Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 6.8e-195 683.7 323 100.0
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 1.3e-169 599.7 314 89.5
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 6.6e-166 587.4 314 87.3
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 1.9e-165 585.9 314 86.9
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 7.3e-165 583.9 310 87.7
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 1.2e-164 583.2 314 86.0
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 1.2e-164 583.2 314 85.7
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 4.7e-164 581.3 314 85.7
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 9.6e-157 557.0 308 83.8
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 6.2e-156 554.3 311 82.6
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 1.4e-155 553.1 314 80.9
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 3.1e-155 552.0 312 80.8
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 3.1e-155 552.0 311 81.0
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 6.9e-155 550.8 308 81.8
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 1.5e-154 549.7 314 84.7
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 2.0e-154 549.3 314 81.2
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 3.4e-154 548.5 314 81.5
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 7.6e-154 547.4 304 83.9
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 1.7e-153 546.2 309 82.5
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 1.7e-153 546.2 308 82.5
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 3.8e-153 545.0 309 80.6
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 6.4e-153 544.3 311 80.7
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.4e-152 543.1 308 82.1
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 1.4e-152 543.1 305 82.0
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 1.9e-152 542.7 312 79.5
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 2.4e-152 542.3 305 82.3
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 4.2e-152 541.6 306 82.0
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 4.2e-152 541.6 311 80.1
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 4.2e-152 541.6 315 80.0
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 3.5e-151 538.5 314 79.0
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 3.5e-151 538.5 308 81.2
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 4.6e-151 538.1 315 80.0
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 4.6e-151 538.1 315 80.0
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 4.6e-151 538.1 308 80.2
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 4.6e-151 538.1 314 78.3
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 7.9e-151 537.3 314 79.9
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 7.9e-151 537.3 311 79.4
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 1.0e-150 537.0 308 79.5
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 1.8e-150 536.2 314 78.0
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 2.3e-150 535.8 318 78.6
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 6.7e-150 534.3 305 79.7
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 1.1e-149 533.5 307 80.8
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 1.5e-149 533.1 305 80.0
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 1.9e-149 532.7 308 79.2
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 3.3e-149 531.9 308 79.9
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.3e-149 531.9 308 79.5
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.3e-149 531.9 308 79.9
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 7.4e-149 530.8 308 79.2
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 9.6e-149 530.4 305 79.3
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 1.3e-148 530.0 302 80.8
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 2.1e-148 529.3 311 77.8
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 2.8e-148 528.9 310 78.7
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 3.6e-148 528.5 305 79.7
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 4.8e-148 528.1 314 77.4
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 8.1e-148 527.3 304 80.9
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 1.1e-147 526.9 307 79.8
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.8e-147 526.2 308 77.6
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.4e-147 525.8 308 78.6
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 2.4e-147 525.8 321 77.6
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 4.0e-147 525.0 315 76.5
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 5.3e-147 524.6 308 78.6
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 6.9e-147 524.2 308 77.6
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 1.2e-146 523.5 306 78.8
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.5e-146 523.1 309 78.6
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 2.0e-146 522.7 304 80.3
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 2.6e-146 522.3 314 73.9
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 3.4e-146 521.9 304 80.3
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 3.4e-146 521.9 305 77.4
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 5.8e-146 521.2 303 79.2
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 5.8e-146 521.2 305 80.3
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 7.6e-146 520.8 304 80.3
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 7.6e-146 520.8 308 77.3
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 1.3e-145 520.0 308 75.6
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 2.9e-145 518.8 304 79.3
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 8.4e-145 517.3 304 79.9
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 1.4e-144 516.5 304 79.6
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 1.9e-144 516.2 305 79.0
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 2.4e-144 515.8 304 79.6
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 2.4e-144 515.8 314 76.1
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 3.2e-144 515.4 305 77.4
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 9.3e-144 513.8 304 78.9
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.2e-143 513.5 305 76.4
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 3.5e-143 511.9 302 77.2
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 7.9e-143 510.8 309 76.7
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.8e-142 509.6 309 76.4
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 2.3e-142 509.2 304 77.3
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 1.1e-141 506.9 304 75.7
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 1.9e-141 506.1 304 75.3
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 2.5e-141 505.8 304 76.6
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 9.6e-141 503.8 304 75.3
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 2.4e-139 499.2 304 74.0
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 5.3e-139 498.0 302 75.8
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 9.0e-139 497.3 313 74.8
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 5.8e-138 494.6 304 74.3
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 1.3e-137 493.4 305 76.7
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 4.9e-137 491.5 302 73.8
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 8.4e-137 490.7 304 74.0
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 4.6e-135 485.0 304 74.0
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 6.3e-132 474.6 311 70.7
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 3.1e-131 472.2 311 69.5
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 2.5e-128 462.6 304 67.8
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 3.6e-127 458.8 306 72.5
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 3.0e-126 455.7 305 71.1
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.1e-125 453.8 306 71.9
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 5.3e-123 444.9 306 69.9
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 3.4e-122 442.2 313 68.7
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 5.9e-122 441.4 307 63.8
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 5.5e-120 434.9 333 65.5
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 5.5e-120 434.9 333 65.5
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 1.4e-118 430.3 274 71.9
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 8.8e-118 427.6 309 62.8
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 1.1e-117 427.2 309 60.8
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 1.5e-117 426.8 304 63.2
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 4.4e-117 425.2 241 80.1
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 2.2e-116 422.9 284 68.0
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 2.8e-116 422.5 302 67.5
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 2.2e-113 412.9 437 51.5
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 2.3e-110 402.9 302 59.3
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 7.7e-106 387.9 304 58.6
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 1.3e-97 360.5 201 83.6
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 4.7e-95 352.1 199 81.4
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 2.2e-92 343.2 204 76.5
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 1.8e-91 340.1 176 86.9
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 5.0e-89 332.0 249 66.3
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 8.6e-89 331.3 175 86.3
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 2.6e-85 319.7 209 70.3
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 1.7e-84 317.0 178 82.6
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 7.8e-82 308.1 309 47.9
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 4.7e-71 272.3 305 49.8
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 3.1e-46 189.9 107 76.6
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 2.2e-44 183.7 209 45.5
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 1.1e-38 164.9 87 82.8
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 4.9e-36 156.0 100 73.0
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 9.3e-35 151.8 94 72.3
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 6.2e-31 139.0 73 86.3
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 2.0e-29 134.0 78 74.4
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 1.0e-25 121.7 315 28.3
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 2.3e-25 120.6 315 28.9
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 5.1e-25 119.4 91 61.5
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 2.1e-23 114.0 74 74.3
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 4.2e-19 99.8 65 73.8
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 4.5e-13 79.7 155 32.9
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 1.1e-11 75.1 294 25.9
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 7.9e-10 68.9 49 69.4
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 6.7e-09 65.9 41 65.9
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.1e-08 65.1 48 58.3
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 5.3e-06 56.2 43 65.1


User provided reference genes

Program Settings