Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 0.0e+00 1359.7 731 100.0
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 9.4e-285 983.4 751 71.4
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 1.7e-278 962.6 748 70.1
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 2.7e-276 955.3 740 70.7
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 1.1e-272 943.3 750 69.3
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 7.0e-272 940.6 748 69.3
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 5.0e-270 934.5 737 68.7
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 3.6e-268 928.3 737 67.8
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 5.0e-262 907.9 744 67.5
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 1.1e-253 880.2 749 66.2
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 3.0e-246 855.5 714 67.1
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 1.6e-196 690.3 749 52.5
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 4.6e-191 672.2 751 51.8
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 2.5e-184 649.8 742 51.1
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 2.2e-177 626.7 752 49.3
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 6.1e-175 618.6 749 49.0
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 2.8e-172 609.8 755 49.7
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 1.3e-169 600.9 754 49.6
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 3.8e-169 599.4 755 47.4
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 9.4e-168 594.7 735 48.8
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.4e-166 590.9 738 49.1
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 1.8e-166 590.5 694 49.4
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 1.8e-166 590.5 749 47.3
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 2.0e-165 587.0 752 47.2
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 2.6e-165 586.6 749 48.6
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 4.4e-165 585.9 696 50.4
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 6.3e-164 582.0 699 50.6
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 8.2e-164 581.6 701 50.2
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 3.1e-163 579.7 703 49.6
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 3.5e-162 576.2 723 46.9
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 3.2e-160 569.7 758 46.8
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 2.3e-158 563.5 752 46.9
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 1.4e-155 554.3 723 46.6
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 1.6e-154 550.8 693 47.2
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 3.5e-154 549.7 726 48.1
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 4.5e-154 549.3 721 46.0
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 8.5e-153 545.0 692 46.8
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 1.1e-152 544.7 701 46.9
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 1.9e-152 543.9 658 48.8
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 7.2e-152 542.0 726 45.3
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 2.0e-146 523.9 740 42.0
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 4.5e-146 522.7 741 42.0
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 7.7e-146 521.9 738 42.0
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 1.0e-142 511.5 744 44.0
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 4.0e-142 509.6 749 40.9
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 5.9e-138 495.7 786 41.3
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 6.1e-135 485.7 697 43.3
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 2.6e-133 480.3 334 76.0
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 1.7e-129 467.6 757 41.5
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 3.0e-129 466.8 759 40.8
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 8.6e-129 465.3 755 41.7
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 1.1e-128 464.9 758 41.3
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 5.2e-126 456.1 750 41.5
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 2.0e-125 454.1 714 40.9
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 5.8e-125 452.6 752 40.4
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 7.5e-125 452.2 729 42.7
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 4.9e-124 449.5 771 38.7
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 4.9e-124 449.5 771 38.7
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 7.0e-123 445.7 710 41.4
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 9.2e-123 445.3 721 40.9
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 2.1e-119 434.1 707 39.9
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 2.3e-118 430.6 746 39.5
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 5.2e-118 429.5 689 41.1
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 6.8e-118 429.1 750 38.8
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 8.9e-118 428.7 682 42.4
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 1.5e-117 427.9 715 39.3
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 1.2e-114 418.3 680 41.0
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 7.3e-112 409.1 800 38.0
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 2.1e-111 407.5 685 39.7
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 1.8e-110 404.4 723 37.3
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 2.6e-109 400.6 716 38.8
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 5.8e-109 399.4 678 40.0
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 1.3e-108 398.3 586 42.3
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 9.9e-101 372.1 697 38.2
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 1.2e-98 365.2 284 67.6
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 6.9e-94 349.4 478 47.5
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 9.3e-91 339.0 551 42.1
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 1.8e-89 334.7 760 33.2
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 1.1e-88 332.0 723 35.3
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 7.9e-82 309.3 272 58.8
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 6.7e-81 306.2 378 49.2
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 4.3e-80 303.5 207 80.2
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 4.3e-80 303.5 241 64.7
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 3.7e-79 300.4 567 38.3
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 3.1e-78 297.4 276 56.9
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 1.9e-75 288.1 270 57.4
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 2.0e-56 224.9 264 49.6
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 3.3e-56 224.2 249 49.4
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 5.5e-43 180.3 158 59.5
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 4.0e-41 174.1 157 60.5
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 1.1e-30 139.4 322 35.4
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 5.9e-29 133.7 97 66.0
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 1.4e-25 122.5 212 38.2
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 3.4e-16 91.3 88 48.9
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 3.7e-15 87.8 80 55.0
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 5.2e-09 67.4 231 26.8
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 5.2e-09 67.4 156 31.4
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 1.5e-08 65.9 70 52.9


User provided reference genes

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