Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 1.7e-188 662.5 332 100.0
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 5.6e-160 567.8 332 82.2
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 3.7e-156 555.1 332 81.9
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 4.9e-156 554.7 328 83.2
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 9.2e-155 550.4 330 82.4
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 3.0e-153 545.4 326 81.9
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 1.5e-149 533.1 331 79.5
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 1.4e-134 483.4 326 71.5
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 2.4e-134 482.6 322 72.0
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 3.4e-133 478.8 323 71.5
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 1.1e-131 473.8 320 70.0
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 1.9e-131 473.0 323 70.3
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 9.3e-131 470.7 322 69.6
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 4.6e-130 468.4 329 68.1
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 6.0e-130 468.0 323 73.7
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 4.3e-128 461.8 267 82.8
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 5.6e-128 461.5 332 66.9
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 7.4e-128 461.1 319 68.3
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 2.1e-127 459.5 320 69.1
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 4.8e-127 458.4 332 66.9
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 8.1e-127 457.6 321 70.4
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 1.8e-126 456.4 332 67.8
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 4.0e-126 455.3 331 66.8
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 5.3e-126 454.9 319 67.7
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 5.3e-126 454.9 321 66.0
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 6.9e-126 454.5 332 66.3
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 9.0e-126 454.1 321 68.5
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 1.5e-125 453.4 320 70.3
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 2.0e-125 453.0 320 69.4
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 2.0e-125 453.0 332 66.0
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 2.0e-125 453.0 332 66.3
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 2.6e-125 452.6 320 69.4
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 2.6e-125 452.6 320 69.7
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 3.4e-125 452.2 320 69.7
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.4e-125 452.2 332 65.7
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 3.4e-125 452.2 320 68.4
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 7.6e-125 451.1 320 70.0
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 7.6e-125 451.1 331 67.1
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.3e-124 450.3 323 68.1
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 1.7e-124 449.9 320 69.4
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 2.2e-124 449.5 325 66.5
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 2.9e-124 449.1 320 69.4
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 2.9e-124 449.1 337 65.0
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 3.8e-124 448.7 320 68.8
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 3.8e-124 448.7 320 68.4
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 6.4e-124 448.0 320 69.7
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 1.1e-123 447.2 323 67.8
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 1.1e-123 447.2 321 64.2
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 1.9e-123 446.4 320 69.1
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 5.5e-123 444.9 320 68.8
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 5.5e-123 444.9 320 68.8
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 3.5e-122 442.2 320 66.9
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 4.6e-122 441.8 321 65.1
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 4.6e-122 441.8 319 65.5
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 7.9e-122 441.0 321 64.5
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 1.0e-121 440.7 320 67.8
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 1.3e-121 440.3 318 64.5
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 2.3e-121 439.5 320 68.4
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 2.3e-121 439.5 319 65.2
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 1.5e-120 436.8 320 66.9
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 1.5e-120 436.8 321 64.5
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 4.3e-120 435.3 355 61.7
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 9.6e-120 434.1 293 69.6
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 2.8e-119 432.6 319 64.9
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 3.7e-119 432.2 266 80.8
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 1.4e-118 430.3 319 63.6
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.8e-118 429.9 352 61.4
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 5.3e-118 428.3 319 64.6
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 5.3e-118 428.3 318 64.2
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 9.0e-118 427.6 295 70.2
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 5.8e-117 424.9 324 64.8
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 8.4e-116 421.0 325 61.2
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 1.9e-115 419.9 324 62.3
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 2.5e-115 419.5 324 63.6
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 3.2e-115 419.1 329 60.8
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 5.5e-115 418.3 324 65.7
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 3.5e-114 415.6 332 62.0
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 6.0e-114 414.8 302 67.5
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 3.3e-112 409.1 354 56.5
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 3.7e-111 405.6 327 62.1
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 1.8e-110 403.3 351 59.8
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 3.1e-110 402.5 366 55.2
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 9.0e-110 401.0 320 61.6
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 9.0e-110 401.0 374 55.9
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 2.6e-109 399.4 321 61.7
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 4.5e-109 398.7 323 61.0
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 1.3e-108 397.1 319 61.8
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 3.8e-108 395.6 333 61.0
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 3.2e-107 392.5 333 60.4
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 1.2e-106 390.6 318 60.7
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 1.9e-104 383.3 323 61.3
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 1.4e-102 377.1 324 63.0
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 6.9e-102 374.8 292 62.7
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 1.5e-101 373.6 319 57.1
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 3.6e-98 362.5 321 57.9
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 5.1e-97 358.6 326 55.2
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.7e-95 353.6 277 62.1
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 2.2e-92 343.2 247 68.0
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 5.0e-92 342.0 321 56.1
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 4.2e-91 339.0 231 70.6
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 9.4e-91 337.8 256 64.1
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 6.7e-89 331.6 295 55.9
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 4.4e-88 328.9 323 50.8
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 2.4e-86 323.2 186 81.2
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 2.2e-84 316.6 328 50.9
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 2.6e-80 303.1 183 76.5
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 1.7e-76 290.4 324 48.1
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 1.4e-73 280.8 325 45.2
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 1.4e-73 280.8 324 45.4
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 8.8e-73 278.1 211 62.6
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 9.8e-72 274.6 210 62.9
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 8.3e-71 271.6 327 43.4
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 8.3e-63 245.0 157 70.7
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 3.0e-57 226.5 323 41.8
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 4.4e-56 222.6 143 81.1
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 5.4e-54 215.7 170 64.1
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 8.0e-50 201.8 151 62.3
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 3.7e-47 193.0 121 70.2
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 7.0e-46 188.7 165 55.8
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 1.2e-42 177.9 365 33.4
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 1.5e-40 171.0 198 42.9
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 5.4e-38 162.5 349 33.0
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 7.1e-38 162.2 203 51.2
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 7.3e-35 152.1 315 34.6
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.4e-30 137.9 144 52.1
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 7.8e-29 132.1 354 31.4
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 1.3e-23 114.8 119 52.1
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 4.3e-19 99.8 60 80.0
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 2.6e-16 90.5 76 56.6
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 5.4e-14 82.8 245 26.5
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 9.3e-14 82.0 59 55.9
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 2.8e-10 70.5 59 50.8
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 1.4e-09 68.2 78 50.0
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 5.3e-09 66.2 65 49.2
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 6.9e-09 65.9 60 51.7
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 2.0e-08 64.3 66 48.5


User provided reference genes

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