Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0016926 Lotus japonicus HOM05D007686 ORTHO05D009709 5.9e-79 299.3 144 100.0
Medtr8g089700 Medicago truncatula HOM05D007686 ORTHO05D009709 4.2e-53 213.4 137 75.2
arahy.Tifrunner.gnm1.ann1.BXJH78 Arachis hypogaea HOM05D007686 ORTHO05D009709 2.3e-51 207.6 146 71.2
TPR.G6255 Trifolium pratense HOM05D007686 ORTHO05D009709 4.4e-50 203.4 126 78.6
Psat7g058760 Pisum sativum HOM05D007686 ORTHO05D009709 1.2e-47 195.3 124 77.4
Glyma.08G131100 Glycine max HOM05D007686 ORTHO05D009709 1.6e-47 194.9 140 71.4
Glyma.05G173932 Glycine max HOM05D007686 ORTHO05D009709 4.5e-47 193.4 140 70.7
Phvul.002G258900 Phaseolus vulgaris HOM05D007686 ORTHO05D009709 5.9e-47 193.0 147 69.4
Ca_17785_v3 Cicer arietinum L. HOM05D007686 ORTHO05D009709 2.9e-46 190.7 125 76.8
Lalb_Chr07g0185471 Lupinus albus HOM05D007686 ORTHO05D009709 4.3e-45 186.8 126 73.0
Potri.008G185000 Populus trichocarpa HOM05D007686 ORTHO05D009709 3.7e-41 173.7 137 66.4
Manes.13G021400 Manihot esculenta HOM05D007686 ORTHO05D009709 3.2e-40 170.6 137 64.2
Sabra08G0140000 Salix brachista HOM05D007686 ORTHO05D009709 4.1e-40 170.2 137 65.7
Gohir.D04G180200 Gossypium hirsutum HOM05D007686 ORTHO05D009709 4.6e-39 166.8 137 61.3
Manes.13G022000 Manihot esculenta HOM05D007686 ORTHO05D009709 1.5e-37 161.8 131 63.4
Gohir.A04G137000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 2.5e-29 134.4 137 51.8
Gohir.A03G132900 Gossypium hirsutum HOM05D007686 ORTHO05D009709 8.9e-27 125.9 100 61.0
Dinv14741 Davidia involucrata HOM05D007686 ORTHO05D009709 7.5e-26 122.9 112 58.9
TWI36G0128 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 9.8e-26 122.5 98 62.2
CiPaw.05G168000 Carya illinoinensis HOM05D007686 ORTHO05D009709 5.1e-22 110.2 86 65.1
Os07g0688100 Oryza sativa ssp. japonica HOM05D007686 ORTHO05D009709 9.5e-21 105.9 111 47.7
CANSAT01G2773 Cannabis sativa HOM05D007686 ORTHO05D009709 1.6e-20 105.1 71 73.2
FAN12G1967 Fragaria x ananassa HOM05D007686 ORTHO05D009709 2.8e-20 104.4 85 61.2
RcHm_v2.0_Chr4g0432731 Rosa chinensis HOM05D007686 ORTHO05D009709 1.4e-19 102.1 84 60.7
Prupe.1G242700 Prunus persica HOM05D007686 ORTHO05D009709 3.1e-19 100.9 81 63.0
Cpa.g.sc33.48 Carica papaya HOM05D007686 ORTHO05D009709 6.8e-19 99.8 87 60.9
Ciclev10031251m.g Citrus clementina HOM05D007686 ORTHO05D009709 1.5e-18 98.6 84 64.3
TWI18G1075 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 2.6e-18 97.8 81 64.2
PGR119G1810 Punica granatum HOM05D007686 ORTHO05D009709 1.7e-17 95.1 74 62.2
MD13G1103100 Malus domestica HOM05D007686 ORTHO05D009709 3.7e-17 94.0 71 63.4
Gorai.005G176400 Gossypium raimondii HOM05D007686 ORTHO05D009709 4.9e-17 93.6 107 49.5
SGA_v2.0_scaffold100G29576 Striga asiatica HOM05D007686 ORTHO05D009709 9.2e-16 89.4 85 52.9
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 1.2e-15 89.0 71 64.8
HanXRQChr08g0208401 Helianthus annuus HOM05D007686 ORTHO05D009709 1.2e-15 89.0 81 58.0
Migut.K00622 Erythranthe guttata HOM05D007686 ORTHO05D009709 2.1e-15 88.2 84 54.8
Thecc.02G263700 Theobroma cacao HOM05D007686 ORTHO05D009709 2.1e-15 88.2 86 55.8
MD16G1103300 Malus domestica HOM05D007686 ORTHO05D009709 4.6e-15 87.0 61 65.6
GSVIVG01000559001 Vitis vinifera HOM05D007686 ORTHO05D009709 4.6e-15 87.0 61 73.8
CSS0050065 Camellia sinensis var. sinensis HOM05D007686 ORTHO05D009709 1.3e-14 85.5 65 64.6
Solyc06g008190.1 Solanum lycopersicum HOM05D007686 ORTHO05D009709 1.3e-14 85.5 71 60.6
Sopen06g003050 Solanum pennellii HOM05D007686 ORTHO05D009709 1.3e-14 85.5 71 60.6
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 2.3e-14 84.7 71 54.9
Lj3P1060G37 Lonicera japonica HOM05D007686 ORTHO05D009709 3.9e-14 84.0 69 60.9
Lsat_1_v5_gn_8_152860 Lactuca sativa HOM05D007686 ORTHO05D009709 5.1e-14 83.6 75 57.3
Nitab4.5_0001839g0010 Nicotiana tabacum HOM05D007686 ORTHO05D009709 5.1e-14 83.6 63 66.7
Hma1.2p1_0815F.1_g222720 Hydrangea macrophylla HOM05D007686 ORTHO05D009709 1.1e-13 82.4 61 65.6
ECA233G6157 Erigeron canadensis HOM05D007686 ORTHO05D009709 1.5e-13 82.0 72 59.7
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 1.9e-13 81.6 69 60.9
Gorai.012G173300 Gossypium raimondii HOM05D007686 ORTHO05D009709 2.5e-13 81.3 69 59.4
CsaV3_5G030960 Cucumis sativus L. HOM05D007686 ORTHO05D009709 3.3e-13 80.9 83 54.2
Rhsim12G0039200 Rhododendron simsii HOM05D007686 ORTHO05D009709 4.3e-13 80.5 53 69.8
MSTRG.555 Avicennia marina HOM05D007686 ORTHO05D009709 5.6e-13 80.1 69 58.0
AUR62011787 Chenopodium quinoa HOM05D007686 ORTHO05D009709 5.6e-13 80.1 55 70.9
Nitab4.5_0000067g0230 Nicotiana tabacum HOM05D007686 ORTHO05D009709 5.6e-13 80.1 63 65.1
Oeu056704.1 Olea europaea HOM05D007686 ORTHO05D009709 1.6e-12 78.6 64 57.8
QL03p056833 Quercus lobata HOM05D007686 ORTHO05D009709 1.6e-12 78.6 57 66.7
QL93p1848_0021 Quercus lobata HOM05D007686 ORTHO05D009709 1.6e-12 78.6 57 66.7
Sed0013465 Sechium edule HOM05D007686 ORTHO05D009709 2.8e-12 77.8 69 59.4
ClCG05G025900 Citrullus lanatus HOM05D007686 ORTHO05D009709 3.6e-12 77.4 79 53.2
EL10Ac7g16785 Beta vulgaris HOM05D007686 ORTHO05D009709 4.7e-12 77.0 51 72.5
SHI17831 Sapria himalayana HOM05D007686 ORTHO05D009709 4.7e-12 77.0 71 60.6
FvH4_4g25420 Fragaria vesca HOM05D007686 ORTHO05D009709 1.1e-11 75.9 47 70.2
Atru.chr11.2166 Acer truncatum HOM05D007686 ORTHO05D009709 1.8e-11 75.1 44 79.5
Eucgr.H02473 Eucalyptus grandis HOM05D007686 ORTHO05D009709 1.8e-11 75.1 68 55.9
Ah.10g031010 Amaranthus hybridus HOM05D007686 ORTHO05D009709 5.2e-11 73.6 54 63.0
Sc06g0009620 Simmondsia chinensis HOM05D007686 ORTHO05D009709 4.4e-10 70.5 45 71.1
PSO135G0590 Papaver somniferum HOM05D007686 ORTHO05D009709 5.8e-10 70.1 50 64.0
PSO724G0460 Papaver somniferum HOM05D007686 ORTHO05D009709 5.8e-10 70.1 50 64.0
Aqoxy2G03020 Aquilegia oxysepala HOM05D007686 ORTHO05D009709 1.3e-09 68.9 44 75.0
Oeu049173.1 Olea europaea HOM05D007686 ORTHO05D009709 1.3e-09 68.9 100 39.0
COL.COLO4_23488 Corchorus olitorius HOM05D007686 ORTHO05D009709 2.2e-09 68.2 48 66.7
TAR383G0079 Trochodendron aralioides HOM05D007686 ORTHO05D009709 1.4e-08 65.5 42 73.8
Sp1g11590 Schrenkiella parvula HOM05D007686 ORTHO05D009709 1.9e-08 65.1 56 57.1
Zm00001eb331140 Zea mays HOM05D007686 ORTHO05D009709 1.9e-08 65.1 71 49.3
AT1G13040 Arabidopsis thaliana HOM05D007686 ORTHO05D009709 3.2e-08 64.3 56 57.1
AL1G24690 Arabidopsis lyrata HOM05D007686 ORTHO05D009709 5.4e-08 63.5 56 57.1
Carub.0001s1279 Capsella rubella HOM05D007686 ORTHO05D009709 5.4e-08 63.5 56 57.1
THA.LOC104805275 Tarenaya hassleriana HOM05D007686 ORTHO05D009709 5.4e-08 63.5 53 62.3
Peaxi162Scf00207g01213 Petunia axillaris HOM05D007686 ORTHO05D009709 7.1e-08 63.2 49 57.1
BcaC05g25091 Brassica carinata HOM05D007686 ORTHO05D009709 9.3e-08 62.8 54 55.6
A06p08670 Brassica napus HOM05D002540 ORTHO05D002672 9.3e-08 62.8 54 55.6
BolC5t29774H Brassica oleracea HOM05D007686 ORTHO05D009709 9.3e-08 62.8 54 55.6
BraA06t24064Z Brassica rapa HOM05D007686 ORTHO05D009709 9.3e-08 62.8 54 55.6
Aa31LG1G1760 Aethionema arabicum HOM05D007686 ORTHO05D009709 1.2e-07 62.4 55 58.2
CARHR013370 Cardamine hirsuta HOM05D007686 ORTHO05D009709 1.2e-07 62.4 54 57.4
Carub.0002s0151 Capsella rubella HOM05D000162 ORTHO05D000090 1.6e-07 62.0 121 27.3
C05p10280 Brassica napus HOM05D002540 ORTHO05D002672 2.1e-07 61.6 54 53.7
Thhalv10007381m.g Eutrema salsugineum HOM05D007686 ORTHO05D009709 2.1e-07 61.6 54 55.6
C08p15790 Brassica napus HOM05D002540 ORTHO05D002672 3.5e-07 60.8 42 66.7
BolC8t49205H Brassica oleracea HOM05D002540 ORTHO05D002672 3.5e-07 60.8 42 66.7
A08p32500 Brassica napus HOM05D007686 ORTHO05D009709 1.0e-06 59.3 42 66.7
BraA08t35174Z Brassica rapa HOM05D007686 ORTHO05D009709 1.0e-06 59.3 42 66.7
HPP92_012781 Vanilla planifolia HOM05D007686 ORTHO05D009709 3.0e-06 57.8 42 59.5


User provided reference genes

Program Settings