Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0016221 Lotus japonicus HOM05D018548 ORTHO05D020752 7.9e-74 280.4 148 100.0
Medtr4g094472 Medicago truncatula HOM05D018548 ORTHO05D020752 4.9e-31 138.3 149 57.7
TPR.G23812 Trifolium pratense HOM05D018548 ORTHO05D020752 1.2e-29 133.7 148 56.8
Psat7g092800 Pisum sativum HOM05D018548 ORTHO05D020752 2.8e-26 122.5 146 51.4
Phvul.002G200900 Phaseolus vulgaris HOM05D018548 ORTHO05D020752 6.2e-26 121.3 148 50.0
Glyma.08G079700 Glycine max HOM05D018548 ORTHO05D020752 6.8e-25 117.9 148 48.6
VMungo0251G0064 Vigna mungo HOM05D018548 ORTHO05D020752 8.1e-18 94.4 153 43.8
Lalb_Chr11g0061921 Lupinus albus HOM05D005726 ORTHO05D001733 1.7e-15 86.7 123 49.6
RcHm_v2.0_Chr6g0302871 Rosa chinensis HOM05D005726 ORTHO05D001733 2.7e-13 79.3 132 39.4
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 2.3e-12 76.3 120 37.5
MD08G1013100 Malus domestica HOM05D005726 ORTHO05D001733 3.0e-12 75.9 132 41.7
Sed0021833 Sechium edule HOM05D005726 ORTHO05D001733 3.0e-12 75.9 132 42.4
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 3.9e-12 75.5 127 44.1
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 5.1e-12 75.1 120 36.7
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 8.6e-12 74.3 129 40.3
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 1.1e-11 73.9 116 41.4
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 1.9e-11 73.2 116 44.0
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 2.5e-11 72.8 120 36.7
Lj1g0006182 Lotus japonicus HOM05D005726 ORTHO05D001733 4.3e-11 72.0 109 44.0
Phvul.009G017000 Phaseolus vulgaris HOM05D005726 ORTHO05D001733 5.6e-11 71.6 129 42.6
VMungo1309G2498 Vigna mungo HOM05D005726 ORTHO05D001733 7.3e-11 71.2 116 41.4
Gorai.010G004200 Gossypium raimondii HOM05D005726 ORTHO05D001733 1.6e-10 70.1 118 40.7
Gohir.A06G004000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 3.6e-10 68.9 118 39.8
Gohir.D06G006900 Gossypium hirsutum HOM05D005726 ORTHO05D001733 3.6e-10 68.9 118 39.8
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 4.7e-10 68.6 118 39.8
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 8.1e-10 67.8 121 39.7
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 8.1e-10 67.8 121 38.8
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.1e-09 67.4 122 39.3
TPR.G34542 Trifolium pratense HOM05D005726 ORTHO05D001733 1.4e-09 67.0 106 44.3
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.8e-09 66.6 120 37.5
AL8G19720 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 3.1e-09 65.9 128 34.4
CANSAT01G1229 Cannabis sativa HOM05D005726 ORTHO05D001733 3.1e-09 65.9 120 36.7
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 3.1e-09 65.9 118 37.3
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 3.1e-09 65.9 116 38.8
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 5.2e-09 65.1 120 36.7
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 5.2e-09 65.1 130 40.0
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 5.2e-09 65.1 116 37.1
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 6.8e-09 64.7 120 35.0
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 8.9e-09 64.3 131 38.2
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 8.9e-09 64.3 132 38.6
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.2e-08 63.9 117 40.2
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 1.2e-08 63.9 118 36.4
AL8G19700 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 1.5e-08 63.5 128 33.6
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 1.5e-08 63.5 120 35.8
AT5G42146 Arabidopsis thaliana HOM05D005726 ORTHO05D001733 2.0e-08 63.2 128 33.6
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 2.0e-08 63.2 118 36.4
Sed0019554 Sechium edule HOM05D005726 ORTHO05D001733 2.0e-08 63.2 113 37.2
Atru.chr13.290 Acer truncatum HOM05D005726 ORTHO05D001733 3.4e-08 62.4 114 35.1
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 3.4e-08 62.4 114 35.1
Medtr3g113930 Medicago truncatula HOM05D005726 ORTHO05D001733 3.4e-08 62.4 106 41.5
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 3.4e-08 62.4 118 34.7
FAN04G1699 Fragaria x ananassa HOM05D005726 ORTHO05D001733 4.4e-08 62.0 111 37.8
Oeu037538.1 Olea europaea HOM05D005726 ORTHO05D001733 5.8e-08 61.6 119 32.8
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 5.8e-08 61.6 125 35.2
CiPaw.05G077000 Carya illinoinensis HOM05D005726 ORTHO05D001733 7.6e-08 61.2 120 37.5
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 7.6e-08 61.2 116 39.7
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.3e-07 60.5 118 38.1
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 1.3e-07 60.5 118 38.1
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 1.7e-07 60.1 114 34.2
MBI05_g46327_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 1.7e-07 60.1 113 36.3
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 2.2e-07 59.7 114 34.2
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 2.2e-07 59.7 114 34.2
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 2.2e-07 59.7 117 35.0
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 2.9e-07 59.3 115 38.3
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 2.9e-07 59.3 132 35.6
ClCG02G011420 Citrullus lanatus HOM05D005726 ORTHO05D001733 3.8e-07 58.9 116 33.6
Nitab4.5_0002561g0020 Nicotiana tabacum HOM05D005726 ORTHO05D001733 4.9e-07 58.5 136 30.9
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 4.9e-07 58.5 126 35.7
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 6.4e-07 58.2 118 37.3
Eucgr.F00586 Eucalyptus grandis HOM05D005726 ORTHO05D001733 8.4e-07 57.8 117 31.6
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 8.4e-07 57.8 120 35.0
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 1.1e-06 57.4 114 36.0
Sabra09G0098800 Salix brachista HOM05D005726 ORTHO05D001733 1.1e-06 57.4 65 47.7
Sopen04g035070 Solanum pennellii HOM05D005726 ORTHO05D001733 1.1e-06 57.4 137 31.4
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 1.4e-06 57.0 132 31.1
A09p10920 Brassica napus HOM05D005726 ORTHO05D001733 1.9e-06 56.6 114 31.6
BraA09t36732Z Brassica rapa HOM05D005726 ORTHO05D001733 1.9e-06 56.6 114 31.6
Oeu027542.1 Olea europaea HOM05D005726 ORTHO05D001733 1.9e-06 56.6 118 31.4
PGSC0003DMG400009937 Solanum tuberosum HOM05D005726 ORTHO05D001733 1.9e-06 56.6 137 30.7
Carub.0008s0720 Capsella rubella HOM05D005726 ORTHO05D001733 2.4e-06 56.2 128 32.0
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 4.2e-06 55.5 134 33.6
Actinidia00594 Actinidia chinensis HOM05D005726 ORTHO05D001733 7.1e-06 54.7 119 35.3
Ah.11g039720 Amaranthus hybridus HOM05D005726 ORTHO05D001733 7.1e-06 54.7 127 32.3
CARHR284740 Cardamine hirsuta HOM05D005726 ORTHO05D001733 7.1e-06 54.7 132 33.3
CsaV3_2G029540 Cucumis sativus L. HOM05D005726 ORTHO05D001733 7.1e-06 54.7 132 34.1


User provided reference genes

Program Settings