Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 8.2e-55 216.9 112 100.0
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 2.6e-29 132.1 107 64.5
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.4e-27 126.3 107 58.9
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 9.4e-27 123.6 111 57.7
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 9.4e-27 123.6 113 59.3
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 1.6e-26 122.9 104 58.7
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 2.7e-26 122.1 107 60.7
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 6.1e-26 120.9 111 53.2
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 8.0e-26 120.6 102 55.9
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.0e-25 120.2 101 58.4
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 1.4e-25 119.8 107 57.0
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.8e-25 119.4 101 58.4
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.8e-25 119.4 101 58.4
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 3.0e-25 118.6 100 58.0
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.0e-25 118.6 92 60.9
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 3.0e-25 118.6 106 56.6
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 3.9e-25 118.2 105 56.2
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 3.9e-25 118.2 101 55.4
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.2e-25 117.9 111 53.2
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 6.7e-25 117.5 109 55.0
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 6.7e-25 117.5 100 57.0
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 6.7e-25 117.5 100 57.0
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 8.8e-25 117.1 104 56.7
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 8.8e-25 117.1 104 56.7
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 8.8e-25 117.1 109 54.1
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 8.8e-25 117.1 111 52.3
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 1.1e-24 116.7 94 59.6
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.1e-24 116.7 106 53.8
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.1e-24 116.7 106 53.8
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 1.1e-24 116.7 111 52.3
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.1e-24 116.7 104 56.7
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.5e-24 116.3 106 53.8
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 2.0e-24 115.9 105 55.2
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 2.0e-24 115.9 100 57.0
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 2.0e-24 115.9 110 52.7
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 2.0e-24 115.9 109 54.1
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 2.0e-24 115.9 104 56.7
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 2.0e-24 115.9 104 55.8
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 2.6e-24 115.5 104 56.7
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 2.6e-24 115.5 94 58.5
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 2.6e-24 115.5 111 55.0
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.6e-24 115.5 104 56.7
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.6e-24 115.5 104 56.7
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.6e-24 115.5 104 56.7
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 2.6e-24 115.5 104 55.8
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 3.3e-24 115.2 105 61.0
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 3.3e-24 115.2 98 60.2
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 3.3e-24 115.2 98 60.2
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 3.3e-24 115.2 100 57.0
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 4.4e-24 114.8 94 58.5
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 4.4e-24 114.8 94 59.6
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 4.4e-24 114.8 101 56.4
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.4e-24 114.8 110 52.7
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.4e-24 114.8 110 52.7
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 5.7e-24 114.4 104 54.8
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 5.7e-24 114.4 91 59.3
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 7.4e-24 114.0 111 52.3
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 7.4e-24 114.0 111 52.3
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 7.4e-24 114.0 92 59.8
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 7.4e-24 114.0 99 56.6
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 7.4e-24 114.0 104 53.8
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 9.7e-24 113.6 107 54.2
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 9.7e-24 113.6 101 53.5
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 9.7e-24 113.6 115 53.0
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 1.3e-23 113.2 111 53.2
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.3e-23 113.2 110 51.8
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 1.7e-23 112.8 104 54.8
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 1.7e-23 112.8 99 55.6
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 2.2e-23 112.5 109 55.0
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 2.2e-23 112.5 103 54.4
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 2.8e-23 112.1 94 57.4
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 2.8e-23 112.1 104 54.8
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 2.8e-23 112.1 99 56.6
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 2.8e-23 112.1 106 53.8
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.7e-23 111.7 94 58.5
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 3.7e-23 111.7 99 54.5
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 3.7e-23 111.7 110 51.8
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 3.7e-23 111.7 110 51.8
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 3.7e-23 111.7 110 50.9
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 4.8e-23 111.3 94 56.4
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 4.8e-23 111.3 102 55.9
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 4.8e-23 111.3 92 56.5
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 6.3e-23 110.9 93 57.0
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 6.3e-23 110.9 108 52.8
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 8.2e-23 110.5 110 50.9
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 8.2e-23 110.5 111 50.5
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 8.2e-23 110.5 94 58.5
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 1.8e-22 109.4 110 50.0
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 1.8e-22 109.4 110 50.0
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.8e-22 109.4 111 50.5
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 2.4e-22 109.0 110 51.8
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.4e-22 109.0 111 53.2
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 3.1e-22 108.6 105 52.4
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 3.1e-22 108.6 91 57.1
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.1e-22 108.6 92 54.3
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 4.1e-22 108.2 100 53.0
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 4.1e-22 108.2 111 50.5
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 4.1e-22 108.2 94 55.3
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 4.1e-22 108.2 88 61.4
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.3e-22 107.8 108 50.0
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.3e-22 107.8 108 50.0
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.3e-22 107.8 108 50.0
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 7.0e-22 107.5 110 50.0
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 7.0e-22 107.5 110 50.9
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 9.1e-22 107.1 110 50.9
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 9.1e-22 107.1 110 50.9
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 9.1e-22 107.1 110 50.9
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 9.1e-22 107.1 111 49.5
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 9.1e-22 107.1 110 50.9
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 1.2e-21 106.7 111 50.5
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 2.0e-21 105.9 110 50.0
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 2.0e-21 105.9 110 50.0
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 2.0e-21 105.9 110 50.0
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 2.0e-21 105.9 110 50.0
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 2.0e-21 105.9 110 50.0
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 2.0e-21 105.9 110 50.0
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.0e-21 105.9 108 49.1
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 2.0e-21 105.9 94 55.3
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 2.6e-21 105.5 110 50.0
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 2.6e-21 105.5 110 50.0
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 2.6e-21 105.5 110 50.0
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 4.5e-21 104.8 110 50.0
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 4.5e-21 104.8 110 49.1
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 1.0e-20 103.6 94 54.3
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 1.3e-20 103.2 78 61.5
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 6.5e-20 100.9 98 51.0
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 3.2e-19 98.6 93 57.0
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 7.2e-19 97.4 101 50.5
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 7.2e-19 97.4 101 50.5
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 9.4e-19 97.1 91 54.9
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 9.4e-19 97.1 108 45.4
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 1.2e-18 96.7 75 60.0
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 2.1e-18 95.9 101 49.5
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 4.7e-18 94.7 104 48.1
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 4.7e-18 94.7 108 45.4
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 6.1e-18 94.4 79 57.0
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 9.7e-16 87.0 72 59.7
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.2e-15 85.9 77 55.8
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.8e-15 85.5 77 53.2
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 2.8e-15 85.5 95 47.4
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 4.8e-15 84.7 86 50.0
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 8.2e-15 84.0 78 52.6
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 3.1e-14 82.0 61 62.3
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 3.8e-12 75.1 83 50.6
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.1e-11 73.6 68 57.4
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 8.0e-10 67.4 59 50.8
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 4.4e-08 61.6 73 47.9
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 3.7e-07 58.5 105 36.2
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 4.8e-07 58.2 60 40.0
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.4e-06 56.6 56 50.0
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.8e-06 56.2 92 34.8
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 7.0e-06 54.3 59 45.8


User provided reference genes

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