Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 0.0e+00 1281.2 714 100.0
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 0.0e+00 1075.1 718 82.5
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 8.5e-299 1030.0 722 79.4
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 1.1e-298 1029.6 725 80.8
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 2.5e-298 1028.5 715 81.3
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 1.0e-283 979.9 714 78.2
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 3.7e-278 961.4 722 74.1
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 8.3e-278 960.3 721 73.9
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 6.6e-275 950.7 714 73.9
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 1.1e-272 943.3 690 77.5
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 6.6e-267 924.1 685 77.1
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 2.8e-265 918.7 726 70.9
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 3.0e-259 898.7 727 70.0
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 2.1e-257 892.5 728 68.5
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 4.4e-255 884.8 732 69.5
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 7.6e-255 884.0 728 68.3
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 4.9e-254 881.3 722 69.1
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 1.8e-248 862.8 814 62.3
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 1.8e-248 862.8 724 68.1
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 1.5e-247 859.8 724 68.4
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 7.6e-247 857.4 721 67.8
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 2.2e-246 855.9 726 67.5
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 3.5e-244 848.6 723 66.7
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 3.6e-241 838.6 727 65.1
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 4.5e-239 831.6 697 66.6
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 1.4e-237 826.6 728 64.7
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 1.4e-237 826.6 726 65.8
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 1.2e-236 823.5 730 65.9
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 2.1e-236 822.8 731 64.4
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 1.8e-235 819.7 724 65.1
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 6.7e-235 817.8 696 66.2
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 2.5e-234 815.8 719 64.7
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 2.4e-232 809.3 729 63.8
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 2.0e-231 806.2 672 68.6
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 2.6e-231 805.8 725 64.0
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 3.4e-231 805.4 725 64.1
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 7.6e-231 804.3 724 64.2
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 9.9e-231 803.9 733 63.8
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 1.3e-230 803.5 731 64.0
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 7.1e-229 797.7 707 65.9
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 6.0e-228 794.7 729 63.6
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 1.0e-227 793.9 753 61.8
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 1.3e-227 793.5 731 63.2
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 1.9e-226 789.6 721 62.6
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 2.5e-226 789.3 730 63.6
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 2.5e-226 789.3 725 64.6
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 3.3e-226 788.9 723 62.8
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 1.6e-225 786.6 721 62.0
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 1.6e-225 786.6 725 61.1
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 2.8e-225 785.8 726 63.8
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 1.8e-224 783.1 728 62.1
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 2.4e-224 782.7 725 60.8
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 3.1e-224 782.3 725 62.9
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 1.5e-223 780.0 722 62.0
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 2.0e-223 779.6 747 61.6
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 7.6e-223 777.7 726 60.7
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 1.7e-222 776.5 726 60.9
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 7.1e-221 771.2 724 61.7
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 4.6e-220 768.5 706 62.0
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 1.3e-219 766.9 722 61.2
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 1.3e-219 766.9 726 60.3
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 1.5e-218 763.5 729 63.1
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.3e-217 760.4 795 59.5
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 1.1e-216 757.3 726 61.3
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 1.8e-216 756.5 720 60.3
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 4.1e-216 755.4 719 61.1
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 9.0e-216 754.2 735 60.0
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 4.2e-213 745.3 722 60.0
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 4.2e-213 745.3 722 60.0
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 2.0e-210 736.5 739 58.7
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 2.8e-209 732.6 704 60.8
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 5.9e-207 724.9 818 54.8
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 1.3e-206 723.8 736 58.6
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 2.9e-206 722.6 727 60.8
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 5.7e-202 708.4 727 58.3
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 5.3e-200 701.8 721 59.4
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 4.5e-199 698.7 722 56.9
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 1.3e-198 697.2 722 56.6
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 3.8e-198 695.7 662 63.1
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 2.1e-196 689.9 725 59.0
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 2.8e-193 679.5 745 55.6
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 1.8e-192 676.8 669 58.3
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 7.0e-192 674.9 691 58.3
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 1.7e-190 670.2 695 57.3
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 1.1e-184 651.0 771 53.2
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 4.8e-177 625.5 728 52.1
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 1.1e-176 624.4 725 53.4
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 4.7e-172 609.0 728 50.7
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 2.1e-164 583.6 671 54.4
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 2.3e-158 563.5 595 58.3
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 3.0e-158 563.1 726 49.0
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 3.0e-142 510.0 577 53.4
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 7.3e-141 505.4 362 77.3
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 4.8e-132 476.1 547 54.8
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 8.4e-129 465.3 357 72.3
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 6.2e-124 449.1 427 62.1
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 1.4e-123 448.0 579 50.3
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 2.4e-120 437.2 299 77.9
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 6.7e-110 402.5 427 57.6
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 2.6e-106 390.6 264 78.8
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 9.1e-91 339.0 373 53.6
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 3.1e-83 313.9 774 31.9
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.6e-79 301.6 343 56.3
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 1.1e-77 295.4 455 44.2
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 1.9e-72 278.1 728 30.2
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 2.1e-71 274.6 688 29.9
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 8.0e-71 272.7 504 41.7
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 3.8e-65 253.8 373 45.6
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 4.2e-64 250.4 760 27.9
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 8.0e-63 246.1 711 29.1
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 3.0e-62 244.2 663 32.4
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 5.2e-62 243.4 272 53.3
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 3.0e-33 147.9 134 64.9
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 3.0e-33 147.9 106 77.4
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 5.4e-27 127.1 84 70.2
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 3.6e-23 114.4 144 50.7
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 2.4e-19 101.7 183 42.1
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 1.2e-18 99.4 502 23.9
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 2.1e-18 98.6 70 74.3
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.0e-17 96.3 137 44.5
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 5.6e-16 90.5 124 43.5
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.1e-15 88.6 55 85.5
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 1.4e-14 85.9 99 49.5
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 9.0e-14 83.2 101 52.5
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 2.6e-13 81.6 97 49.5
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 5.8e-13 80.5 118 38.1
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 2.2e-12 78.6 59 67.8
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 3.2e-11 74.7 94 48.9
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 4.2e-11 74.3 240 29.2
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 9.3e-11 73.2 55 69.1
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 8.1e-07 60.1 41 75.6


User provided reference genes

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