Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 5.6e-176 620.9 334 100.0
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 8.5e-116 421.0 381 68.8
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 1.4e-115 420.2 385 67.3
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 1.2e-114 417.2 382 68.1
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.0e-113 414.1 375 66.4
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 1.6e-109 400.2 386 65.5
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 1.6e-109 400.2 376 64.6
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 9.4e-99 364.4 378 60.6
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 9.4e-99 364.4 378 60.6
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 5.2e-97 358.6 382 59.9
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 5.2e-97 358.6 355 63.1
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.0e-93 346.7 380 59.7
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 1.0e-92 344.4 379 58.3
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 2.1e-90 336.7 356 61.8
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 4.7e-90 335.5 381 58.0
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 8.0e-90 334.7 380 57.4
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 1.2e-88 330.9 377 57.6
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 9.2e-78 294.7 376 54.5
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 1.1e-70 271.2 379 52.2
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 7.8e-69 265.0 378 48.1
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 8.1e-66 255.0 376 47.1
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.4e-65 254.2 374 46.3
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 2.0e-64 250.4 392 47.2
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 4.4e-64 249.2 381 47.8
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 5.8e-64 248.8 395 45.3
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.4e-62 244.2 388 46.9
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 5.1e-60 235.7 373 44.8
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 6.6e-60 235.3 392 43.9
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 2.1e-58 230.3 374 44.1
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.1e-58 230.3 374 44.1
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 2.8e-58 229.9 376 44.4
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 6.2e-58 228.8 374 43.9
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 1.4e-57 227.6 385 44.9
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 2.6e-56 223.4 375 42.9
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 3.4e-56 223.0 375 43.7
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 7.6e-56 221.9 392 43.4
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 3.8e-55 219.5 382 43.5
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.1e-54 218.0 391 43.0
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.5e-53 213.0 374 42.8
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 5.1e-52 209.1 375 42.1
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 5.1e-52 209.1 375 42.1
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 8.6e-52 208.4 379 42.5
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.5e-51 207.6 379 43.0
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.1e-50 203.8 379 43.3
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 3.6e-50 203.0 375 42.1
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 4.7e-50 202.6 375 44.8
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 6.2e-50 202.2 355 43.7
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.8e-49 200.7 378 41.8
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 3.1e-49 199.9 375 44.0
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 4.0e-49 199.5 374 41.4
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 8.9e-49 198.4 384 41.7
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 1.2e-48 198.0 382 41.1
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 1.2e-48 198.0 382 41.9
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 7.6e-48 195.3 327 45.0
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 9.9e-48 194.9 347 42.9
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 2.9e-47 193.4 352 43.5
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.9e-47 192.6 386 41.2
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 1.1e-46 191.4 393 41.7
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 5.4e-46 189.1 390 41.0
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.6e-45 187.6 388 40.7
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 2.7e-45 186.8 381 39.9
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 3.0e-44 183.3 383 42.0
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 3.6e-42 176.4 379 38.5
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 9.0e-41 171.8 379 39.8
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 1.2e-40 171.4 378 39.4
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.5e-40 171.0 380 38.4
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 3.4e-40 169.9 393 37.2
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 2.2e-39 167.2 379 38.3
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 2.9e-39 166.8 376 38.8
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 1.4e-38 164.5 379 39.6
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 5.4e-38 162.5 372 39.2
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 2.1e-37 160.6 383 39.4
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 3.5e-37 159.8 380 38.4
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 2.3e-36 157.1 376 37.5
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 8.7e-36 155.2 379 35.9
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 1.5e-35 154.5 391 37.1
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 5.6e-35 152.5 362 37.0
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 5.6e-35 152.5 393 36.1
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 9.0e-33 145.2 374 36.9
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 2.0e-32 144.1 363 37.7
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 3.4e-32 143.3 274 41.2
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 3.4e-32 143.3 363 36.4
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 5.8e-32 142.5 370 35.7
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 5.8e-32 142.5 370 35.7
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.3e-31 141.4 392 34.7
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 3.2e-30 136.7 391 34.0
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 3.2e-30 136.7 391 34.3
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 4.2e-30 136.3 392 34.7
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 5.5e-30 136.0 385 34.0
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.2e-29 134.8 367 37.6
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.2e-29 134.8 373 36.2
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 1.6e-29 134.4 381 34.6
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 6.0e-29 132.5 375 34.1
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 7.9e-29 132.1 369 36.6
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 7.9e-29 132.1 369 36.6
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.9e-27 127.5 340 37.6
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.5e-27 127.1 339 37.5
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.3e-27 126.3 340 37.4
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 2.8e-26 123.6 392 32.4
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 4.5e-24 116.3 323 36.5
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 7.6e-24 115.5 376 32.4
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.0e-23 115.2 372 34.1
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 1.0e-23 115.2 383 34.7
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.3e-23 114.8 383 34.5
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 2.9e-23 113.6 371 33.4
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 6.5e-23 112.5 366 33.6
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 2.5e-22 110.5 301 38.2
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 3.2e-22 110.2 378 32.5
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 7.1e-22 109.0 378 32.0
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 7.1e-22 109.0 300 38.3
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 2.7e-21 107.1 290 36.6
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 3.5e-21 106.7 290 36.9
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 4.6e-21 106.3 377 31.8
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 6.0e-21 105.9 372 33.3
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 7.9e-21 105.5 335 34.9
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 1.0e-20 105.1 290 37.9
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 1.8e-20 104.4 370 32.4
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 5.1e-20 102.8 316 36.4
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 5.1e-20 102.8 360 33.1
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.1e-19 101.7 305 35.1
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 1.3e-18 98.2 291 36.4
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.3e-18 98.2 331 36.0
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 1.6e-18 97.8 369 32.0
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 4.8e-18 96.3 377 29.4
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 8.2e-18 95.5 175 44.6
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.1e-17 95.1 297 35.4
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 9.0e-17 92.0 300 34.7
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 2.0e-16 90.9 354 32.5
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.6e-16 90.5 313 34.8
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 2.6e-16 90.5 365 31.2
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 5.9e-16 89.4 303 34.7
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 1.0e-15 88.6 290 34.1
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 1.0e-15 88.6 290 34.1
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.3e-15 88.2 303 31.7
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 1.3e-15 88.2 379 29.3
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 2.9e-15 87.0 303 34.7
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 3.2e-14 83.6 283 35.0
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.6e-13 81.3 334 32.0
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.6e-13 81.3 379 30.3
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 2.1e-13 80.9 283 34.3
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 3.6e-13 80.1 332 31.3
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 6.1e-13 79.3 291 32.3
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 3.0e-12 77.0 171 42.7
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 3.0e-12 77.0 193 38.3
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 1.9e-11 74.3 374 29.7
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 8.2e-10 68.9 300 30.3
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.1e-09 68.6 356 30.3
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 6.9e-09 65.9 107 38.3
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 1.2e-08 65.1 278 32.0
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 2.6e-08 63.9 293 30.4
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 2.2e-07 60.8 190 34.2
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 3.2e-06 57.0 145 37.2


User provided reference genes

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