4e-18 95.1 65 70.8
Nn1g08050 Nelumbo nucifera HOM05D001218 ORTHO05D004088 2.6e-17 91.7 64 64.1
Mapoly0105s0043 Marchantia polymorpha HOM05D001218 ORTHO05D004088 1.7e-16 89.0 63 63.5
HPP92_002587 Vanilla planifolia HOM05D001218 ORTHO05D004088 1.9e-15 85.5 65 60.0
SMO115G0046 Selaginella moellendorffii HOM05D001218 ORTHO05D004088 3.2e-15 84.7 63 60.3
AagrBONN_evm.TU.Sc2ySwM_228.4948 Anthoceros agrestis HOM05D001218 ORTHO05D004088 4.2e-15 84.3 63 61.9
Pp3c21_16140 Physcomitrium patens HOM05D001218 ORTHO05D004088 7.1e-15 83.6 63 60.3
Pp3c18_9850 Physcomitrium patens HOM05D001218 ORTHO05D003142 3.0e-13 78.2 65 53.8
SEGI_06789 Sequoiadendron giganteum HOM05D001218 ORTHO05D004088 9.6e-12 73.2 64 57.8
MBI04_g22928_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D004088 2.1e-11 72.0 41 85.4
CDE05G0891 Ceratophyllum demersum HOM05D001218 ORTHO05D004088 2.4e-10 68.6 48 68.8
Zm00001eb188910 Zea mays HOM05D001218 ORTHO05D004088 3.8e-08 61.2 37 78.4
DCAR_012926 Daucus carota HOM05D001218 ORTHO05D003142 2.1e-06 55.5 63 39.7


User provided reference genes

Program Settings