Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 3.1e-209 731.9 462 100.0
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.3e-183 646.7 462 91.8
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 1.3e-122 444.1 431 66.6
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 7.4e-118 428.3 442 64.0
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 5.1e-111 405.6 506 54.7
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 2.9e-106 389.8 433 57.7
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 3.5e-104 382.9 446 56.5
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 2.5e-97 360.1 384 57.6
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 9.3e-97 358.2 400 57.2
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 2.0e-91 340.5 401 52.9
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 2.0e-91 340.5 401 52.9
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 2.2e-90 337.0 441 52.2
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 2.9e-90 336.7 427 52.5
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 1.0e-87 328.2 370 57.3
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 2.3e-87 327.0 377 52.3
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 6.7e-87 325.5 370 56.5
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 8.8e-87 325.1 429 49.9
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 1.1e-86 324.7 419 53.0
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 3.7e-85 319.7 402 51.7
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 3.7e-85 319.7 402 51.7
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 3.4e-83 313.2 374 51.6
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 3.6e-80 303.1 454 48.2
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 3.9e-79 299.7 406 48.3
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 8.8e-79 298.5 436 49.1
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 7.4e-78 295.4 422 45.3
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.7e-77 294.3 365 51.2
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 4.8e-77 292.7 421 49.9
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.0e-74 285.0 426 49.3
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.2e-71 272.7 393 50.9
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 2.6e-70 270.4 361 53.2
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 1.7e-69 267.7 372 48.9
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 1.7e-69 267.7 367 49.6
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 8.2e-69 265.4 371 48.2
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.5e-65 254.6 423 45.4
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.2e-64 251.5 369 47.2
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 2.1e-64 250.8 406 46.8
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 5.7e-62 242.7 404 47.0
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.7e-61 241.1 397 44.8
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 2.2e-61 240.7 313 49.5
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 8.3e-61 238.8 395 45.8
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.2e-59 235.0 372 45.2
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.6e-59 234.6 374 49.7
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 2.7e-59 233.8 456 38.8
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 2.9e-58 230.3 439 42.8
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 3.8e-58 229.9 445 39.1
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 6.5e-58 229.2 485 37.1
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 6.5e-58 229.2 486 37.0
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 2.5e-57 227.3 401 46.4
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 2.5e-57 227.3 401 46.4
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 3.2e-57 226.9 437 39.6
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 9.5e-57 225.3 406 44.3
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 1.8e-55 221.1 362 43.9
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 4.4e-54 216.5 418 42.1
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 6.3e-53 212.6 442 41.0
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.4e-52 211.5 418 44.0
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 1.8e-52 211.1 396 41.4
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 4.5e-51 206.5 413 44.8
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 2.5e-49 200.7 419 42.5
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 5.6e-49 199.5 407 42.8
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 2.1e-48 197.6 417 41.0
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 8.0e-48 195.7 367 42.0
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 4.0e-47 193.4 363 39.9
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 1.2e-46 191.8 483 38.1
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 4.4e-46 189.9 414 41.5
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 1.3e-45 188.3 380 40.5
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 1.3e-45 188.3 374 39.8
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 1.7e-45 188.0 424 38.7
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.0e-43 181.0 293 47.4
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 4.6e-43 179.9 275 47.6
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 5.9e-43 179.5 432 40.0
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 7.8e-43 179.1 233 48.9
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.0e-42 178.7 431 38.1
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 1.7e-42 177.9 446 36.3
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 2.3e-42 177.6 416 36.8
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.3e-42 177.6 360 41.4
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 3.9e-42 176.8 441 35.6
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.9e-42 176.8 319 40.8
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 5.0e-42 176.4 442 36.4
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.5e-41 174.9 456 35.7
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 7.3e-41 172.6 419 36.0
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 9.5e-41 172.2 439 38.5
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.2e-40 171.8 292 45.5
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 2.1e-40 171.0 454 35.2
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 2.1e-40 171.0 373 42.1
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 3.1e-39 167.2 358 41.1
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 2.0e-38 164.5 325 45.2
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 7.5e-38 162.5 450 39.6
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 9.8e-38 162.2 420 37.9
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 2.9e-37 160.6 274 48.5
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 4.9e-37 159.8 398 39.2
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 6.4e-37 159.5 537 33.0
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 1.6e-35 154.8 504 34.1
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 1.6e-35 154.8 393 33.6
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 2.0e-35 154.5 274 47.1
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 3.5e-35 153.7 400 38.8
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 6.0e-35 152.9 404 37.1
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 1.0e-34 152.1 374 35.0
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 3.9e-34 150.2 274 47.8
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 8.6e-34 149.1 466 36.7
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 5.6e-33 146.4 399 36.6
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 9.5e-33 145.6 399 37.8
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.1e-32 144.4 352 36.4
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 2.1e-32 144.4 399 37.6
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.4e-31 141.7 233 48.9
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 1.4e-31 141.7 412 35.4
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 2.3e-31 141.0 484 34.1
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 2.3e-31 141.0 211 53.1
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 5.8e-30 136.3 404 37.6
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 5.8e-30 136.3 431 37.1
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 7.5e-30 136.0 253 44.7
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 7.5e-30 136.0 230 50.0
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 1.7e-29 134.8 409 32.8
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.7e-29 134.8 243 47.3
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.9e-28 131.3 235 47.2
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 4.6e-27 126.7 235 46.4
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 1.0e-26 125.6 385 31.4
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 3.0e-26 124.0 473 33.6
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 3.9e-26 123.6 393 32.6
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 3.9e-26 123.6 374 30.5
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 5.1e-26 123.2 354 34.2
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 6.6e-26 122.9 473 31.9
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 8.6e-26 122.5 473 32.8
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 1.9e-25 121.3 213 46.5
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 5.6e-25 119.8 447 33.1
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 1.6e-24 118.2 474 32.9
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 3.6e-24 117.1 257 43.2
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 3.6e-24 117.1 257 43.2
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.4e-23 114.4 449 31.8
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 4.0e-23 113.6 473 33.0
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 4.0e-23 113.6 417 31.7
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 6.8e-23 112.8 432 36.1
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 8.9e-23 112.5 416 32.7
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 3.4e-22 110.5 442 34.8
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 4.4e-22 110.2 308 37.0
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 3.8e-21 107.1 428 33.2
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 4.9e-21 106.7 196 44.9
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 4.6e-19 100.1 234 41.5
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 2.3e-18 97.8 363 28.7
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 5.1e-18 96.7 362 28.5
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 6.6e-18 96.3 159 45.9
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 1.9e-17 94.7 258 34.9
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 4.3e-17 93.6 214 37.9
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 4.3e-17 93.6 287 32.4
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 4.3e-17 93.6 145 45.5
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 7.3e-17 92.8 173 39.3
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.2e-16 92.0 148 40.5
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 2.1e-16 91.3 371 31.5
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 2.4e-15 87.8 196 36.7
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.2e-14 85.5 230 36.5
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 1.5e-14 85.1 220 35.0
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 1.5e-14 85.1 137 44.5
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 4.4e-14 83.6 228 35.5
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 7.6e-14 82.8 370 29.7
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.1e-12 79.0 394 28.9
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 5.4e-12 76.6 146 41.8
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 7.1e-12 76.3 138 38.4
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 1.6e-11 75.1 225 34.2
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 2.1e-11 74.7 171 35.7
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.3e-10 72.0 137 48.9
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 3.0e-10 70.9 107 43.9
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 8.7e-10 69.3 220 33.6
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 2.8e-08 64.3 236 30.9
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 6.2e-08 63.2 143 35.0
AagrBONN_evm.TU.Sc2ySwM_117.778 Anthoceros agrestis HOM05D025130 ORTHO05D004035 4.0e-07 60.5 204 31.4
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 1.2e-06 58.9 80 46.2
TAR628G0576 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.2e-06 58.9 129 34.1
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 2.0e-06 58.2 176 35.8
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 2.6e-06 57.8 226 31.4
MD02G1269600 Malus domestica HOM05D003733 ORTHO05D004035 3.4e-06 57.4 131 32.8
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 5.8e-06 56.6 149 33.6
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 5.8e-06 56.6 304 30.6
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 5.8e-06 56.6 170 35.9


User provided reference genes

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