Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 1.8e-190 669.1 334 100.0
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 4.4e-165 584.7 337 85.8
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 1.7e-164 582.8 334 84.7
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 7.1e-163 577.4 334 83.8
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 1.2e-162 576.6 323 87.0
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.6e-162 576.2 337 85.2
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 2.1e-162 575.9 321 87.2
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 6.0e-162 574.3 337 84.3
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.3e-159 566.6 334 83.8
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.6e-159 566.2 334 83.8
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 3.6e-159 565.1 322 85.7
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 3.1e-158 562.0 323 84.8
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 1.6e-154 549.7 331 80.1
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 2.7e-154 548.9 330 80.6
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 7.9e-154 547.4 320 81.9
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 7.9e-154 547.4 332 79.5
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.0e-153 547.0 330 80.6
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 1.1e-152 543.5 331 78.5
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 1.9e-152 542.7 335 79.1
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 3.3e-152 542.0 333 79.6
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 3.3e-152 542.0 332 79.5
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 7.3e-152 540.8 331 77.9
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 1.3e-151 540.0 331 78.2
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 2.8e-151 538.9 333 79.0
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 4.8e-151 538.1 333 77.2
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 2.4e-150 535.8 330 78.2
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 4.0e-150 535.0 333 79.3
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.2e-149 533.5 330 77.9
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 1.5e-149 533.1 338 76.6
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 3.4e-149 531.9 322 78.0
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 2.2e-148 529.3 332 78.0
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 2.9e-148 528.9 332 77.4
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 3.8e-148 528.5 332 77.7
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 6.4e-148 527.7 321 77.9
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 6.4e-148 527.7 316 80.1
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 2.4e-147 525.8 331 77.0
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 3.2e-147 525.4 330 77.0
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 5.5e-147 524.6 333 74.8
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 1.2e-146 523.5 335 74.9
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 1.6e-146 523.1 331 75.8
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 2.1e-146 522.7 319 77.1
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 2.7e-146 522.3 341 74.5
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 3.5e-146 521.9 332 77.4
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 4.6e-146 521.5 341 75.1
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 4.6e-146 521.5 317 77.6
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 6.0e-146 521.2 334 75.7
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.0e-146 521.2 334 75.1
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 7.9e-146 520.8 322 77.6
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 1.0e-145 520.4 324 77.8
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.0e-145 520.4 335 75.2
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 1.3e-145 520.0 334 74.9
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 1.3e-145 520.0 322 77.3
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 3.9e-145 518.5 334 74.3
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 3.9e-145 518.5 326 76.4
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 5.1e-145 518.1 334 74.0
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 5.1e-145 518.1 317 77.3
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 6.7e-145 517.7 369 69.9
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 8.7e-145 517.3 335 74.6
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 1.1e-144 516.9 335 76.7
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 1.5e-144 516.5 321 76.9
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 3.3e-144 515.4 337 75.1
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.4e-144 514.2 335 74.3
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.3e-143 513.5 334 73.4
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.3e-143 513.5 334 73.4
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.1e-143 512.7 368 69.3
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.8e-143 512.3 347 72.0
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 4.8e-143 511.5 332 74.4
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 6.2e-143 511.1 337 73.3
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.4e-142 510.0 332 74.1
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 1.4e-142 510.0 335 73.1
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 1.4e-142 510.0 329 74.8
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 1.8e-142 509.6 319 77.4
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 1.8e-142 509.6 332 74.1
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 1.5e-141 506.5 331 73.1
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 3.4e-141 505.4 314 77.1
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 3.4e-141 505.4 319 77.7
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 4.5e-141 505.0 371 67.9
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 4.5e-141 505.0 326 75.2
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 5.8e-141 504.6 331 74.3
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.0e-140 503.8 347 71.5
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 1.4e-139 500.0 318 74.8
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 7.1e-139 497.7 331 73.7
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 1.3e-137 493.4 325 74.2
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 1.3e-137 493.4 325 74.2
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 2.3e-137 492.7 374 64.7
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 3.9e-137 491.9 319 75.9
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 1.5e-136 490.0 330 72.1
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.9e-136 489.6 401 64.6
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 9.6e-136 487.3 320 74.7
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 3.7e-135 485.3 304 75.7
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 7.6e-133 477.6 333 69.7
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 6.5e-132 474.6 332 70.5
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.1e-130 469.5 331 70.4
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 4.3e-128 461.8 334 68.6
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 8.2e-127 457.6 350 66.0
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 2.9e-124 449.1 327 66.7
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 1.6e-122 443.4 330 64.5
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 7.9e-122 441.0 333 64.6
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 9.1e-118 427.6 247 82.6
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 3.4e-117 425.6 247 81.0
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 9.4e-115 417.5 243 80.7
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.1e-112 410.6 307 68.1
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 1.7e-111 406.8 247 78.5
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 3.7e-111 405.6 247 76.5
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 4.2e-107 392.1 333 63.4
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 3.6e-106 389.0 320 61.6
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 1.1e-104 384.0 328 59.8
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 2.0e-104 383.3 371 57.1
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 4.1e-102 375.6 242 72.7
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 1.4e-94 350.5 320 58.1
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 8.8e-89 331.3 196 80.1
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 3.7e-79 299.3 233 62.2
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 9.2e-70 268.1 342 43.3
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 6.6e-68 261.9 200 64.5
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 1.6e-66 257.3 346 44.5
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 6.2e-66 255.4 223 60.5
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 6.4e-63 245.4 263 49.0
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 1.6e-61 240.7 138 81.9
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 1.0e-60 238.0 134 82.8
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 5.6e-59 232.3 245 48.6
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 1.5e-56 224.2 127 81.1
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.9e-37 158.7 132 62.9
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 2.3e-36 157.1 132 62.1
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-35 154.8 162 48.8
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 4.3e-35 152.9 120 63.3
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.3e-35 152.9 134 59.7
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 6.2e-34 149.1 104 70.2
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.1e-33 148.3 125 62.4
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.1e-33 148.3 125 62.4
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 5.3e-33 146.0 125 61.6
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 2.0e-32 144.1 109 66.1
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 3.1e-25 120.2 199 39.2
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 1.9e-22 110.9 99 60.6
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 1.9e-22 110.9 78 69.2
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 1.8e-20 104.4 72 63.9
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 3.3e-19 100.1 77 62.3
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 8.2e-18 95.5 77 61.0
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 4.1e-17 93.2 67 70.1
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 2.0e-16 90.9 91 53.8
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 4.5e-16 89.7 53 90.6
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 2.9e-15 87.0 66 65.2
PRCOL_00002191 Prasinoderma coloniale HOM05D005162 ORTHO05D333607 1.9e-14 84.3 184 31.5
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 9.3e-14 82.0 65 61.5
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 1.2e-13 81.6 202 32.7
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 4.3e-11 73.2 55 67.3
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 2.9e-07 60.5 164 28.0
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 3.8e-07 60.1 50 56.0
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 6.5e-07 59.3 51 51.0
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 8.5e-07 58.9 58 56.9
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 1.1e-06 58.5 164 29.9


User provided reference genes

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