Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0016922 Lotus japonicus HOM05D007285 ORTHO05D009224 8.3e-58 226.9 118 100.0
Ca_18554_v3 Cicer arietinum L. HOM05D007285 ORTHO05D009224 2.7e-40 168.7 118 78.8
TPR.G16329 Trifolium pratense HOM05D007285 ORTHO05D009224 6.0e-40 167.5 117 78.6
VMungo0251G0987 Vigna mungo HOM05D007285 ORTHO05D009224 1.5e-38 162.9 109 78.0
Phvul.002G229600 Phaseolus vulgaris HOM05D007285 ORTHO05D009224 1.9e-38 162.5 110 79.1
Lalb_Chr15g0089751 Lupinus albus HOM05D007285 ORTHO05D009224 7.3e-38 160.6 111 78.4
Medtr4g088680 Medicago truncatula HOM05D007285 ORTHO05D009224 2.8e-37 158.7 118 72.9
Glyma.07G198400 Glycine max HOM05D007285 ORTHO05D009224 3.1e-36 155.2 97 82.5
arahy.Tifrunner.gnm1.ann1.J7N80D Arachis hypogaea HOM05D007285 ORTHO05D009224 5.2e-36 154.5 112 76.8
arahy.Tifrunner.gnm1.ann1.VSLT1W Arachis hypogaea HOM05D007285 ORTHO05D009224 5.2e-36 154.5 112 76.8
Psat7g114520 Pisum sativum HOM05D007285 ORTHO05D009224 5.2e-36 154.5 105 81.0
Glyma.13G178000 Glycine max HOM05D007285 ORTHO05D009224 3.4e-35 151.8 95 83.2
PGR042G2867 Punica granatum HOM05D007285 ORTHO05D009224 1.4e-33 146.4 109 75.2
COL.COLO4_31450 Corchorus olitorius HOM05D007285 ORTHO05D009224 9.2e-33 143.7 96 79.2
Actinidia07587 Actinidia chinensis HOM05D007285 ORTHO05D009224 1.6e-32 142.9 118 71.2
Atru.chr10.1858 Acer truncatum HOM05D007285 ORTHO05D009224 2.7e-32 142.1 102 73.5
Ciclev10017252m.g Citrus clementina HOM05D007285 ORTHO05D009224 7.8e-32 140.6 107 68.2
CiPaw.09G061300 Carya illinoinensis HOM05D007285 ORTHO05D009224 1.0e-31 140.2 112 72.3
FAN21G1653 Fragaria x ananassa HOM05D007285 ORTHO05D009224 1.7e-31 139.4 110 65.5
Sed0001788 Sechium edule HOM05D007285 ORTHO05D009224 1.7e-31 139.4 101 74.3
ClCG03G008150 Citrullus lanatus HOM05D007285 ORTHO05D009224 2.3e-31 139.0 108 68.5
Potri.004G045400 Populus trichocarpa HOM05D007285 ORTHO05D009224 2.3e-31 139.0 102 75.5
FAN16G1611 Fragaria x ananassa HOM05D007285 ORTHO05D009224 3.9e-31 138.3 111 65.8
CsaV3_1G012400 Cucumis sativus L. HOM05D007285 ORTHO05D009224 5.1e-31 137.9 108 66.7
FAN25G3510 Fragaria x ananassa HOM05D007285 ORTHO05D009224 5.1e-31 137.9 101 70.3
FvH4_3g08990 Fragaria vesca HOM05D007285 ORTHO05D009224 6.6e-31 137.5 111 65.8
Prupe.4G049200 Prunus persica HOM05D007285 ORTHO05D009224 6.6e-31 137.5 111 66.7
Gohir.D06G133300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 1.1e-30 136.7 97 75.3
MD10G1292600 Malus domestica HOM05D007285 ORTHO05D009224 1.5e-30 136.3 105 68.6
RcHm_v2.0_Chr5g0008721 Rosa chinensis HOM05D007285 ORTHO05D009224 1.5e-30 136.3 110 68.2
Actinidia26129 Actinidia chinensis HOM05D007285 ORTHO05D009224 1.9e-30 136.0 109 71.6
Gorai.010G155100 Gossypium raimondii HOM05D007285 ORTHO05D009224 1.9e-30 136.0 97 75.3
MD00G1116000 Malus domestica HOM05D007285 ORTHO05D009224 3.3e-30 135.2 106 66.0
Sed0014393 Sechium edule HOM05D007285 ORTHO05D009224 3.3e-30 135.2 108 65.7
Thecc.06G185100 Theobroma cacao HOM05D007285 ORTHO05D009224 4.3e-30 134.8 108 68.5
Rhsim02G0132100 Rhododendron simsii HOM05D007285 ORTHO05D009224 1.2e-29 133.3 109 69.7
Dinv40575 Davidia involucrata HOM05D007285 ORTHO05D009224 2.8e-29 132.1 102 74.5
TWI63G1057 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 2.8e-29 132.1 95 73.7
Hma1.2p1_0208F.1_g088230 Hydrangea macrophylla HOM05D007285 ORTHO05D009224 6.2e-29 131.0 102 72.5
Manes.17G046800 Manihot esculenta HOM05D007285 ORTHO05D009224 6.2e-29 131.0 100 73.0
Gohir.A06G129300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 8.1e-29 130.6 97 72.2
CSS0032734 Camellia sinensis var. sinensis HOM05D007285 ORTHO05D009224 8.9e-28 127.1 109 67.9
SalBow8G5072 Salvia bowleyana HOM05D007285 ORTHO05D009224 8.9e-28 127.1 99 70.7
Hund23773 Selenicereus undatus HOM05D007285 ORTHO05D009224 8.9e-28 127.1 104 70.2
SGA_v2.0_scaffold100G29692 Striga asiatica HOM05D007285 ORTHO05D009224 8.9e-28 127.1 99 71.7
TWI38G2229 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 8.9e-28 127.1 102 64.7
EL10Ac8g20395 Beta vulgaris HOM05D007285 ORTHO05D009224 2.0e-27 125.9 113 64.6
THA.LOC104820545 Tarenaya hassleriana HOM05D007285 ORTHO05D009224 2.0e-27 125.9 101 65.3
MSTRG.7339 Avicennia marina HOM05D007285 ORTHO05D009224 5.8e-27 124.4 108 65.7
Eucgr.E03264 Eucalyptus grandis HOM05D007285 ORTHO05D009224 5.8e-27 124.4 114 60.5
Nitab4.5_0005745g0020 Nicotiana tabacum HOM05D007285 ORTHO05D009224 7.6e-27 124.0 105 66.7
Dinv17325 Davidia involucrata HOM05D007285 ORTHO05D009224 9.9e-27 123.6 101 75.2
Peaxi162Scf00623g00519 Petunia axillaris HOM05D007285 ORTHO05D009224 1.7e-26 122.9 100 68.0
AUR62017028 Chenopodium quinoa HOM05D007285 ORTHO05D009224 2.2e-26 122.5 113 64.6
Cc02_g13540 Coffea canephora HOM05D007285 ORTHO05D009224 3.8e-26 121.7 97 70.1
Lsat_1_v5_gn_4_52261 Lactuca sativa HOM05D007285 ORTHO05D009224 3.8e-26 121.7 111 63.1
Aa31LG6G10160 Aethionema arabicum HOM05D007285 ORTHO05D009224 4.9e-26 121.3 99 64.6
Migut.M01131 Erythranthe guttata HOM05D007285 ORTHO05D009224 6.4e-26 120.9 108 64.8
Sopen02g022850 Solanum pennellii HOM05D007285 ORTHO05D009224 1.4e-25 119.8 106 66.0
Ah.09g237440 Amaranthus hybridus HOM05D007285 ORTHO05D009224 1.9e-25 119.4 111 61.3
Solyc02g078010.4 Solanum lycopersicum HOM05D007285 ORTHO05D009224 1.9e-25 119.4 106 66.0
Carub.0001s2669 Capsella rubella HOM05D007285 ORTHO05D009224 5.4e-25 117.9 104 58.7
CARHR027740 Cardamine hirsuta HOM05D007285 ORTHO05D009224 5.4e-25 117.9 100 61.0
Nn1g04136 Nelumbo nucifera HOM05D007285 ORTHO05D009224 5.4e-25 117.9 101 65.3
Sc05g0007570 Simmondsia chinensis HOM05D007285 ORTHO05D009224 7.1e-25 117.5 112 61.6
unitig_27.g24965 Utricularia gibba HOM05D007285 ORTHO05D009224 7.1e-25 117.5 111 61.3
AL1G41800 Arabidopsis lyrata HOM05D007285 ORTHO05D009224 9.3e-25 117.1 101 60.4
CAN.G529.14 Capsicum annuum HOM05D007285 ORTHO05D009224 9.3e-25 117.1 104 65.4
AT1G28250 Arabidopsis thaliana HOM05D007285 ORTHO05D009224 1.2e-24 116.7 93 64.5
PSO541G0778 Papaver somniferum HOM05D007285 ORTHO05D009224 1.6e-24 116.3 107 61.7
CANSAT35G0751 Cannabis sativa HOM05D007285 ORTHO05D009224 2.7e-24 115.5 110 62.7
HanXRQChr14g0435131 Helianthus annuus HOM05D007285 ORTHO05D009224 2.7e-24 115.5 102 65.7
BolC3t19748H Brassica oleracea HOM05D007285 ORTHO05D009224 3.5e-24 115.2 101 59.4
TAR626G1757 Trochodendron aralioides HOM05D007285 ORTHO05D009224 2.3e-23 112.5 101 63.4
BcaB07g32433 Brassica carinata HOM05D007285 ORTHO05D009224 1.1e-22 110.2 101 55.4
Haze_06424 Corylus avellana HOM05D007285 ORTHO05D009224 1.1e-22 110.2 81 75.3
A09p37820 Brassica napus HOM05D007285 ORTHO05D009224 1.5e-22 109.8 90 62.2
BraA09t39294Z Brassica rapa HOM05D007285 ORTHO05D009224 1.5e-22 109.8 90 62.2
BcaC05g26830 Brassica carinata HOM05D007285 ORTHO05D009224 3.3e-22 108.6 90 61.1
C05p27060 Brassica napus HOM05D007285 ORTHO05D009224 3.3e-22 108.6 90 61.1
Thhalv10009792m.g Eutrema salsugineum HOM05D007285 ORTHO05D009224 3.3e-22 108.6 108 56.5
Sabra04G0028300 Salix brachista HOM05D007285 ORTHO05D009224 9.6e-22 107.1 154 48.7
DCAR_008032 Daucus carota HOM05D007285 ORTHO05D009224 1.3e-21 106.7 107 60.7
ATR0763G085 Amborella trichopoda HOM05D007285 ORTHO05D009224 8.1e-21 104.0 106 55.7
QL05p041285 Quercus lobata HOM05D007285 ORTHO05D009224 5.3e-20 101.3 79 70.9
BcaC01g00030 Brassica carinata HOM05D007285 ORTHO05D009224 6.9e-20 100.9 127 47.2
MELO3C002614.2 Cucumis melo HOM05D007285 ORTHO05D009224 6.9e-20 100.9 68 76.5
CDE01G0551 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 3.4e-19 98.6 106 52.8
BolC5t31425H Brassica oleracea HOM05D007285 ORTHO05D009224 7.6e-19 97.4 108 50.9
HPP92_007016 Vanilla planifolia HOM05D007285 ORTHO05D009224 1.3e-18 96.7 102 55.9
Zm00001eb305570 Zea mays HOM05D007285 ORTHO05D009224 8.4e-18 94.0 103 52.4
BcaB03g12118 Brassica carinata HOM05D007285 ORTHO05D009224 2.4e-17 92.4 80 58.8
vmacro15913 Vaccinium macrocarpon HOM05D007285 ORTHO05D009224 2.4e-17 92.4 80 67.5
ECA234G4273 Erigeron canadensis HOM05D007285 ORTHO05D009224 3.2e-17 92.0 70 74.3
PGSC0003DMG401029703 Solanum tuberosum HOM05D007285 ORTHO05D009224 7.1e-17 90.9 91 60.4
SEGI_38595 Sequoiadendron giganteum HOM05D007285 ORTHO05D009224 6.0e-16 87.8 92 53.3
SalBow8G3155 Salvia bowleyana HOM05D007285 ORTHO05D009224 3.9e-15 85.1 66 71.2
Mapoly0007s0165 Marchantia polymorpha HOM05D007285 ORTHO05D009224 1.9e-14 82.8 109 44.0
DCAR_004065 Daucus carota HOM05D007285 ORTHO05D009224 7.4e-14 80.9 81 63.0
Pp3c8_510 Physcomitrium patens HOM05D007285 ORTHO05D009224 9.6e-14 80.5 91 48.4
C03p74970 Brassica napus HOM05D007285 ORTHO05D009224 1.8e-12 76.3 108 42.6
Os07g0299600 Oryza sativa ssp. japonica HOM05D007285 ORTHO05D009224 9.0e-12 73.9 85 50.6
CDE12G0235 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 3.8e-10 68.6 102 47.1
SMO229G0021 Selaginella moellendorffii HOM05D007397 ORTHO05D009336 9.6e-06 53.9 65 47.7


User provided reference genes

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