Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0016834 Lotus japonicus HOM05D005769 ORTHO05D006851 4.3e-87 324.7 173 100.0
LjContig00351g0007061 Lotus japonicus HOM05D005769 ORTHO05D006851 3.4e-84 315.1 173 97.7
arahy.Tifrunner.gnm1.ann1.B7V00M Arachis hypogaea HOM05D005769 ORTHO05D006851 7.9e-57 224.2 175 74.3
arahy.Tifrunner.gnm1.ann1.B9FWIC Arachis hypogaea HOM05D005769 ORTHO05D006851 1.3e-56 223.4 175 74.3
Ca_06306_v3 Cicer arietinum L. HOM05D005769 ORTHO05D006851 6.9e-53 211.1 181 71.8
Glyma.14G025400 Glycine max HOM05D005769 ORTHO05D006851 1.2e-52 210.3 175 73.7
Lalb_Chr04g0248581 Lupinus albus HOM05D005769 ORTHO05D006851 8.4e-51 204.1 175 68.0
Phvul.008G265600 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 1.9e-50 203.0 175 72.0
VMungo0647G1996 Vigna mungo HOM05D005769 ORTHO05D006851 7.9e-49 197.6 178 70.2
Medtr5g092090 Medicago truncatula HOM05D005769 ORTHO05D006851 1.0e-48 197.2 184 70.7
Glyma.02G289500 Glycine max HOM05D005769 ORTHO05D006851 1.8e-48 196.4 175 68.6
Cfa020385 Carpinus fangiana HOM05D005769 ORTHO05D006851 4.6e-41 171.8 175 60.0
Haze_09647 Corylus avellana HOM05D005769 ORTHO05D006851 7.9e-41 171.0 175 59.4
Thecc.07G043800 Theobroma cacao HOM05D005769 ORTHO05D006851 3.0e-40 169.1 175 57.7
QL08p012043 Quercus lobata HOM05D005769 ORTHO05D006851 3.3e-39 165.6 177 59.9
QL08p011874 Quercus lobata HOM05D005769 ORTHO05D006851 7.4e-39 164.5 177 59.3
Prupe.4G209200 Prunus persica HOM05D005769 ORTHO05D006851 9.7e-39 164.1 175 58.3
Potri.001G421000 Populus trichocarpa HOM05D005769 ORTHO05D006851 3.7e-38 162.2 173 55.5
Dinv40735 Davidia involucrata HOM05D005769 ORTHO05D006851 1.4e-37 160.2 173 57.2
COL.COLO4_09632 Corchorus olitorius HOM05D005769 ORTHO05D006851 1.8e-37 159.8 176 55.7
Duzib170G0312 Durio zibethinus HOM05D005769 ORTHO05D006851 1.8e-37 159.8 175 56.6
Sabra16G0285900 Salix brachista HOM05D005769 ORTHO05D006851 2.4e-37 159.5 169 55.6
Manes.03G126700 Manihot esculenta HOM05D005769 ORTHO05D006851 4.1e-37 158.7 175 56.6
MD11G1222100 Malus domestica HOM05D005769 ORTHO05D006851 5.3e-37 158.3 175 56.6
Duzib213G1024 Durio zibethinus HOM05D005769 ORTHO05D006851 2.0e-36 156.4 175 56.6
Cpa.g.sc97.35 Carica papaya HOM05D005769 ORTHO05D006851 4.5e-36 155.2 175 53.7
CiPaw.12G128000 Carya illinoinensis HOM05D005769 ORTHO05D006851 4.5e-36 155.2 175 56.0
Nn1g03582 Nelumbo nucifera HOM05D005769 ORTHO05D006851 4.5e-36 155.2 178 57.3
CiPaw.11G187200 Carya illinoinensis HOM05D005769 ORTHO05D006851 5.9e-36 154.8 175 56.0
Ciclev10010329m.g Citrus clementina HOM05D005769 ORTHO05D006851 5.9e-36 154.8 176 55.7
Psat2g015240 Pisum sativum HOM05D005769 ORTHO05D006851 1.0e-35 154.1 182 60.4
Gohir.A01G077900 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.7e-35 153.3 178 55.1
TWI38G1097 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 1.7e-35 153.3 175 54.9
Lj6g0021335 Lotus japonicus HOM05D005769 ORTHO05D006851 2.2e-35 152.9 173 59.0
Gorai.002G086700 Gossypium raimondii HOM05D005769 ORTHO05D006851 6.5e-35 151.4 178 54.5
Gohir.D01G065000 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.1e-34 150.6 176 54.5
PGR031G3409 Punica granatum HOM05D005769 ORTHO05D006851 4.2e-34 148.7 175 55.4
RcHm_v2.0_Chr5g0038281 Rosa chinensis HOM05D005769 ORTHO05D006851 5.5e-34 148.3 175 54.9
Glyma.18G101700 Glycine max HOM05D005769 ORTHO05D006851 9.4e-34 147.5 170 55.9
FAN16G0333 Fragaria x ananassa HOM05D005769 ORTHO05D006851 1.6e-33 146.7 175 53.1
FvH4_3g22210 Fragaria vesca HOM05D005769 ORTHO05D006851 2.1e-33 146.4 175 53.1
FAN11G0604 Fragaria x ananassa HOM05D005769 ORTHO05D006851 2.1e-33 146.4 175 53.1
Hma1.2p1_1271F.1_g271830 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 2.7e-33 146.0 175 51.4
Hma1.2p1_1609F.1_g293426 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 2.7e-33 146.0 175 51.4
Potri.011G136600 Populus trichocarpa HOM05D005769 ORTHO05D006851 4.7e-33 145.2 175 49.7
FAN21G0668 Fragaria x ananassa HOM05D005769 ORTHO05D006851 6.1e-33 144.8 175 53.1
VMungo0540G0361 Vigna mungo HOM05D005769 ORTHO05D006851 7.9e-33 144.4 170 55.9
FAN25G3736 Fragaria x ananassa HOM05D005769 ORTHO05D006851 1.4e-32 143.7 175 52.6
Gorai.009G425000 Gossypium raimondii HOM05D005769 ORTHO05D006851 1.4e-32 143.7 176 53.4
CANSAT21G1553 Cannabis sativa HOM05D005769 ORTHO05D006851 1.8e-32 143.3 175 54.3
Gohir.D05G366600 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.3e-32 142.9 176 53.4
Gohir.A04G019100 Gossypium hirsutum HOM05D005769 ORTHO05D006851 3.9e-32 142.1 176 52.8
Manes.15G073700 Manihot esculenta HOM05D005769 ORTHO05D006851 6.7e-32 141.4 175 52.6
TAR626G0147 Trochodendron aralioides HOM05D005769 ORTHO05D006851 6.7e-32 141.4 176 52.3
TWI39G0743 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 1.1e-31 140.6 175 50.3
Atru.chr2.3278 Acer truncatum HOM05D005769 ORTHO05D006851 7.4e-31 137.9 175 50.3
arahy.Tifrunner.gnm1.ann1.0M423A Arachis hypogaea HOM05D005769 ORTHO05D006851 1.3e-30 137.1 177 52.5
Glyma.09G100100 Glycine max HOM05D005769 ORTHO05D006851 1.7e-30 136.7 170 52.9
THA.LOC104813420 Tarenaya hassleriana HOM05D005769 ORTHO05D006851 1.7e-30 136.7 170 50.0
Rhsim04G0001000 Rhododendron simsii HOM05D005769 ORTHO05D006851 9.1e-29 131.0 176 51.1
Phvul.006G038800 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 1.2e-28 130.6 170 55.3
Aqoxy1G03294 Aquilegia oxysepala HOM05D005769 ORTHO05D006851 2.6e-28 129.4 174 49.4
Rhsim04G0002100 Rhododendron simsii HOM05D005769 ORTHO05D006851 2.6e-28 129.4 176 50.6
PGSC0003DMG400014393 Solanum tuberosum HOM05D005769 ORTHO05D006851 7.7e-28 127.9 175 47.4
Nitab4.5_0000749g0110 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.3e-27 127.1 175 49.1
Nitab4.5_0000653g0070 Nicotiana tabacum HOM05D005769 ORTHO05D006851 2.2e-27 126.3 175 49.1
Solyc10g006360.2 Solanum lycopersicum HOM05D005769 ORTHO05D006851 3.8e-27 125.6 175 46.9
Sopen10g002310 Solanum pennellii HOM05D005769 ORTHO05D006851 3.8e-27 125.6 175 46.9
Nitab4.5_0000397g0340 Nicotiana tabacum HOM05D005769 ORTHO05D006851 5.0e-27 125.2 172 48.3
ClCG05G014450 Citrullus lanatus HOM05D005769 ORTHO05D006851 1.5e-26 123.6 173 48.6
AL8G30290 Arabidopsis lyrata HOM05D005769 ORTHO05D006851 1.9e-26 123.2 214 41.1
Lj8E167T2 Lonicera japonica HOM05D005769 ORTHO05D006851 5.5e-26 121.7 175 48.6
AT5G54850 Arabidopsis thaliana HOM05D005769 ORTHO05D006851 9.4e-26 120.9 214 40.2
MSTRG.6907 Avicennia marina HOM05D005769 ORTHO05D006851 1.2e-25 120.6 171 44.4
Lj1P869T51 Lonicera japonica HOM05D005769 ORTHO05D006851 2.1e-25 119.8 174 47.7
Peaxi162Scf01097g00025 Petunia axillaris HOM05D005769 ORTHO05D006851 3.6e-25 119.0 175 45.1
Sed0023999 Sechium edule HOM05D005769 ORTHO05D006851 4.7e-25 118.6 173 46.2
Oeu005460.1 Olea europaea HOM05D005769 ORTHO05D006851 8.0e-25 117.9 172 46.5
BcaC04g20292 Brassica carinata HOM05D005769 ORTHO05D006851 1.0e-24 117.5 191 42.4
C09p45400 Brassica napus HOM05D005769 ORTHO05D006851 1.0e-24 117.5 191 42.4
BolC9t57410H Brassica oleracea HOM05D005769 ORTHO05D006851 1.0e-24 117.5 191 42.4
BraA10t43314Z Brassica rapa HOM05D005769 ORTHO05D006851 1.0e-24 117.5 191 42.4
Nitab4.5_0013016g0010 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.4e-24 117.1 164 47.6
A10p12180 Brassica napus HOM05D005769 ORTHO05D006851 1.8e-24 116.7 221 39.8
BcaB08g35851 Brassica carinata HOM05D005769 ORTHO05D006851 8.8e-24 114.4 191 40.3
CARHR268180 Cardamine hirsuta HOM05D005769 ORTHO05D006851 2.6e-23 112.8 193 38.9
Aa31LG3G10760 Aethionema arabicum HOM05D005769 ORTHO05D006851 4.4e-23 112.1 173 42.8
Cc05_g13510 Coffea canephora HOM05D005769 ORTHO05D006851 7.5e-23 111.3 175 45.7
Peaxi162Scf00450g00084 Petunia axillaris HOM05D005769 ORTHO05D006851 1.7e-22 110.2 175 46.3
CAN.G337.106 Capsicum annuum HOM05D005769 ORTHO05D006851 2.2e-22 109.8 187 43.9
PSO832G0238 Papaver somniferum HOM05D005769 ORTHO05D006851 2.8e-22 109.4 175 44.6
Migut.H01842 Erythranthe guttata HOM05D005769 ORTHO05D006851 6.3e-22 108.2 177 45.2
MELO3C018076.2 Cucumis melo HOM05D005769 ORTHO05D006851 8.2e-22 107.8 173 46.2
SalBow7G1695 Salvia bowleyana HOM05D005769 ORTHO05D006851 8.2e-22 107.8 179 44.1
Sed0008399 Sechium edule HOM05D005769 ORTHO05D006851 1.8e-21 106.7 173 43.4
CsaV3_3G023280 Cucumis sativus L. HOM05D005769 ORTHO05D006851 2.4e-21 106.3 173 44.5
Migut.M01783 Erythranthe guttata HOM05D005769 ORTHO05D006851 2.4e-21 106.3 171 42.7
Sp6g16810 Schrenkiella parvula HOM05D005769 ORTHO05D006851 7.0e-21 104.8 193 38.3
PGSC0003DMG400001093 Solanum tuberosum HOM05D005769 ORTHO05D006851 9.1e-21 104.4 175 44.6
unitig_0.g2389 Utricularia gibba HOM05D005769 ORTHO05D006851 1.6e-20 103.6 175 43.4
Lalb_Chr10g0106921 Lupinus albus HOM05D005769 ORTHO05D006851 2.0e-20 103.2 134 54.5
Thhalv10014809m.g Eutrema salsugineum HOM05D005769 ORTHO05D006851 5.9e-20 101.7 193 37.8
Carub.0008s1514 Capsella rubella HOM05D005769 ORTHO05D006851 1.0e-19 100.9 179 39.1
PGSC0003DMG400013920 Solanum tuberosum HOM05D005769 ORTHO05D006851 2.9e-19 99.4 175 42.9
Solyc07g064320.3 Solanum lycopersicum HOM05D005769 ORTHO05D006851 5.0e-19 98.6 175 41.7
Sopen07g032470 Solanum pennellii HOM05D005769 ORTHO05D006851 6.5e-19 98.2 175 41.7
PSO675G2145 Papaver somniferum HOM05D005769 ORTHO05D006851 8.5e-19 97.8 170 43.5
ECA236G2121 Erigeron canadensis HOM05D005769 ORTHO05D006851 1.9e-18 96.7 181 38.1
HanXRQChr11g0336271 Helianthus annuus HOM05D005769 ORTHO05D006851 3.2e-18 95.9 173 42.8
PSO541G5959 Papaver somniferum HOM05D005769 ORTHO05D006851 1.6e-17 93.6 169 42.6
Sc16g0006260 Simmondsia chinensis HOM05D005769 ORTHO05D006851 1.6e-17 93.6 206 37.9
AUR62015707 Chenopodium quinoa HOM05D005769 ORTHO05D006851 2.1e-17 93.2 177 40.1
AUR62020499 Chenopodium quinoa HOM05D005769 ORTHO05D006851 2.7e-17 92.8 178 42.1
MBI18_g09843_MAGBIO Magnolia biondii HOM05D005769 ORTHO05D006851 3.6e-17 92.4 145 48.3
Actinidia09713 Actinidia chinensis HOM05D005769 ORTHO05D006851 1.5e-15 87.0 160 43.1
SGA_v2.0_scaffold8G04301 Striga asiatica HOM05D005769 ORTHO05D006851 2.0e-15 86.7 176 38.1
ECA234G1543 Erigeron canadensis HOM05D005769 ORTHO05D006851 3.4e-15 85.9 164 36.6
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 1.3e-14 84.0 153 44.4
Hma1.2p1_0328F.1_g126860 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 1.3e-14 84.0 170 38.8
Hma1.2p1_1748F.1_g300680 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 1.7e-14 83.6 169 38.5
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.8e-14 82.8 160 39.4
CSS0032413 Camellia sinensis var. sinensis HOM05D005769 ORTHO05D006851 1.1e-13 80.9 160 33.8
Oeu062604.3 Olea europaea HOM05D005769 ORTHO05D006851 7.0e-13 78.2 150 44.7
Zm00001eb322840 Zea mays HOM05D005769 ORTHO05D006851 1.6e-12 77.0 172 39.0
ATR0752G130 Amborella trichopoda HOM05D005769 ORTHO05D006851 4.5e-12 75.5 185 36.2
HPP92_014114 Vanilla planifolia HOM05D005769 ORTHO05D006851 4.5e-12 75.5 165 39.4
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 1.0e-11 74.3 158 39.9
Cc05_g04810 Coffea canephora HOM05D005769 ORTHO05D006851 1.5e-10 70.5 158 33.5
HanXRQChr05g0159131 Helianthus annuus HOM05D005769 ORTHO05D006851 7.2e-10 68.2 170 37.6
Lsat_1_v5_gn_5_125321 Lactuca sativa HOM05D005769 ORTHO05D006851 9.4e-10 67.8 179 32.4
Oeu021395.2 Olea europaea HOM05D005769 ORTHO05D006851 3.7e-06 55.8 78 39.7
HPP92_012322 Vanilla planifolia HOM05D005769 ORTHO05D006851 3.7e-06 55.8 166 33.7
HPP92_012395 Vanilla planifolia HOM05D005769 ORTHO05D006851 3.7e-06 55.8 166 33.1
DCAR_021174 Daucus carota HOM05D005769 ORTHO05D006851 8.3e-06 54.7 165 32.1
SEGI_38354 Sequoiadendron giganteum HOM05D005769 ORTHO05D006851 8.3e-06 54.7 67 44.8


User provided reference genes

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