Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 7.1e-43 176.8 85 100.0
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 4.5e-29 131.0 82 79.3
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 4.5e-29 131.0 85 76.5
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 2.9e-28 128.3 84 76.2
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 3.2e-27 124.8 85 76.5
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 4.6e-26 120.9 82 74.4
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 8.7e-25 116.7 87 65.5
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 1.3e-23 112.8 86 65.1
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 1.6e-23 112.5 85 64.7
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 3.7e-23 111.3 85 64.7
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.0e-21 105.5 86 59.3
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 2.0e-21 105.5 86 61.6
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 2.0e-21 105.5 85 57.6
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 2.0e-21 105.5 85 62.4
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 3.4e-21 104.8 89 62.9
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 4.5e-21 104.4 86 66.3
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 5.8e-21 104.0 83 60.2
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 1.7e-20 102.4 85 60.0
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 2.2e-20 102.1 76 61.8
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 8.4e-20 100.1 84 59.5
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.1e-19 99.8 81 63.0
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.4e-19 99.4 82 59.8
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.5e-19 98.6 81 63.0
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 4.2e-19 97.8 80 61.2
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 5.5e-19 97.4 79 60.8
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 1.2e-18 96.3 76 63.2
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 1.2e-18 96.3 82 59.8
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 2.1e-18 95.5 80 57.5
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 2.1e-18 95.5 80 57.5
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 2.1e-18 95.5 75 60.0
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 3.5e-18 94.7 81 59.3
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 3.5e-18 94.7 80 57.5
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 4.6e-18 94.4 80 60.0
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 6.0e-18 94.0 79 63.3
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 7.9e-18 93.6 81 59.3
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 7.9e-18 93.6 81 59.3
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 7.9e-18 93.6 79 58.2
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 7.9e-18 93.6 76 61.8
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.0e-17 93.2 81 59.3
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 1.0e-17 93.2 79 59.5
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.8e-17 92.4 82 58.5
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 1.8e-17 92.4 80 60.0
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 3.0e-17 91.7 84 56.0
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.9e-17 91.3 81 58.0
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 3.9e-17 91.3 85 57.6
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 5.1e-17 90.9 81 56.8
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 5.1e-17 90.9 81 56.8
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 6.7e-17 90.5 89 53.9
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 1.1e-16 89.7 85 56.5
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.1e-16 89.7 81 56.8
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 1.9e-16 89.0 83 54.2
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 1.9e-16 89.0 79 58.2
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 1.9e-16 89.0 84 53.6
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 2.5e-16 88.6 79 57.0
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 2.5e-16 88.6 80 57.5
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 3.3e-16 88.2 81 58.0
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 4.3e-16 87.8 85 56.5
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 5.7e-16 87.4 77 55.8
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 9.7e-16 86.7 72 56.9
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.3e-15 86.3 92 54.3
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.3e-15 86.3 81 58.0
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.2e-15 85.5 82 53.7
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 2.2e-15 85.5 79 55.7
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.8e-15 85.1 82 48.8
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 3.7e-15 84.7 81 58.0
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 6.3e-15 84.0 84 54.8
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 8.2e-15 83.6 85 50.6
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.1e-14 83.2 81 56.8
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.1e-14 83.2 81 56.8
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 1.1e-14 83.2 85 54.1
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.4e-14 82.8 75 54.7
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 1.4e-14 82.8 87 50.6
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 1.8e-14 82.4 90 53.3
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 2.4e-14 82.0 83 54.2
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 2.4e-14 82.0 85 50.6
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 2.4e-14 82.0 79 51.9
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 2.4e-14 82.0 81 55.6
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.1e-14 81.6 81 55.6
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 4.1e-14 81.3 82 53.7
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 4.1e-14 81.3 86 50.0
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 5.3e-14 80.9 79 50.6
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 6.9e-14 80.5 76 55.3
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 6.9e-14 80.5 84 52.4
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 9.0e-14 80.1 80 50.0
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 1.2e-13 79.7 91 49.5
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 1.5e-13 79.3 83 50.6
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 1.5e-13 79.3 88 51.1
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.5e-13 79.3 83 50.6
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 1.5e-13 79.3 87 49.4
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 2.0e-13 79.0 84 50.0
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 2.0e-13 79.0 84 50.0
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.6e-13 78.6 72 52.8
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.6e-13 78.6 82 52.4
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 3.4e-13 78.2 83 51.8
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 3.4e-13 78.2 76 52.6
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 4.5e-13 77.8 94 53.2
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 4.5e-13 77.8 78 51.3
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 4.5e-13 77.8 90 47.8
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 7.7e-13 77.0 74 50.0
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 7.7e-13 77.0 74 50.0
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 1.0e-12 76.6 76 55.3
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 1.0e-12 76.6 95 47.4
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 1.3e-12 76.3 80 53.8
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 1.7e-12 75.9 83 51.8
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 2.2e-12 75.5 79 54.4
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 2.9e-12 75.1 87 49.4
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 5.0e-12 74.3 83 50.6
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 8.5e-12 73.6 76 52.6
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.1e-11 73.2 85 45.9
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 1.1e-11 73.2 75 49.3
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 1.4e-11 72.8 79 46.8
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 1.4e-11 72.8 77 49.4
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 1.4e-11 72.8 77 49.4
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 1.4e-11 72.8 75 49.3
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 1.9e-11 72.4 82 51.2
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 1.9e-11 72.4 86 46.5
Cfa019066 Carpinus fangiana HOM05D003533 ORTHO05D004009 2.5e-11 72.0 85 49.4
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 3.2e-11 71.6 80 45.0
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 4.2e-11 71.2 73 52.1
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 4.2e-11 71.2 80 48.8
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 5.5e-11 70.9 74 50.0
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 5.5e-11 70.9 61 60.7
Actinidia34960 Actinidia chinensis HOM05D003533 ORTHO05D004009 7.2e-11 70.5 52 65.4
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 7.2e-11 70.5 61 60.7
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 7.2e-11 70.5 78 51.3
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 9.4e-11 70.1 77 48.1
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 1.6e-10 69.3 75 50.7
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 2.1e-10 68.9 84 45.2
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 2.1e-10 68.9 84 45.2
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 2.1e-10 68.9 84 45.2
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 2.1e-10 68.9 84 45.2
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 2.7e-10 68.6 83 47.0
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 6.1e-10 67.4 72 50.0
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 6.1e-10 67.4 80 50.0
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 6.1e-10 67.4 73 49.3
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 7.9e-10 67.0 92 42.4
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 7.9e-10 67.0 70 48.6
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 7.9e-10 67.0 80 43.8
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 7.9e-10 67.0 80 43.8
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.4e-09 66.2 87 44.8
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.4e-09 66.2 87 49.4
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 1.4e-09 66.2 80 45.0
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 1.8e-09 65.9 77 46.8
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 1.8e-09 65.9 83 44.6
Potri.015G070700 Populus trichocarpa HOM05D003533 ORTHO05D004009 3.0e-09 65.1 85 44.7
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 3.9e-09 64.7 77 46.8
Eucgr.C02738 Eucalyptus grandis HOM05D003533 ORTHO05D004009 3.9e-09 64.7 82 45.1
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 3.9e-09 64.7 74 44.6
Sabra15G0095000 Salix brachista HOM05D003533 ORTHO05D004009 5.1e-09 64.3 86 45.3
Sabra15G0095900 Salix brachista HOM05D003533 ORTHO05D004009 5.1e-09 64.3 86 45.3
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 1.9e-08 62.4 77 41.6
THA.LOC109116474 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 1.9e-08 62.4 77 46.8
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 3.3e-08 61.6 72 41.7
ClCG06G016690 Citrullus lanatus HOM05D003533 ORTHO05D004009 3.3e-08 61.6 61 54.1
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 3.3e-08 61.6 84 47.6
THA.LOC109116673 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 4.3e-08 61.2 77 44.2
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 5.7e-08 60.8 77 42.9
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 7.4e-08 60.5 74 43.2
Carub.0001s1865 Capsella rubella HOM05D003533 ORTHO05D004009 9.7e-08 60.1 89 41.6
Os06g0239200 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 9.7e-08 60.1 74 43.2
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 9.7e-08 60.1 80 43.8
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.3e-07 59.7 79 40.5
Haze_12125 Corylus avellana HOM05D003533 ORTHO05D004009 1.7e-07 59.3 78 44.9
Sabra12G0053900 Salix brachista HOM05D003533 ORTHO05D004009 1.7e-07 59.3 85 45.9
HanXRQChr02g0043831 Helianthus annuus HOM05D003533 ORTHO05D222724 2.2e-07 58.9 63 49.2
THA.LOC104821473 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 2.2e-07 58.9 78 43.6
HanXRQChr04g0107311 Helianthus annuus HOM05D003533 ORTHO05D004009 6.3e-07 57.4 88 38.6
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 8.2e-07 57.0 80 42.5
Potri.012G075800 Populus trichocarpa HOM05D003533 ORTHO05D004009 1.1e-06 56.6 85 42.4
DCAR_019271 Daucus carota HOM05D007037 ORTHO05D006691 2.4e-06 55.5 76 44.7
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 2.4e-06 55.5 80 41.2
BcaB02g10669 Brassica carinata HOM05D013399 ORTHO05D019752 3.1e-06 55.1 73 38.4
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 4.1e-06 54.7 79 39.2
Gohir.D12G053600 Gossypium hirsutum HOM05D019532 ORTHO05D025681 4.1e-06 54.7 89 40.4
SalBow5G4118 Salvia bowleyana HOM05D003533 ORTHO05D004009 5.3e-06 54.3 54 51.9
vmacro16586 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 6.9e-06 53.9 63 47.6
A06p27440 Brassica napus HOM05D013399 ORTHO05D004009 9.1e-06 53.5 75 40.0


User provided reference genes

Program Settings