Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0016203 Lotus japonicus HOM05D006107 ORTHO05D007455 0.0e+00 1114.8 557 100.0
Medtr4g085890 Medicago truncatula HOM05D006107 ORTHO05D007455 2.8e-297 1024.6 557 91.2
Psat7g125400 Pisum sativum HOM05D006107 ORTHO05D007455 2.0e-295 1018.5 557 89.9
Glyma.07G213500 Glycine max HOM05D006107 ORTHO05D007455 1.9e-290 1001.9 559 89.6
arahy.Tifrunner.gnm1.ann1.Q9TTL4 Arachis hypogaea HOM05D006107 ORTHO05D007455 2.1e-289 998.4 567 87.7
Glyma.02G131500 Glycine max HOM05D006107 ORTHO05D007455 2.8e-289 998.0 559 89.4
TPR.G12695 Trifolium pratense HOM05D006107 ORTHO05D007455 4.8e-289 997.3 558 88.4
Phvul.003G291600 Phaseolus vulgaris HOM05D006107 ORTHO05D007455 6.2e-289 996.9 561 89.7
VMungo0251G2128 Vigna mungo HOM05D006107 ORTHO05D007455 3.1e-288 994.6 560 89.5
Lalb_Chr16g0384781 Lupinus albus HOM05D006107 ORTHO05D007455 5.5e-285 983.8 570 86.3
Ca_18695_v3 Cicer arietinum L. HOM05D006107 ORTHO05D007455 7.1e-285 983.4 521 92.5
arahy.Tifrunner.gnm1.ann1.H5D5IL Arachis hypogaea HOM05D006107 ORTHO05D007455 3.7e-281 971.1 593 83.0
QL11p035424 Quercus lobata HOM05D006107 ORTHO05D007455 8.2e-281 969.9 571 84.8
TWI31G1484 Tripterygium wilfordii HOM05D006107 ORTHO05D007455 1.2e-279 966.1 561 85.6
CsaV3_7G008530 Cucumis sativus L. HOM05D006107 ORTHO05D007455 1.2e-276 956.1 549 85.4
Potri.009G100800 Populus trichocarpa HOM05D006107 ORTHO05D007455 1.2e-276 956.1 574 82.8
GSVIVG01031728001 Vitis vinifera HOM05D006107 ORTHO05D007455 1.8e-275 952.2 571 83.5
Prupe.8G126800 Prunus persica HOM05D006107 ORTHO05D007455 2.3e-275 951.8 576 83.5
Atru.chr5.2684 Acer truncatum HOM05D006107 ORTHO05D007455 3.9e-275 951.0 553 85.0
CSS0002619 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 5.1e-275 950.7 547 85.2
Sed0010263 Sechium edule HOM05D006107 ORTHO05D007455 8.8e-275 949.9 549 85.4
RcHm_v2.0_Chr6g0257681 Rosa chinensis HOM05D006107 ORTHO05D007455 1.5e-274 949.1 561 84.3
CSS0005791 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 2.0e-274 948.7 547 85.0
Sabra09G0076700 Salix brachista HOM05D006107 ORTHO05D007455 2.0e-274 948.7 558 83.9
FAN15G1599 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.3e-273 946.0 561 84.3
FAN20G2345 Fragaria x ananassa HOM05D006107 ORTHO05D007455 2.2e-273 945.3 561 84.1
Thecc.02G102000 Theobroma cacao HOM05D006107 ORTHO05D007455 2.8e-273 944.9 544 84.6
Lj5A210T89 Lonicera japonica HOM05D006107 ORTHO05D007455 6.3e-273 943.7 580 79.8
FvH4_2g05870 Fragaria vesca HOM05D006107 ORTHO05D007455 1.4e-272 942.6 561 84.0
Hma1.2p1_0474F.1_g160480 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 1.4e-272 942.6 546 84.1
Rhsim05G0085900 Rhododendron simsii HOM05D006107 ORTHO05D007455 1.8e-272 942.2 547 84.5
Gohir.A12G023600 Gossypium hirsutum HOM05D006107 ORTHO05D007455 3.1e-272 941.4 544 84.6
ClCG02G006000 Citrullus lanatus HOM05D006107 ORTHO05D007455 9.1e-272 939.9 582 80.9
Eucgr.G01434 Eucalyptus grandis HOM05D006107 ORTHO05D007455 9.1e-272 939.9 572 82.5
MD05G1082300 Malus domestica HOM05D006107 ORTHO05D007455 1.5e-271 939.1 546 84.6
PGR042G0079 Punica granatum HOM05D006107 ORTHO05D007455 2.0e-271 938.7 556 83.5
Gorai.008G024600 Gossypium raimondii HOM05D006107 ORTHO05D007455 2.6e-271 938.3 544 84.4
Duzib132G0557 Durio zibethinus HOM05D006107 ORTHO05D007455 3.4e-271 937.9 544 84.2
FAN24G1318 Fragaria x ananassa HOM05D006107 ORTHO05D007455 3.4e-271 937.9 561 83.6
Gohir.D12G024200 Gossypium hirsutum HOM05D006107 ORTHO05D007455 4.5e-271 937.6 544 84.2
Cfa004529 Carpinus fangiana HOM05D006107 ORTHO05D007455 5.9e-271 937.2 508 90.7
Ciclev10028103m.g Citrus clementina HOM05D006107 ORTHO05D007455 5.9e-271 937.2 567 81.5
THA.LOC104807265 Tarenaya hassleriana HOM05D006107 ORTHO05D007455 3.2e-269 931.4 584 78.1
Haze_10087 Corylus avellana HOM05D006107 ORTHO05D007455 1.0e-267 926.4 571 81.6
Cc02_g18880 Coffea canephora HOM05D006107 ORTHO05D007455 9.7e-266 919.8 521 85.4
RcHm_v2.0_Chr6g0257701 Rosa chinensis HOM05D006107 ORTHO05D007455 2.8e-265 918.3 561 80.9
AT4G34030 Arabidopsis thaliana HOM05D006107 ORTHO05D007455 1.8e-264 915.6 547 80.1
BraA08t33679Z Brassica rapa HOM05D006107 ORTHO05D007455 2.4e-264 915.2 547 80.3
BcaB03g11861 Brassica carinata HOM05D006107 ORTHO05D007455 3.1e-264 914.8 582 77.1
Thhalv10024753m.g Eutrema salsugineum HOM05D006107 ORTHO05D007455 5.3e-264 914.1 588 75.3
MBI03_g13479_MAGBIO Magnolia biondii HOM05D006107 ORTHO05D007455 5.3e-264 914.1 553 80.1
Peaxi162Scf00016g01935 Petunia axillaris HOM05D006107 ORTHO05D007455 7.0e-264 913.7 551 81.9
A08p17180 Brassica napus HOM05D006107 ORTHO05D007455 9.1e-264 913.3 547 80.1
Hund06173 Selenicereus undatus HOM05D006107 ORTHO05D007455 9.1e-264 913.3 554 81.6
SGA_v2.0_scaffold90G27632 Striga asiatica HOM05D006107 ORTHO05D007455 9.1e-264 913.3 571 79.3
C03p86150 Brassica napus HOM05D006107 ORTHO05D007455 1.2e-263 912.9 547 80.1
AL7G17360 Arabidopsis lyrata HOM05D006107 ORTHO05D007455 2.0e-263 912.1 547 79.7
BcaC01g00937 Brassica carinata HOM05D006107 ORTHO05D007455 2.0e-263 912.1 547 80.3
CANSAT25G2960 Cannabis sativa HOM05D006107 ORTHO05D007455 3.5e-263 911.4 575 78.4
TAR376G0662 Trochodendron aralioides HOM05D006107 ORTHO05D007455 4.5e-263 911.0 570 79.1
Sc18g0004170 Simmondsia chinensis HOM05D006107 ORTHO05D007455 7.7e-263 910.2 573 78.4
BolC3t20903H Brassica oleracea HOM05D006107 ORTHO05D007455 1.0e-262 909.8 547 80.1
Carub.0007s0637 Capsella rubella HOM05D006107 ORTHO05D007455 1.3e-262 909.4 547 78.6
Sp7g31760 Schrenkiella parvula HOM05D006107 ORTHO05D007455 1.7e-262 909.1 547 79.3
Aa31LG2G16450 Aethionema arabicum HOM05D006107 ORTHO05D007455 5.0e-262 907.5 547 79.2
vmacro19505 Vaccinium macrocarpon HOM05D006107 ORTHO05D007455 1.2e-260 902.9 667 70.3
Migut.B00356 Erythranthe guttata HOM05D006107 ORTHO05D007455 1.6e-260 902.5 546 81.3
EL10Ac1g02230 Beta vulgaris HOM05D006107 ORTHO05D007455 8.0e-260 900.2 554 80.1
Aqoxy6G01306 Aquilegia oxysepala HOM05D006107 ORTHO05D007455 1.8e-259 899.0 557 77.9
A03p62570 Brassica napus HOM05D006107 ORTHO05D007455 2.3e-259 898.7 587 75.1
C07p60130 Brassica napus HOM05D006107 ORTHO05D007455 4.4e-258 894.4 547 78.8
BolC7t46453H Brassica oleracea HOM05D006107 ORTHO05D007455 4.4e-258 894.4 547 78.8
DCAR_001629 Daucus carota HOM05D006107 ORTHO05D007455 7.4e-258 893.6 521 83.5
SalBow6G1673 Salvia bowleyana HOM05D006107 ORTHO05D007455 1.3e-257 892.9 547 80.4
PSO675G2583 Papaver somniferum HOM05D006107 ORTHO05D007455 4.8e-257 891.0 522 82.4
PSO541G4551 Papaver somniferum HOM05D006107 ORTHO05D007455 1.4e-256 889.4 522 82.2
CAN.G1041.37 Capsicum annuum HOM05D006107 ORTHO05D007455 2.0e-255 885.6 521 82.5
COL.COLO4_32644 Corchorus olitorius HOM05D006107 ORTHO05D007455 2.6e-255 885.2 546 80.0
Sopen01g050230 Solanum pennellii HOM05D006107 ORTHO05D007455 4.5e-255 884.4 521 82.0
Nitab4.5_0018866g0010 Nicotiana tabacum HOM05D006107 ORTHO05D007455 5.9e-255 884.0 564 78.0
Solyc01g108030.4 Solanum lycopersicum HOM05D006107 ORTHO05D007455 7.7e-255 883.6 521 82.0
PGSC0003DMG400025888 Solanum tuberosum HOM05D006107 ORTHO05D007455 1.0e-254 883.2 521 81.8
ECA236G2832 Erigeron canadensis HOM05D006107 ORTHO05D007455 1.7e-254 882.5 520 81.3
HanXRQChr11g0331361 Helianthus annuus HOM05D006107 ORTHO05D007455 1.7e-254 882.5 524 80.2
AUR62035403 Chenopodium quinoa HOM05D006107 ORTHO05D007455 8.5e-254 880.2 601 73.5
Lsat_1_v5_gn_7_86820 Lactuca sativa HOM05D006107 ORTHO05D007455 1.9e-253 879.0 516 82.0
HPP92_004071 Vanilla planifolia HOM05D006107 ORTHO05D007455 4.2e-253 877.9 544 78.9
ATR1126G046 Amborella trichopoda HOM05D006107 ORTHO05D007455 5.7e-250 867.5 524 81.1
Dinv42164 Davidia involucrata HOM05D006107 ORTHO05D007455 1.3e-249 866.3 555 78.0
Zm00001eb179170 Zea mays HOM05D006107 ORTHO05D007455 2.8e-249 865.1 522 79.9
BcaNung03357 Brassica carinata HOM05D006107 ORTHO05D007455 3.2e-245 851.7 547 76.2
Nitab4.5_0001428g0130 Nicotiana tabacum HOM05D006107 ORTHO05D007455 2.1e-244 849.0 552 76.4
CDE10G1185 Ceratophyllum demersum HOM05D006107 ORTHO05D007455 1.4e-243 846.3 524 79.6
FAN27G3033 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.4e-240 836.3 521 80.8
Oeu007292.2 Olea europaea HOM05D006107 ORTHO05D007455 2.9e-238 828.6 469 85.3
Nn5g30280 Nelumbo nucifera HOM05D006107 ORTHO05D007455 2.5e-237 825.5 468 85.7
unitig_21.g20740 Utricularia gibba HOM05D006107 ORTHO05D007455 5.5e-237 824.3 521 78.5
Pp3c3_22750 Physcomitrium patens HOM05D006107 ORTHO05D007455 1.2e-236 823.2 522 76.2
CARHR242170 Cardamine hirsuta HOM05D006107 ORTHO05D007455 2.1e-236 822.4 468 83.1
CiPaw.05G007100 Carya illinoinensis HOM05D006107 ORTHO05D007455 2.1e-236 822.4 439 91.8
MELO3C018456.2 Cucumis melo HOM05D006107 ORTHO05D007455 4.9e-233 811.2 480 83.3
Mapoly0009s0150 Marchantia polymorpha HOM05D006107 ORTHO05D007455 1.4e-232 809.7 524 75.2
Cpa.g.sc62.2 Carica papaya HOM05D006107 ORTHO05D007455 1.2e-231 806.6 486 82.1
Manes.07G078100 Manihot esculenta HOM05D006107 ORTHO05D007455 2.9e-230 802.0 443 89.4
AagrBONN_evm.TU.Sc2ySwM_368.3420 Anthoceros agrestis HOM05D006107 ORTHO05D007455 3.4e-226 788.5 562 68.7
SEGI_09747 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 3.6e-220 768.5 466 80.3
HPP92_004116 Vanilla planifolia HOM05D006107 ORTHO05D007455 6.6e-214 747.7 544 69.9
SMO174G0062 Selaginella moellendorffii HOM05D006107 ORTHO05D007455 4.2e-200 701.8 522 66.7
Cre03.g181200 Chlamydomonas reinhardtii HOM05D006107 ORTHO05D007455 6.6e-198 694.5 557 61.4
AUR62041887 Chenopodium quinoa HOM05D006107 ORTHO05D007455 3.2e-192 675.6 464 72.8
Actinidia17868 Actinidia chinensis HOM05D006107 ORTHO05D007455 1.2e-178 630.6 397 79.3
Haze_26655 Corylus avellana HOM05D006107 ORTHO05D007455 1.1e-176 624.0 568 56.2
PRCOL_00006414 Prasinoderma coloniale HOM05D006107 ORTHO05D007455 3.4e-170 602.4 527 58.3
Haze_27116 Corylus avellana HOM05D006107 ORTHO05D007455 5.9e-154 548.5 437 61.3
Haze_27030 Corylus avellana HOM05D006107 ORTHO05D007455 7.9e-151 538.1 512 53.3
Ah.00g000150 Amaranthus hybridus HOM05D006107 ORTHO05D007455 3.6e-143 512.7 332 77.4
Hma1.2p1_0474F.1_g160470 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 1.7e-121 440.7 259 82.2
Haze_26656 Corylus avellana HOM05D006107 ORTHO05D007455 6.0e-90 335.9 254 64.2
QL11p035444 Quercus lobata HOM05D006107 ORTHO05D007455 1.6e-79 301.2 158 89.9
CBR_g54985 Chara braunii HOM05D006107 ORTHO05D007455 2.4e-54 217.6 504 29.6
Medtr3g011860 Medicago truncatula HOM05D006107 ORTHO05D007455 7.4e-48 196.1 208 52.4
QL11p035447 Quercus lobata HOM05D006107 ORTHO05D007455 7.2e-35 152.9 107 75.7
Cfa025742 Carpinus fangiana HOM05D006107 ORTHO05D007455 1.1e-30 139.0 443 25.7
QL11p035449 Quercus lobata HOM05D006107 ORTHO05D007455 4.1e-22 110.5 66 80.3
CARHR242160 Cardamine hirsuta HOM05D006107 ORTHO05D007455 2.5e-19 101.3 81 63.0
SEGI_09117 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 1.6e-13 82.0 55 74.5
Solyc01g108060.2 Solanum lycopersicum HOM05D006107 ORTHO05D007455 1.3e-07 62.4 30 90.0
CDE05G3043 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 3.7e-07 60.8 375 23.2
Cfa022865 Carpinus fangiana HOM05D003397 ORTHO05D004390 5.4e-06 57.0 304 25.7


User provided reference genes

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