Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0015648 Lotus japonicus HOM05D005660 ORTHO05D006954 5.0e-120 434.5 223 100.0
Lalb_Chr07g0178541 Lupinus albus HOM05D005660 ORTHO05D006954 1.3e-80 303.5 199 78.9
Glyma.05G014100 Glycine max HOM05D005660 ORTHO05D006954 2.2e-80 302.8 199 78.9
Glyma.17G122400 Glycine max HOM05D005660 ORTHO05D006954 5.5e-79 298.1 199 77.9
arahy.Tifrunner.gnm1.ann1.IPQJ9D Arachis hypogaea HOM05D005660 ORTHO05D006954 3.1e-74 282.3 204 71.6
Phvul.003G178300 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 7.0e-74 281.2 216 70.4
arahy.Tifrunner.gnm1.ann1.YK8N2P Arachis hypogaea HOM05D005660 ORTHO05D006954 1.6e-70 270.0 204 69.6
Glyma.06G209600 Glycine max HOM05D005660 ORTHO05D006954 8.9e-69 264.2 202 69.8
VMungo1309G1625 Vigna mungo HOM05D005660 ORTHO05D006954 2.2e-67 259.6 200 67.5
QL10p023157 Quercus lobata HOM05D005660 ORTHO05D006954 2.0e-65 253.1 202 65.8
Lj1g0000047 Lotus japonicus HOM05D005660 ORTHO05D006954 7.8e-65 251.1 202 67.3
Glyma.04G145600 Glycine max HOM05D005660 ORTHO05D006954 3.0e-64 249.2 200 66.0
VMungo1215G2351 Vigna mungo HOM05D005660 ORTHO05D006954 2.5e-63 246.1 284 53.5
Atru.chr9.733 Acer truncatum HOM05D005660 ORTHO05D006954 4.3e-63 245.4 201 63.7
Cc04_g07620 Coffea canephora HOM05D005660 ORTHO05D006954 5.6e-63 245.0 199 61.3
FvH4_5g12810 Fragaria vesca HOM05D005660 ORTHO05D006954 1.2e-62 243.8 206 63.1
Dinv36893 Davidia involucrata HOM05D005660 ORTHO05D006954 4.7e-62 241.9 199 61.8
FAN08G1036 Fragaria x ananassa HOM05D005660 ORTHO05D006954 4.7e-62 241.9 206 62.6
FAN18G2100 Fragaria x ananassa HOM05D005660 ORTHO05D006954 6.2e-62 241.5 206 62.6
CiPaw.16G083200 Carya illinoinensis HOM05D005660 ORTHO05D006954 1.8e-61 240.0 206 62.6
COL.COLO4_38430 Corchorus olitorius HOM05D005660 ORTHO05D006954 1.8e-61 240.0 201 60.7
Sed0025711 Sechium edule HOM05D005660 ORTHO05D006954 3.1e-61 239.2 203 60.1
FAN18G0270 Fragaria x ananassa HOM05D005660 ORTHO05D006954 5.2e-61 238.4 206 62.1
RcHm_v2.0_Chr7g0184421 Rosa chinensis HOM05D005660 ORTHO05D006954 6.8e-61 238.0 207 61.8
Peaxi162Scf00015g00624 Petunia axillaris HOM05D005660 ORTHO05D006954 1.5e-60 236.9 199 60.3
CSS0007003 Camellia sinensis var. sinensis HOM05D005660 ORTHO05D006954 2.6e-60 236.1 201 61.2
Thecc.03G027100 Theobroma cacao HOM05D005660 ORTHO05D006954 2.6e-60 236.1 204 62.3
arahy.Tifrunner.gnm1.ann1.18T8HP Arachis hypogaea HOM05D005660 ORTHO05D006954 5.8e-60 235.0 205 62.9
Ciclev10022237m.g Citrus clementina HOM05D005660 ORTHO05D006954 5.8e-60 235.0 202 58.9
CANSAT80G1116 Cannabis sativa HOM05D005660 ORTHO05D006954 7.5e-60 234.6 207 59.4
Lj5C141T17 Lonicera japonica HOM05D005660 ORTHO05D006954 2.9e-59 232.6 199 57.3
Prupe.5G216100 Prunus persica HOM05D005660 ORTHO05D006954 2.9e-59 232.6 208 61.1
Potri.012G059100 Populus trichocarpa HOM05D005660 ORTHO05D006954 3.7e-59 232.3 206 61.7
Gohir.A12G265100 Gossypium hirsutum HOM05D005660 ORTHO05D006954 1.9e-58 229.9 204 59.3
Solyc03g119840.3 Solanum lycopersicum HOM05D005660 ORTHO05D006954 3.2e-58 229.2 205 56.1
CAN.G438.109 Capsicum annuum HOM05D005660 ORTHO05D006954 4.1e-58 228.8 208 57.2
MD06G1209900 Malus domestica HOM05D005660 ORTHO05D006954 7.0e-58 228.0 213 58.2
MD14G1220800 Malus domestica HOM05D005660 ORTHO05D006954 7.0e-58 228.0 213 57.3
Medtr2g055760 Medicago truncatula HOM05D005660 ORTHO05D006954 7.0e-58 228.0 211 61.1
Duzib068G0469 Durio zibethinus HOM05D005660 ORTHO05D006954 9.2e-58 227.6 206 59.7
Lsat_1_v5_gn_1_15860 Lactuca sativa HOM05D005660 ORTHO05D006954 1.2e-57 227.3 206 56.8
PGR083G1435 Punica granatum HOM05D005660 ORTHO05D006954 1.2e-57 227.3 212 57.1
Eucgr.B00688 Eucalyptus grandis HOM05D005660 ORTHO05D006954 1.6e-57 226.9 202 58.9
Gohir.D12G265300 Gossypium hirsutum HOM05D005660 ORTHO05D006954 2.7e-57 226.1 204 58.8
Oeu016162.1 Olea europaea HOM05D005660 ORTHO05D006954 3.5e-57 225.7 195 60.5
PGSC0003DMG400004073 Solanum tuberosum HOM05D005660 ORTHO05D006954 6.0e-57 224.9 199 58.8
TWI81G0064 Tripterygium wilfordii HOM05D005660 ORTHO05D006954 7.8e-57 224.6 203 57.1
ECA247G3454 Erigeron canadensis HOM05D005660 ORTHO05D006954 3.0e-56 222.6 208 57.2
Psat1g025680 Pisum sativum HOM05D005660 ORTHO05D006954 3.0e-56 222.6 203 62.1
MELO3C002072.2 Cucumis melo HOM05D005660 ORTHO05D006954 6.6e-56 221.5 205 56.1
CsaV3_1G006460 Cucumis sativus L. HOM05D005660 ORTHO05D006954 6.6e-56 221.5 204 55.9
HanXRQChr02g0042751 Helianthus annuus HOM05D005660 ORTHO05D006954 8.6e-56 221.1 207 55.1
Actinidia39803 Actinidia chinensis HOM05D005660 ORTHO05D006954 1.1e-55 220.7 201 58.2
Nitab4.5_0003716g0100 Nicotiana tabacum HOM05D005660 ORTHO05D006954 1.9e-55 219.9 199 56.8
Ca_02656_v3 Cicer arietinum L. HOM05D005660 ORTHO05D006954 3.6e-54 215.7 172 67.4
Cfa019836 Carpinus fangiana HOM05D005660 ORTHO05D006954 6.2e-54 214.9 168 65.5
Manes.05G117900 Manihot esculenta HOM05D005660 ORTHO05D006954 6.2e-54 214.9 201 57.2
Manes.01G021600 Manihot esculenta HOM05D005660 ORTHO05D006954 6.8e-53 211.5 203 55.7
Nitab4.5_0001432g0090 Nicotiana tabacum HOM05D005660 ORTHO05D006954 8.9e-53 211.1 208 52.9
Hund09993 Selenicereus undatus HOM05D005660 ORTHO05D006954 1.5e-52 210.3 214 54.2
Nitab4.5_0010134g0010 Nicotiana tabacum HOM05D005660 ORTHO05D006954 2.6e-52 209.5 198 53.5
Haze_18589 Corylus avellana HOM05D005660 ORTHO05D006954 4.4e-52 208.8 177 61.6
Gorai.008G285000 Gossypium raimondii HOM05D005660 ORTHO05D006954 4.4e-52 208.8 237 50.6
SalBow2G0395 Salvia bowleyana HOM05D005660 ORTHO05D006954 5.8e-52 208.4 196 56.1
Sopen06g026530 Solanum pennellii HOM05D005660 ORTHO05D006954 7.5e-52 208.0 197 57.9
Haze_18590 Corylus avellana HOM05D005660 ORTHO05D006954 9.8e-52 207.6 177 61.0
HanXRQChr04g0105941 Helianthus annuus HOM05D005660 ORTHO05D006954 1.7e-51 206.8 200 54.5
TPR.G27758 Trifolium pratense HOM05D005660 ORTHO05D006954 3.7e-51 205.7 176 65.3
Actinidia31034 Actinidia chinensis HOM05D005660 ORTHO05D009563 4.9e-51 205.3 166 62.7
Nn3g17686 Nelumbo nucifera HOM05D005660 ORTHO05D006954 1.4e-50 203.8 194 57.7
EL10Ac5g11240 Beta vulgaris HOM05D005660 ORTHO05D006954 1.9e-50 203.4 208 51.9
Cpa.g.c34045 Carica papaya HOM05D005660 ORTHO05D006954 2.4e-50 203.0 170 62.9
Migut.K00381 Erythranthe guttata HOM05D005660 ORTHO05D006954 1.6e-49 200.3 195 53.8
Oeu027136.1 Olea europaea HOM05D005660 ORTHO05D006954 2.7e-49 199.5 169 61.5
arahy.Tifrunner.gnm1.ann1.K4DBIV Arachis hypogaea HOM05D005660 ORTHO05D006954 3.5e-49 199.1 176 62.5
MSTRG.9561 Avicennia marina HOM05D005660 ORTHO05D006954 3.5e-49 199.1 192 55.2
Sed0025679 Sechium edule HOM05D005660 ORTHO05D006954 3.5e-49 199.1 207 52.2
CiPaw.15G125200 Carya illinoinensis HOM05D005660 ORTHO05D006954 1.3e-48 197.2 214 56.1
Aqoxy3G03878 Aquilegia oxysepala HOM05D005660 ORTHO05D006954 1.7e-48 196.8 200 52.0
Nitab4.5_0000410g0170 Nicotiana tabacum HOM05D005660 ORTHO05D006954 7.3e-47 191.4 170 57.6
TAR629G1816 Trochodendron aralioides HOM05D005660 ORTHO05D006954 1.6e-46 190.3 187 53.5
Sc12g0006810 Simmondsia chinensis HOM05D005660 ORTHO05D006954 8.1e-46 188.0 189 51.9
Carub.0001s3813 Capsella rubella HOM05D005660 ORTHO05D006954 1.1e-45 187.6 208 51.0
Ah.11g047200 Amaranthus hybridus HOM05D005660 ORTHO05D006954 4.0e-45 185.7 219 47.0
Peaxi162Scf00013g00938 Petunia axillaris HOM05D005660 ORTHO05D006954 4.0e-45 185.7 198 51.0
PSO063G2916 Papaver somniferum HOM05D005660 ORTHO05D006954 1.2e-44 184.1 206 48.5
AL1G55790 Arabidopsis lyrata HOM05D005660 ORTHO05D006954 2.6e-44 183.0 208 51.0
AT1G48960 Arabidopsis thaliana HOM05D005660 ORTHO05D006954 9.9e-44 181.0 208 50.5
vmacro17684 Vaccinium macrocarpon HOM05D005660 ORTHO05D006954 1.3e-43 180.6 157 55.4
TAR622G0544 Trochodendron aralioides HOM05D005660 ORTHO05D006954 1.7e-43 180.3 137 63.5
BolC6t35508H Brassica oleracea HOM05D005660 ORTHO05D006954 2.2e-43 179.9 221 48.0
BcaNung05017 Brassica carinata HOM05D005660 ORTHO05D006954 2.4e-42 176.4 209 48.3
C06p03690 Brassica napus HOM05D005660 ORTHO05D006954 2.4e-42 176.4 209 48.3
BcaC08g43100 Brassica carinata HOM05D005660 ORTHO05D006954 3.2e-42 176.0 209 48.3
Sp1g35870 Schrenkiella parvula HOM05D005660 ORTHO05D006954 3.2e-42 176.0 206 48.5
GSVIVG01008223001 Vitis vinifera HOM05D005660 ORTHO05D006954 3.2e-42 176.0 208 49.5
BraA06t23613Z Brassica rapa HOM05D005660 ORTHO05D006954 4.1e-42 175.6 207 48.3
BcaB04g17376 Brassica carinata HOM05D005660 ORTHO05D006954 5.4e-42 175.3 203 49.3
CARHR038970 Cardamine hirsuta HOM05D005660 ORTHO05D006954 1.6e-41 173.7 210 47.1
Lalb_Chr13g0302411 Lupinus albus HOM05D005660 ORTHO05D006954 1.6e-41 173.7 115 75.7
AUR62032180 Chenopodium quinoa HOM05D005660 ORTHO05D006954 2.1e-41 173.3 181 52.5
PSO782G0127 Papaver somniferum HOM05D005660 ORTHO05D006954 2.1e-41 173.3 206 46.6
A06p04080 Brassica napus HOM05D005660 ORTHO05D006954 7.8e-41 171.4 205 47.3
Thhalv10011768m.g Eutrema salsugineum HOM05D005660 ORTHO05D006954 1.3e-40 170.6 209 46.9
Aa31LG10G4970 Aethionema arabicum HOM05D005660 ORTHO05D006954 3.3e-39 166.0 202 46.0
BcaC07g37091 Brassica carinata HOM05D005660 ORTHO05D006954 3.3e-39 166.0 206 46.6
C08p04550 Brassica napus HOM05D005660 ORTHO05D006954 3.3e-39 166.0 206 46.6
BolC8t47259H Brassica oleracea HOM05D005660 ORTHO05D006954 3.3e-39 166.0 206 46.6
A08p04280 Brassica napus HOM05D005660 ORTHO05D006954 7.3e-39 164.9 207 47.8
DCAR_011337 Daucus carota HOM05D005660 ORTHO05D006954 8.1e-38 161.4 169 52.1
Duzib084G1344 Durio zibethinus HOM05D005660 ORTHO05D006954 1.4e-37 160.6 199 45.7
CAN.G587.76 Capsicum annuum HOM05D005660 ORTHO05D006954 2.0e-36 156.8 115 67.8
Rhsim08G0138400 Rhododendron simsii HOM05D005660 ORTHO05D006954 1.3e-35 154.1 123 59.3
BraA08t32455Z Brassica rapa HOM05D005660 ORTHO05D006954 6.4e-35 151.8 207 45.9
Sabra12G0040900 Salix brachista HOM05D005660 ORTHO05D006954 1.1e-34 151.0 117 66.7
THA.LOC104820410 Tarenaya hassleriana HOM05D005660 ORTHO05D006954 4.2e-34 149.1 234 40.6
Phvul.009G201000 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 2.1e-33 146.7 126 63.5
MBI16_g23748_MAGBIO Magnolia biondii HOM05D005660 ORTHO05D006954 6.0e-33 145.2 166 49.4
Cpa.g.sc13.65 Carica papaya HOM05D005660 ORTHO05D006954 1.0e-32 144.4 115 63.5
Nn4g23692 Nelumbo nucifera HOM05D005660 ORTHO05D006954 7.3e-31 138.3 194 43.8
AUR62036940 Chenopodium quinoa HOM05D005660 ORTHO05D006954 9.6e-31 137.9 119 58.8
ClCG04G011310 Citrullus lanatus HOM05D005660 ORTHO05D006954 1.6e-30 137.1 130 55.4
HPP92_011590 Vanilla planifolia HOM05D005660 ORTHO05D006954 2.6e-28 129.8 139 49.6
Lalb_Chr13g0302401 Lupinus albus HOM05D005660 ORTHO05D006954 8.4e-27 124.8 88 73.9
ATR0598G023 Amborella trichopoda HOM05D005660 ORTHO05D006954 3.5e-25 119.4 152 45.4
SEGI_40774 Sequoiadendron giganteum HOM05D005660 ORTHO05D006954 8.7e-24 114.8 150 44.7
Zm00001eb126330 Zea mays HOM05D005660 ORTHO05D006954 1.4e-21 107.5 116 52.6
Sopen03g038700 Solanum pennellii HOM05D005660 ORTHO05D006954 2.4e-21 106.7 106 52.8
AagrBONN_evm.TU.Sc2ySwM_362.1267 Anthoceros agrestis HOM05D005660 ORTHO05D006954 1.1e-18 97.8 174 36.8
FAN13G2173 Fragaria x ananassa HOM05D005660 ORTHO05D006954 2.1e-17 93.6 98 58.2
PGSC0003DMG400005618 Solanum tuberosum HOM05D005660 ORTHO05D006954 6.2e-14 82.0 77 55.8
CDE07G0562 Ceratophyllum demersum HOM05D005660 ORTHO05D006954 6.9e-13 78.6 130 36.2
Solyc06g069270.1 Solanum lycopersicum HOM05D005660 ORTHO05D006954 6.9e-13 78.6 57 64.9
Sabra12G0040800 Salix brachista HOM05D005660 ORTHO05D006954 7.6e-12 75.1 95 46.3
SMO145G0122 Selaginella moellendorffii HOM05D001012 ORTHO05D002597 5.7e-07 58.9 118 32.2
SEGI_13166 Sequoiadendron giganteum HOM05D001012 ORTHO05D002597 2.1e-06 57.0 127 29.1
Mapoly0056s0094 Marchantia polymorpha HOM05D001012 ORTHO05D004721 8.2e-06 55.1 153 27.5


User provided reference genes

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