Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 9.0e-210 733.4 391 100.0
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 3.5e-185 651.7 376 92.8
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 8.5e-184 647.1 376 92.3
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 1.8e-181 639.4 376 91.0
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 6.8e-181 637.5 377 91.0
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 8.8e-181 637.1 376 90.4
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 1.2e-180 636.7 377 91.0
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 7.5e-180 634.0 370 90.5
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 5.4e-178 627.9 367 91.8
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 2.1e-174 615.9 366 90.4
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 7.5e-172 607.4 365 90.1
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 9.8e-172 607.1 379 86.8
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 2.2e-171 605.9 375 88.5
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 3.7e-171 605.1 373 87.1
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 6.3e-171 604.4 371 86.0
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 3.1e-170 602.1 373 86.1
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 4.1e-170 601.7 374 86.4
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 7.0e-170 600.9 383 84.9
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 9.1e-170 600.5 382 84.3
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 2.7e-169 599.0 378 85.7
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.0e-168 597.0 374 85.8
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 3.8e-168 595.1 366 86.9
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 6.6e-168 594.3 373 86.3
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 1.9e-167 592.8 373 86.1
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 2.5e-167 592.4 381 84.3
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 4.2e-167 591.7 349 90.8
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 7.2e-167 590.9 381 85.0
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 9.5e-167 590.5 376 85.6
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 9.5e-167 590.5 361 85.9
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 6.1e-166 587.8 385 83.4
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 8.0e-166 587.4 364 87.1
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 1.8e-165 586.3 371 84.9
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 4.0e-165 585.1 373 84.5
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 5.2e-165 584.7 364 84.9
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 5.2e-165 584.7 364 86.0
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 8.9e-165 583.9 373 85.5
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 1.5e-164 583.2 374 83.7
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 3.4e-164 582.0 373 84.5
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 3.4e-164 582.0 358 87.7
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 7.0e-162 574.3 375 83.7
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 5.0e-160 568.2 351 86.0
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 9.5e-159 563.9 363 83.2
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 4.0e-157 558.5 367 82.8
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 7.5e-156 554.3 382 79.1
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 4.9e-155 551.6 365 81.1
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 6.4e-155 551.2 373 79.9
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 8.3e-155 550.8 363 82.1
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.9e-154 549.7 384 78.4
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 2.4e-154 549.3 346 84.7
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 3.2e-154 548.9 362 81.5
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 1.2e-153 547.0 384 78.1
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 1.6e-153 546.6 368 81.5
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.7e-152 543.1 373 78.8
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 3.9e-152 542.0 377 80.6
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 8.6e-152 540.8 373 79.6
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 8.6e-152 540.8 373 78.3
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 8.6e-152 540.8 363 82.1
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 9.5e-151 537.3 365 79.2
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 1.6e-150 536.6 373 78.8
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.8e-150 535.8 381 78.0
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 3.6e-150 535.4 378 79.4
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 5.2e-149 531.6 366 79.2
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 8.9e-149 530.8 366 79.0
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.2e-148 530.4 378 77.5
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 3.4e-148 528.9 346 82.7
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 3.4e-148 528.9 357 82.1
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 9.8e-148 527.3 362 79.3
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 9.8e-148 527.3 365 78.1
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 9.8e-148 527.3 366 78.7
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 9.8e-148 527.3 366 78.7
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 4.9e-147 525.0 359 78.6
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 6.4e-147 524.6 362 79.0
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 3.2e-146 522.3 369 77.5
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 4.1e-146 521.9 353 79.9
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 7.1e-146 521.2 407 73.7
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 1.2e-145 520.4 343 81.9
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 2.7e-145 519.2 369 77.8
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 3.5e-145 518.8 413 71.4
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 1.3e-144 516.9 342 81.6
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 2.3e-144 516.2 342 81.6
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 1.1e-143 513.8 357 77.6
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 3.3e-143 512.3 364 75.3
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 1.2e-142 510.4 368 76.4
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 2.1e-142 509.6 340 81.5
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 3.6e-142 508.8 385 75.6
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 6.2e-142 508.1 350 79.4
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 6.8e-141 504.6 382 72.5
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 6.8e-141 504.6 366 77.3
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 8.9e-141 504.2 309 85.8
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 2.2e-139 499.6 368 76.6
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 8.4e-139 497.7 355 75.5
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 1.1e-138 497.3 366 74.6
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 1.9e-138 496.5 339 82.0
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 2.4e-138 496.1 368 75.5
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 4.1e-138 495.4 373 73.7
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 1.2e-137 493.8 368 73.1
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 2.1e-137 493.0 347 76.9
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.0e-136 490.7 360 76.4
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 3.9e-136 488.8 317 87.1
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 8.6e-136 487.6 368 72.0
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 8.6e-136 487.6 363 74.9
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 1.5e-135 486.9 349 77.4
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 1.5e-135 486.9 362 75.1
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 2.5e-135 486.1 350 76.9
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 7.3e-135 484.6 343 77.0
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 2.1e-134 483.0 352 76.1
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 4.7e-134 481.9 365 73.4
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 4.7e-134 481.9 355 75.8
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 8.1e-134 481.1 350 76.3
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 8.1e-134 481.1 350 76.3
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.8e-133 479.9 349 73.9
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 1.3e-131 473.8 358 73.5
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 5.4e-130 468.4 366 72.1
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 3.3e-127 459.1 366 67.8
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 2.9e-123 446.0 274 89.1
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 4.2e-122 442.2 353 68.8
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.4e-122 441.8 351 67.2
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 2.1e-121 439.9 349 71.6
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.3e-118 430.6 317 73.5
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 6.2e-118 428.3 378 66.4
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.8e-117 426.8 349 65.0
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 2.6e-116 422.9 268 85.1
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 4.6e-113 412.1 292 80.1
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 2.3e-112 409.8 364 64.6
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 8.7e-112 407.9 355 63.1
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 3.7e-110 402.5 286 76.6
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.8e-109 400.2 307 68.1
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 4.5e-108 395.6 325 66.8
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 5.8e-108 395.2 275 80.0
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 2.5e-106 389.8 263 80.6
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 6.0e-105 385.2 339 62.2
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 1.3e-104 384.0 346 61.0
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.1e-101 372.5 369 57.5
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 5.3e-101 372.1 308 70.8
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 2.9e-99 366.3 218 91.3
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 1.6e-94 350.5 284 68.3
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 4.5e-92 342.4 346 56.1
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 3.3e-87 326.2 224 82.6
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 3.5e-68 263.1 172 82.6
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.6e-49 201.1 125 88.8
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 6.8e-48 195.7 145 76.6
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 1.4e-45 188.0 141 70.2
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.3e-43 181.4 137 75.2
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 2.3e-43 180.6 119 82.4
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 7.3e-34 149.1 97 81.4
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 2.6e-31 140.6 105 72.4
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 2.3e-27 127.5 79 75.9
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 3.0e-27 127.1 70 82.9
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 7.3e-26 122.5 117 52.1
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 1.6e-25 121.3 113 59.3
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 2.8e-25 120.6 81 81.5
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 1.5e-18 98.2 81 67.9
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 1.9e-18 97.8 76 76.3
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.1e-16 92.0 129 48.1
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 5.2e-16 89.7 93 55.9
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 8.9e-16 89.0 53 92.5
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 7.6e-15 85.9 72 56.9
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 4.9e-14 83.2 63 74.6
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.2e-13 80.5 96 53.1
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 5.4e-13 79.7 128 46.9
PRCOL_00002192 Prasinoderma coloniale HOM05D004327 ORTHO05D005032 2.5e-10 70.9 250 27.6
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 4.3e-10 70.1 42 85.7
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 2.8e-09 67.4 75 52.0
MCO09G810 Micromonas commoda HOM05D004327 ORTHO05D005032 2.8e-09 67.4 163 30.1
CiPaw.16G058000 Carya illinoinensis HOM05D002292 ORTHO05D003256 4.0e-08 63.5 56 69.6


User provided reference genes

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