Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0015473 Lotus japonicus HOM05D007727 ORTHO05D009078 9.9e-71 270.0 137 100.0
Lj4g0008549 Lotus japonicus HOM05D007727 ORTHO05D009078 4.5e-47 191.4 136 77.2
Glyma.08G022800 Glycine max HOM05D007727 ORTHO05D009078 3.2e-37 158.7 137 63.5
Glyma.05G216900 Glycine max HOM05D007727 ORTHO05D009078 3.3e-34 148.7 140 62.9
Glyma.08G023200 Glycine max HOM05D007727 ORTHO05D009078 6.3e-33 144.4 129 60.5
Lalb_Chr05g0224131 Lupinus albus HOM05D007727 ORTHO05D009078 5.3e-32 141.4 135 60.7
Glyma.05G217200 Glycine max HOM05D007727 ORTHO05D009078 1.4e-29 133.3 130 59.2
Glyma.11G017500 Glycine max HOM05D007727 ORTHO05D009078 1.2e-28 130.2 134 58.2
TPR.G11121 Trifolium pratense HOM05D007727 ORTHO05D009078 1.2e-28 130.2 137 54.7
Glyma.01G225500 Glycine max HOM05D007727 ORTHO05D009078 2.3e-27 125.9 132 57.6
Phvul.002G164400 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 2.3e-27 125.9 127 57.5
Phvul.002G298200 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 3.9e-27 125.2 139 51.1
Phvul.002G298600 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 8.8e-27 124.0 132 52.3
TPR.G3394 Trifolium pratense HOM05D007727 ORTHO05D009078 8.8e-27 124.0 134 56.7
Medtr8g099485 Medicago truncatula HOM05D007727 ORTHO05D009078 1.1e-24 117.1 129 49.6
TPR.G3425 Trifolium pratense HOM05D007727 ORTHO05D009078 9.1e-24 114.0 133 50.4
VMungo0251G2989 Vigna mungo HOM05D007727 ORTHO05D009078 3.8e-22 108.6 130 44.6
TPR.G3415 Trifolium pratense HOM05D007727 ORTHO05D009078 1.9e-21 106.3 127 51.2
VMungo1215G2373 Vigna mungo HOM05D007727 ORTHO05D009078 2.5e-21 105.9 132 51.5
Medtr8g099475 Medicago truncatula HOM05D007727 ORTHO05D009078 3.6e-20 102.1 118 50.8
LjContig00312_ERROPOS870357g0016151 Lotus japonicus HOM05D007727 ORTHO05D009078 5.2e-19 98.2 127 49.6
Hma1.2p1_1746F.1_g300420 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.2e-15 87.0 138 44.2
Dinv38830 Davidia involucrata HOM05D007727 ORTHO05D009078 5.0e-14 81.6 122 46.7
QL02p030384 Quercus lobata HOM05D007727 ORTHO05D009078 8.5e-14 80.9 111 45.0
CiPaw.12G082800 Carya illinoinensis HOM05D007727 ORTHO05D009078 2.5e-13 79.3 108 46.3
Haze_09065 Corylus avellana HOM05D007727 ORTHO05D009078 3.2e-13 79.0 127 42.5
Potri.001G091400 Populus trichocarpa HOM05D007727 ORTHO05D009078 5.5e-13 78.2 104 45.2
Potri.004G151000 Populus trichocarpa HOM05D007727 ORTHO05D009078 7.2e-13 77.8 107 47.7
Thecc.03G298300 Theobroma cacao HOM05D007727 ORTHO05D009078 9.4e-13 77.4 114 45.6
Cfa012003 Carpinus fangiana HOM05D007727 ORTHO05D009078 1.2e-12 77.0 128 41.4
Cfa012008 Carpinus fangiana HOM05D007727 ORTHO05D009078 1.2e-12 77.0 128 41.4
Hma1.2p1_1461F.1_g285070 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.1e-12 76.3 142 39.4
Manes.02G009800 Manihot esculenta HOM05D007727 ORTHO05D009078 2.7e-12 75.9 102 44.1
Potri.003G140200 Populus trichocarpa HOM05D007727 ORTHO05D009078 2.7e-12 75.9 107 48.6
Potri.003G140233 Populus trichocarpa HOM05D007727 ORTHO05D009078 2.7e-12 75.9 107 48.6
Potri.003G140266 Populus trichocarpa HOM05D007727 ORTHO05D009078 2.7e-12 75.9 107 48.6
Cfa012009 Carpinus fangiana HOM05D007727 ORTHO05D009078 3.6e-12 75.5 120 42.5
CSS0019090 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 4.7e-12 75.1 134 38.1
Rhsim02G0243900 Rhododendron simsii HOM05D007727 ORTHO05D009078 4.7e-12 75.1 135 41.5
QL02p030408 Quercus lobata HOM05D007727 ORTHO05D009078 6.1e-12 74.7 114 42.1
Sabra01G0067700 Salix brachista HOM05D007727 ORTHO05D009078 8.0e-12 74.3 107 43.0
Sabra01G0067800 Salix brachista HOM05D007727 ORTHO05D009078 8.0e-12 74.3 107 42.1
Haze_09064 Corylus avellana HOM05D007727 ORTHO05D009078 1.0e-11 73.9 115 41.7
Medtr5g009290 Medicago truncatula HOM05D007727 ORTHO05D009078 1.0e-11 73.9 146 41.8
Duzib205G0888 Durio zibethinus HOM05D007727 ORTHO05D009078 1.4e-11 73.6 134 38.1
Eucgr.D01744 Eucalyptus grandis HOM05D007727 ORTHO05D009078 2.3e-11 72.8 110 46.4
FAN18G0179 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.3e-11 72.8 127 41.7
Oeu031672.1 Olea europaea HOM05D007727 ORTHO05D009078 2.3e-11 72.8 122 44.3
FvH4_5g04620 Fragaria vesca HOM05D007727 ORTHO05D009078 3.0e-11 72.4 127 41.7
FAN18G4426 Fragaria x ananassa HOM05D007727 ORTHO05D009078 3.0e-11 72.4 127 41.7
Psat2g185360 Pisum sativum HOM05D007727 ORTHO05D009078 3.0e-11 72.4 143 42.0
CSS0050195 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 4.0e-11 72.0 109 44.0
CiPaw.12G082600 Carya illinoinensis HOM05D007727 ORTHO05D009078 4.0e-11 72.0 108 45.4
QL02p030389 Quercus lobata HOM05D007727 ORTHO05D009078 4.0e-11 72.0 113 41.6
QL02p030393 Quercus lobata HOM05D007727 ORTHO05D009078 8.8e-11 70.9 112 42.0
Rhsim02G0244000 Rhododendron simsii HOM05D007727 ORTHO05D009078 8.8e-11 70.9 135 37.8
FAN04G2059 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.2e-10 70.5 127 40.9
ClCG07G011610 Citrullus lanatus HOM05D007727 ORTHO05D009078 1.5e-10 70.1 102 44.1
TPR.G25603 Trifolium pratense HOM05D007727 ORTHO05D009078 1.5e-10 70.1 118 45.8
Rhsim02G0243800 Rhododendron simsii HOM05D007727 ORTHO05D009078 2.0e-10 69.7 98 48.0
CiPaw.11G121100 Carya illinoinensis HOM05D007727 ORTHO05D009078 2.6e-10 69.3 113 40.7
Rhsim02G0243700 Rhododendron simsii HOM05D007727 ORTHO05D009078 3.4e-10 68.9 133 39.8
CsaV3_4G006600 Cucumis sativus L. HOM05D007727 ORTHO05D009078 4.4e-10 68.6 131 38.2
MSTRG.25675 Avicennia marina HOM05D007727 ORTHO05D009078 5.7e-10 68.2 111 46.8
FAN13G2104 Fragaria x ananassa HOM05D007727 ORTHO05D009078 5.7e-10 68.2 128 40.6
FAN13G3265 Fragaria x ananassa HOM05D007727 ORTHO05D009078 5.7e-10 68.2 128 40.6
Gorai.003G078900 Gossypium raimondii HOM05D007727 ORTHO05D009078 7.5e-10 67.8 119 40.3
COL.COLO4_10705 Corchorus olitorius HOM05D007727 ORTHO05D009078 9.8e-10 67.4 118 40.7
Gorai.004G133300 Gossypium raimondii HOM05D007727 ORTHO05D009078 9.8e-10 67.4 104 44.2
Gohir.D03G083800 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.3e-09 67.0 94 45.7
Hma1.2p1_1461F.1_g285060 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.3e-09 67.0 56 60.7
Hma1.2p1_2808F.1_g328866 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.3e-09 67.0 56 60.7
Oeu031673.1 Olea europaea HOM05D007727 ORTHO05D009078 1.3e-09 67.0 108 45.4
Eucgr.D01742 Eucalyptus grandis HOM05D007727 ORTHO05D009078 2.8e-09 65.9 45 73.3
Eucgr.D01747 Eucalyptus grandis HOM05D007727 ORTHO05D009078 2.8e-09 65.9 127 40.9
FAN08G2749 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.8e-09 65.9 127 39.4
Gohir.D08G130400 Gossypium hirsutum HOM05D007727 ORTHO05D009078 3.7e-09 65.5 104 43.3
Prupe.5G120300 Prunus persica HOM05D007727 ORTHO05D009078 3.7e-09 65.5 100 45.0
MELO3C016295.2 Cucumis melo HOM05D007727 ORTHO05D009078 6.3e-09 64.7 115 39.1
Gohir.A08G103450 Gossypium hirsutum HOM05D007727 ORTHO05D009078 6.3e-09 64.7 110 41.8
Nitab4.5_0001210g0030 Nicotiana tabacum HOM05D011491 ORTHO05D009078 8.3e-09 64.3 130 41.5
Rhsim02G0243600 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.4e-08 63.5 78 46.2
Gohir.A02G100000 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.8e-08 63.2 119 38.7
Nitab4.5_0002782g0050 Nicotiana tabacum HOM05D011491 ORTHO05D009078 3.1e-08 62.4 109 40.4
Sed0000706 Sechium edule HOM05D007727 ORTHO05D009078 3.1e-08 62.4 102 41.2
PGSC0003DMG400012146 Solanum tuberosum HOM05D011491 ORTHO05D009078 5.4e-08 61.6 139 36.0
Solyc08g082380.1 Solanum lycopersicum HOM05D011491 ORTHO05D009078 9.1e-08 60.8 127 39.4
AUR62010842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 2.0e-07 59.7 72 45.8
CANSAT21G1217 Cannabis sativa HOM05D007727 ORTHO05D009078 2.7e-07 59.3 51 58.8
Peaxi162Scf00074g00091 Petunia axillaris HOM05D011491 ORTHO05D009078 2.7e-07 59.3 120 37.5
Sed0007502 Sechium edule HOM05D007727 ORTHO05D009078 2.7e-07 59.3 98 36.7
Ciclev10022327m.g Citrus clementina HOM05D007727 ORTHO05D009078 3.5e-07 58.9 126 40.5
PGSC0003DMG400012147 Solanum tuberosum HOM05D011491 ORTHO05D009078 4.5e-07 58.5 138 36.2
PGSC0003DMG400012144 Solanum tuberosum HOM05D011491 ORTHO05D009078 7.7e-07 57.8 139 37.4
PGSC0003DMG400012145 Solanum tuberosum HOM05D011491 ORTHO05D009078 1.3e-06 57.0 140 37.1
CAN.G1804.7 Capsicum annuum HOM05D011491 ORTHO05D009078 5.0e-06 55.1 126 39.7
AUR62019842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 5.0e-06 55.1 68 42.6


User provided reference genes

Program Settings