Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 2.2e-48 195.3 98 100.0
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 3.6e-30 134.8 101 69.3
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 6.7e-29 130.6 98 68.4
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 2.0e-28 129.0 101 66.3
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 2.2e-27 125.6 101 63.4
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 2.2e-24 115.5 98 64.3
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.1e-23 113.2 98 62.2
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 3.2e-23 111.7 99 64.6
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 4.2e-23 111.3 99 61.6
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.6e-22 109.4 99 64.6
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 3.6e-22 108.2 99 61.6
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 4.7e-22 107.8 103 56.3
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.4e-21 106.3 98 61.2
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 6.7e-21 104.0 90 62.2
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 8.8e-21 103.6 100 60.0
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 2.0e-20 102.4 99 62.6
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 3.3e-20 101.7 102 57.8
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 7.4e-20 100.5 97 58.8
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 4.8e-19 97.8 98 57.1
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 1.8e-18 95.9 101 56.4
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 3.1e-18 95.1 99 55.6
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 4.1e-18 94.7 95 55.8
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 5.9e-17 90.9 100 55.0
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 7.7e-17 90.5 78 65.4
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.0e-16 90.1 107 50.5
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 1.3e-16 89.7 100 54.0
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.3e-16 89.7 100 54.0
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 2.9e-16 88.6 98 53.1
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.8e-16 88.2 100 53.0
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 3.8e-16 88.2 98 52.0
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 5.0e-16 87.8 100 53.0
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 6.5e-16 87.4 101 53.5
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 1.1e-15 86.7 92 55.4
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.5e-15 86.3 98 52.0
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.9e-15 85.9 86 54.7
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.9e-15 85.9 99 54.5
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 1.9e-15 85.9 98 49.0
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 1.9e-15 85.9 99 53.5
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.5e-15 85.5 98 53.1
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 4.2e-15 84.7 89 55.1
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 5.5e-15 84.3 105 50.5
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 7.2e-15 84.0 90 52.2
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 2.1e-14 82.4 102 48.0
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 2.1e-14 82.4 89 50.6
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 4.7e-14 81.3 98 53.1
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 6.1e-14 80.9 99 53.5
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 6.1e-14 80.9 101 48.5
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 6.1e-14 80.9 103 50.5
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 8.0e-14 80.5 100 52.0
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 1.0e-13 80.1 99 50.5
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 1.0e-13 80.1 99 50.5
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 1.0e-13 80.1 99 50.5
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.8e-13 79.3 95 51.6
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 2.3e-13 79.0 92 51.1
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 2.3e-13 79.0 90 48.9
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 2.3e-13 79.0 89 49.4
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.3e-13 79.0 98 50.0
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 3.0e-13 78.6 105 47.6
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 4.0e-13 78.2 85 55.3
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 4.0e-13 78.2 91 49.5
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 5.2e-13 77.8 86 48.8
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 6.8e-13 77.4 93 48.4
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 6.8e-13 77.4 98 51.0
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 8.8e-13 77.0 100 50.0
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 1.5e-12 76.3 89 50.6
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 2.0e-12 75.9 105 48.6
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 2.0e-12 75.9 89 46.1
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 2.6e-12 75.5 99 50.5
Lalb_Chr13g0295291 Lupinus albus HOM05D005059 ORTHO05D004248 4.4e-12 74.7 68 60.3
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 5.7e-12 74.3 100 49.0
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 7.5e-12 73.9 103 46.6
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 9.8e-12 73.6 90 46.7
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 1.3e-11 73.2 63 65.1
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.7e-11 72.8 100 50.0
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 4.8e-11 71.2 102 46.1
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 8.3e-11 70.5 92 45.7
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 8.3e-11 70.5 100 42.0
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 8.3e-11 70.5 52 69.2
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 8.3e-11 70.5 100 49.0
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 8.3e-11 70.5 100 49.0
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 1.4e-10 69.7 91 49.5
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 3.1e-10 68.6 101 47.5
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 5.4e-10 67.8 101 45.5
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 7.0e-10 67.4 58 58.6
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 7.0e-10 67.4 55 61.8
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 9.1e-10 67.0 91 44.0
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 1.2e-09 66.6 91 46.2
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.0e-09 65.9 89 43.8
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 3.5e-09 65.1 97 40.2
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 4.5e-09 64.7 93 43.0
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.0e-08 63.5 101 46.5
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 1.3e-08 63.2 97 39.2
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 2.2e-08 62.4 99 41.4
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 2.2e-08 62.4 88 47.7
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 5.0e-08 61.2 89 43.8
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 5.0e-08 61.2 73 47.9
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 5.0e-08 61.2 58 55.2
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 8.5e-08 60.5 91 44.0
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 1.1e-07 60.1 97 38.1
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 1.1e-07 60.1 99 39.4
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 1.1e-07 60.1 99 39.4
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 1.1e-07 60.1 99 39.4
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 1.1e-07 60.1 63 55.6
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.9e-07 59.3 97 42.3
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.9e-07 59.3 86 44.2
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 2.5e-07 58.9 97 40.2
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 2.5e-07 58.9 77 45.5
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 3.2e-07 58.5 99 37.4
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 3.2e-07 58.5 99 37.4
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 4.2e-07 58.2 99 39.4
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 4.2e-07 58.2 93 40.9
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 5.5e-07 57.8 99 39.4
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 9.4e-07 57.0 99 38.4
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 2.7e-06 55.5 50 58.0
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 3.6e-06 55.1 61 54.1
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 4.7e-06 54.7 50 58.0
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 4.7e-06 54.7 50 58.0
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 8.0e-06 53.9 99 41.4
PSO339G2616 Papaver somniferum HOM05D005059 ORTHO05D004248 8.0e-06 53.9 101 41.6


User provided reference genes

Program Settings