Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 1.4e-123 446.4 242 100.0
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 5.4e-112 407.9 242 88.8
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 3.5e-111 405.2 242 88.0
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 3.0e-110 402.1 242 86.8
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 1.6e-108 396.4 242 86.4
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 2.3e-107 392.5 242 86.4
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 7.3e-101 370.9 245 81.2
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 3.1e-99 365.5 246 80.9
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 2.6e-98 362.5 242 79.3
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 9.9e-98 360.5 243 80.7
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 9.9e-98 360.5 242 78.9
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 2.4e-96 355.9 242 78.1
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 2.1e-95 352.8 230 81.7
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 7.8e-95 350.9 242 76.4
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 1.0e-94 350.5 242 77.3
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 1.3e-94 350.1 243 77.4
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 1.7e-94 349.7 242 78.1
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 6.6e-94 347.8 242 76.4
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.5e-93 346.7 242 77.3
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 2.5e-93 345.9 242 77.3
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 3.3e-93 345.5 242 76.0
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 4.3e-93 345.1 242 76.0
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 4.3e-93 345.1 242 76.0
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 5.6e-93 344.7 242 75.2
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 7.3e-93 344.4 242 76.4
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 9.6e-93 344.0 244 76.2
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 1.2e-92 343.6 243 75.7
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 2.8e-92 342.4 279 69.9
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 3.6e-92 342.0 242 76.9
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 3.6e-92 342.0 242 75.6
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 1.1e-91 340.5 243 76.1
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 1.4e-91 340.1 242 76.0
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.8e-91 339.7 242 75.2
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 2.4e-91 339.3 242 75.6
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 3.1e-91 339.0 242 75.6
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 4.0e-91 338.6 242 75.2
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 4.0e-91 338.6 243 76.1
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 5.2e-91 338.2 242 74.8
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 1.2e-90 337.0 243 75.3
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.2e-90 337.0 242 72.3
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 1.2e-90 337.0 242 74.4
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.0e-90 336.3 242 75.2
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 2.6e-90 335.9 242 74.8
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 3.4e-90 335.5 242 75.2
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 3.4e-90 335.5 241 74.7
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 1.3e-89 333.6 242 74.4
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 4.9e-89 331.6 242 74.4
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 6.4e-89 331.3 243 75.7
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 1.4e-88 330.1 227 76.7
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 3.2e-88 328.9 243 72.8
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.2e-88 328.9 245 73.9
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 7.1e-88 327.8 228 74.6
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 1.2e-87 327.0 220 78.2
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.2e-87 327.0 243 74.1
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 1.6e-87 326.6 245 73.9
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.6e-87 326.6 243 74.9
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 2.7e-87 325.9 243 72.4
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 2.7e-87 325.9 243 72.8
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 3.5e-87 325.5 242 71.9
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 6.0e-87 324.7 242 71.1
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 1.7e-86 323.2 245 73.5
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 2.3e-86 322.8 242 72.7
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 5.1e-86 321.6 244 71.7
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 6.6e-86 321.2 283 65.0
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 8.7e-86 320.9 245 71.4
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 1.5e-85 320.1 246 72.0
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 2.5e-85 319.3 242 71.5
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 3.3e-85 318.9 242 69.8
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 7.3e-85 317.8 242 68.6
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 2.8e-84 315.8 242 69.8
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 3.6e-84 315.5 242 69.4
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 8.1e-84 314.3 242 69.0
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 1.1e-83 313.9 242 68.6
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 1.8e-83 313.2 242 68.6
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 2.4e-83 312.8 243 71.2
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 3.1e-83 312.4 242 68.6
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.1e-83 312.4 242 71.5
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 4.0e-83 312.0 242 68.2
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 6.9e-83 311.2 242 68.6
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 6.9e-83 311.2 242 68.6
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 6.9e-83 311.2 242 69.0
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 9.0e-83 310.8 242 68.6
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 1.2e-82 310.5 240 71.7
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 4.4e-82 308.5 243 68.3
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 4.4e-82 308.5 244 70.9
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 5.8e-82 308.1 230 72.2
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 7.6e-82 307.8 221 75.1
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 9.9e-82 307.4 240 71.7
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 9.9e-82 307.4 238 69.3
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 1.7e-81 306.6 243 68.3
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 1.7e-81 306.6 243 68.3
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 1.7e-81 306.6 244 69.3
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 3.8e-81 305.4 242 66.5
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 1.1e-80 303.9 239 70.3
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 1.4e-80 303.5 244 69.7
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 1.9e-80 303.1 247 66.4
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 1.9e-80 303.1 244 69.3
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.9e-80 303.1 242 66.5
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 2.4e-80 302.8 222 73.9
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 2.4e-80 302.8 291 59.1
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 3.2e-80 302.4 244 70.5
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 4.2e-80 302.0 244 67.2
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 5.4e-80 301.6 245 67.3
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 7.1e-80 301.2 232 72.0
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.6e-79 300.1 223 71.3
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 2.1e-79 299.7 245 67.3
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 4.6e-79 298.5 244 69.7
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 6.0e-79 298.1 197 81.2
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 7.9e-79 297.7 198 81.3
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.0e-78 297.4 259 66.0
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 3.9e-78 295.4 245 67.3
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 6.6e-78 294.7 259 66.0
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 3.3e-77 292.4 175 88.0
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 1.3e-76 290.4 197 79.2
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.6e-76 290.0 197 78.7
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 2.8e-76 289.3 197 80.7
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 3.6e-76 288.9 199 76.4
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 2.4e-75 286.2 245 65.7
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 9.0e-75 284.3 197 76.6
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 9.0e-75 284.3 200 76.5
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.5e-74 283.5 200 77.0
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.0e-74 283.1 200 76.5
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 3.4e-74 282.3 282 59.9
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 5.8e-74 281.6 245 64.1
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.7e-73 280.0 200 76.0
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 2.4e-72 276.2 239 64.9
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 2.4e-72 276.2 289 57.8
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 7.1e-72 274.6 197 74.6
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 5.6e-69 265.0 197 71.1
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 2.9e-65 252.7 179 72.6
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 2.1e-63 246.5 220 62.7
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 7.9e-63 244.6 189 68.3
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 8.4e-57 224.6 197 65.5
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 1.1e-53 214.2 223 56.5
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 9.7e-53 211.1 156 74.4
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 2.4e-51 206.5 130 82.3
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 1.4e-48 197.2 135 76.3
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 6.3e-44 181.8 156 64.1
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 3.2e-40 169.5 113 78.8
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 3.6e-39 166.0 167 56.3
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 2.6e-34 149.8 150 59.3
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 6.5e-33 145.2 199 43.2
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.7e-28 130.6 220 41.8
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 6.3e-28 128.6 223 35.4
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.5e-26 122.9 233 41.6
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 3.5e-26 122.9 210 37.1
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 5.0e-25 119.0 236 39.0
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 4.0e-22 109.4 85 67.1
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 1.5e-21 107.5 98 62.2
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 2.2e-20 103.6 199 34.7
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 8.3e-20 101.7 214 32.7
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 1.5e-16 90.9 67 71.6
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 4.2e-16 89.4 64 79.7
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 2.0e-13 80.5 64 68.8
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.8e-11 73.9 178 36.5
SMO367G0772 Selaginella moellendorffii HOM05D002293 ORTHO05D005475 4.3e-08 62.8 216 28.2
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.4e-06 57.8 41 75.6
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 1.8e-06 57.4 40 77.5


User provided reference genes

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