Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0014153 Lotus japonicus HOM05D001186 ORTHO05D000971 1.3e-74 283.1 154 100.0
AL3G31640 Arabidopsis lyrata HOM05D001186 ORTHO05D000971 1.4e-09 67.0 64 54.7
AT3G18360 Arabidopsis thaliana HOM05D001186 ORTHO05D000971 7.1e-09 64.7 65 52.3
Dinv31630 Davidia involucrata HOM05D001186 ORTHO05D000971 7.1e-09 64.7 62 56.5
COL.COLO4_07638 Corchorus olitorius HOM05D001186 ORTHO05D000971 9.3e-09 64.3 77 46.8
BcaC09g48794 Brassica carinata HOM05D001186 ORTHO05D000971 1.2e-08 63.9 65 50.8
A01p35980 Brassica napus HOM05D001186 ORTHO05D000971 1.2e-08 63.9 65 50.8
C01p45850 Brassica napus HOM05D001186 ORTHO05D000971 1.2e-08 63.9 65 50.8
BolC1t04547H Brassica oleracea HOM05D001186 ORTHO05D000971 1.2e-08 63.9 65 50.8
BraA01t03679Z Brassica rapa HOM05D001186 ORTHO05D000971 1.2e-08 63.9 65 50.8
Ciclev10023791m.g Citrus clementina HOM05D001186 ORTHO05D000971 1.2e-08 63.9 66 53.0
Nitab4.5_0002906g0010 Nicotiana tabacum HOM05D001186 ORTHO05D000971 1.2e-08 63.9 73 49.3
Gohir.A05G321500 Gossypium hirsutum HOM05D001186 ORTHO05D000971 1.6e-08 63.5 104 46.2
Thecc.02G227800 Theobroma cacao HOM05D001186 ORTHO05D000971 1.6e-08 63.5 95 43.2
Cfa019761 Carpinus fangiana HOM05D001186 ORTHO05D000971 2.1e-08 63.2 113 38.9
FAN08G3585 Fragaria x ananassa HOM05D001186 ORTHO05D000971 2.1e-08 63.2 91 48.4
Aa31LG8G5190 Aethionema arabicum HOM05D001186 ORTHO05D000971 2.7e-08 62.8 67 47.8
CARHR093710 Cardamine hirsuta HOM05D001186 ORTHO05D000971 2.7e-08 62.8 64 50.0
Medtr6g084200 Medicago truncatula HOM05D001186 ORTHO05D000971 2.7e-08 62.8 114 43.0
Potri.015G046600 Populus trichocarpa HOM05D001186 ORTHO05D000971 2.7e-08 62.8 88 43.2
Sed0016046 Sechium edule HOM05D001186 ORTHO05D000971 2.7e-08 62.8 48 58.3
Carub.0003s1814 Capsella rubella HOM05D001186 ORTHO05D000971 3.5e-08 62.4 86 46.5
FAN13G2378 Fragaria x ananassa HOM05D001186 ORTHO05D000971 3.5e-08 62.4 93 47.3
FvH4_5g11980 Fragaria vesca HOM05D001186 ORTHO05D000971 4.6e-08 62.0 93 47.3
Oeu008243.1 Olea europaea HOM05D001186 ORTHO05D000971 4.6e-08 62.0 89 47.2
Rhsim08G0133100 Rhododendron simsii HOM05D001186 ORTHO05D000971 4.6e-08 62.0 71 49.3
Solyc03g119410.1 Solanum lycopersicum HOM05D001186 ORTHO05D000971 4.6e-08 62.0 60 56.7
Cc11_g10020 Coffea canephora HOM05D001186 ORTHO05D000971 6.0e-08 61.6 77 46.8
Duzib205G0230 Durio zibethinus HOM05D001186 ORTHO05D000971 6.0e-08 61.6 105 40.0
QL10p025510 Quercus lobata HOM05D001186 ORTHO05D000971 6.0e-08 61.6 100 41.0
Sed0010828 Sechium edule HOM05D001186 ORTHO05D000971 6.0e-08 61.6 124 40.3
Dinv28111 Davidia involucrata HOM05D001186 ORTHO05D000971 1.0e-07 60.8 96 42.7
Sed0028138 Sechium edule HOM05D001186 ORTHO05D000971 1.0e-07 60.8 59 47.5
FAN04G0269 Fragaria x ananassa HOM05D001186 ORTHO05D000971 1.3e-07 60.5 84 50.0
Lalb_Chr05g0222471 Lupinus albus HOM05D001186 ORTHO05D000971 1.3e-07 60.5 132 37.1
CsaV3_6G030890 Cucumis sativus L. HOM05D001186 ORTHO05D000971 1.8e-07 60.1 51 56.9
Migut.L01057 Erythranthe guttata HOM05D001186 ORTHO05D000971 1.8e-07 60.1 69 50.7
Thhalv10022101m.g Eutrema salsugineum HOM05D001186 ORTHO05D000971 1.8e-07 60.1 64 50.0
FAN18G1152 Fragaria x ananassa HOM05D001186 ORTHO05D000971 1.8e-07 60.1 93 46.2
Gorai.009G347500 Gossypium raimondii HOM05D001186 ORTHO05D000971 1.8e-07 60.1 97 47.4
Hma1.2p1_0653F.1_g196240 Hydrangea macrophylla HOM05D001186 ORTHO05D000971 1.8e-07 60.1 89 48.3
Ciclev10023693m.g Citrus clementina HOM05D001186 ORTHO05D000971 2.3e-07 59.7 62 51.6
Duzib268G0437 Durio zibethinus HOM05D001186 ORTHO05D000971 2.3e-07 59.7 88 42.0
FAN18G4498 Fragaria x ananassa HOM05D001186 ORTHO05D000971 2.3e-07 59.7 94 45.7
Lj2g0018313 Lotus japonicus HOM05D001186 ORTHO05D000971 2.3e-07 59.7 62 46.8
SalBow8G5321 Salvia bowleyana HOM05D001186 ORTHO05D000971 2.3e-07 59.7 59 54.2
Sp3g16470 Schrenkiella parvula HOM05D001186 ORTHO05D000971 2.3e-07 59.7 65 49.2
THA.LOC104806066 Tarenaya hassleriana HOM05D001186 ORTHO05D000971 2.3e-07 59.7 62 48.4
Gohir.A08G093800 Gossypium hirsutum HOM05D001186 ORTHO05D000971 3.0e-07 59.3 119 35.3
Psat1g034720 Pisum sativum HOM05D001186 ORTHO05D000971 3.0e-07 59.3 132 39.4
Sabra15G0039100 Salix brachista HOM05D001186 ORTHO05D000971 3.0e-07 59.3 74 45.9
Atru.chr11.114 Acer truncatum HOM05D001186 ORTHO05D000971 3.9e-07 58.9 68 57.4
Dinv15684 Davidia involucrata HOM05D012236 ORTHO05D001602 3.9e-07 58.9 97 41.2
TPR.G15166 Trifolium pratense HOM05D001186 ORTHO05D000971 3.9e-07 58.9 114 41.2
Gorai.004G112000 Gossypium raimondii HOM05D001186 ORTHO05D000971 5.1e-07 58.5 94 38.3
Lj2g0004597 Lotus japonicus HOM05D001186 ORTHO05D000971 5.1e-07 58.5 41 63.4
Lalb_Chr16g0387891 Lupinus albus HOM05D001186 ORTHO05D000971 5.1e-07 58.5 112 40.2
Oeu001004.1 Olea europaea HOM05D001186 ORTHO05D000971 5.1e-07 58.5 67 50.7
Peaxi162Scf00015g00106 Petunia axillaris HOM05D001186 ORTHO05D000971 5.1e-07 58.5 41 63.4
CiPaw.16G016300 Carya illinoinensis HOM05D001186 ORTHO05D000971 6.7e-07 58.2 67 50.7
Gohir.D05G323700 Gossypium hirsutum HOM05D001186 ORTHO05D000971 6.7e-07 58.2 70 54.3
Nn3g17865 Nelumbo nucifera HOM05D001186 ORTHO05D000971 6.7e-07 58.2 111 43.2
Rhsim03G0008700 Rhododendron simsii HOM05D001186 ORTHO05D000971 6.7e-07 58.2 97 43.3
Ca_25487_v3 Cicer arietinum L. HOM05D001186 ORTHO05D000971 8.7e-07 57.8 109 36.7
Haze_18687 Corylus avellana HOM05D001186 ORTHO05D000971 8.7e-07 57.8 104 38.5
Gohir.D08G105100 Gossypium hirsutum HOM05D001186 ORTHO05D000971 8.7e-07 57.8 94 38.3
Nn4g23866 Nelumbo nucifera HOM05D001186 ORTHO05D000971 8.7e-07 57.8 84 53.6
TWI31G0680 Tripterygium wilfordii HOM05D001186 ORTHO05D000971 8.7e-07 57.8 73 43.8
arahy.Tifrunner.gnm1.ann1.MZ5XB8 Arachis hypogaea HOM05D001186 ORTHO05D000971 1.1e-06 57.4 48 58.3
DCAR_023208 Daucus carota HOM05D001186 ORTHO05D000971 1.1e-06 57.4 72 45.8
Eucgr.G02312 Eucalyptus grandis HOM05D001186 ORTHO05D000971 1.1e-06 57.4 53 56.6
Hma1.2p1_0061F.1_g033760 Hydrangea macrophylla HOM05D001186 ORTHO05D000971 1.1e-06 57.4 113 41.6
HPP92_003212 Vanilla planifolia HOM05D001186 ORTHO05D000971 1.1e-06 57.4 69 47.8
Prupe.5G222000 Prunus persica HOM05D001186 ORTHO05D000971 1.5e-06 57.0 40 65.0
Sabra12G0039700 Salix brachista HOM05D001186 ORTHO05D000971 1.5e-06 57.0 90 40.0
CSS0012233 Camellia sinensis var. sinensis HOM05D001186 ORTHO05D000971 1.9e-06 56.6 72 56.9
ClCG05G022640 Citrullus lanatus HOM05D001186 ORTHO05D000971 1.9e-06 56.6 48 56.2
Lalb_Chr21g0308871 Lupinus albus HOM05D001186 ORTHO05D000971 1.9e-06 56.6 68 42.6
Sed0003786 Sechium edule HOM05D001186 ORTHO05D000971 1.9e-06 56.6 113 39.8
VMungo1309G1275 Vigna mungo HOM05D001186 ORTHO05D000971 1.9e-06 56.6 58 53.4
CANSAT01G1945 Cannabis sativa HOM05D001186 ORTHO05D000971 2.5e-06 56.2 57 52.6
Glyma.08G041900 Glycine max HOM05D001186 ORTHO05D000971 2.5e-06 56.2 52 53.8
Medtr1g028920 Medicago truncatula HOM05D001186 ORTHO05D000971 2.5e-06 56.2 50 58.0
QL01p041163 Quercus lobata HOM05D001186 ORTHO05D000971 2.5e-06 56.2 102 39.2
QL02p024757 Quercus lobata HOM05D001186 ORTHO05D000971 2.5e-06 56.2 59 54.2
Sed0025511 Sechium edule HOM05D001186 ORTHO05D000971 2.5e-06 56.2 49 59.2
arahy.Tifrunner.gnm1.ann1.407XUT Arachis hypogaea HOM05D001186 ORTHO05D000971 3.3e-06 55.8 51 68.6
arahy.Tifrunner.gnm1.ann1.6A166J Arachis hypogaea HOM05D001186 ORTHO05D000971 3.3e-06 55.8 51 68.6
Duzib084G0272 Durio zibethinus HOM05D001186 ORTHO05D000971 3.3e-06 55.8 100 36.0
Lalb_Chr06g0166031 Lupinus albus HOM05D001186 ORTHO05D000971 3.3e-06 55.8 60 45.0
Pp3c5_24370 Physcomitrium patens HOM05D001186 ORTHO05D000971 3.3e-06 55.8 82 41.5
TWI81G0318 Tripterygium wilfordii HOM05D001186 ORTHO05D000971 3.3e-06 55.8 34 70.6
VMungo0464G1252 Vigna mungo HOM05D001186 ORTHO05D000971 3.3e-06 55.8 120 34.2
Glyma.10G273300 Glycine max HOM05D001186 ORTHO05D000971 4.3e-06 55.5 56 48.2
Phvul.008G159700 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 4.3e-06 55.5 73 47.9
QL01p041179 Quercus lobata HOM05D001186 ORTHO05D000971 4.3e-06 55.5 74 44.6
ClCG08G006550 Citrullus lanatus HOM05D001186 ORTHO05D000971 5.6e-06 55.1 62 51.6
COL.COLO4_32831 Corchorus olitorius HOM05D001186 ORTHO05D000971 5.6e-06 55.1 100 45.0
CsaV3_5G034400 Cucumis sativus L. HOM05D001186 ORTHO05D000971 5.6e-06 55.1 84 38.1
DCAR_026737 Daucus carota HOM05D001186 ORTHO05D000971 5.6e-06 55.1 63 49.2
Lj1g0004766 Lotus japonicus HOM05D001186 ORTHO05D000971 5.6e-06 55.1 59 50.8
Phvul.009G136500 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 5.6e-06 55.1 58 51.7
TPR.G33348 Trifolium pratense HOM05D000033 ORTHO05D001999 5.6e-06 55.1 61 50.8
HPP92_000062 Vanilla planifolia HOM05D001186 ORTHO05D000971 5.6e-06 55.1 52 55.8
EL10Ac5g11455 Beta vulgaris HOM05D001186 ORTHO05D000971 7.4e-06 54.7 32 75.0
CiPaw.15G086400 Carya illinoinensis HOM05D001186 ORTHO05D000971 7.4e-06 54.7 102 40.2
Medtr1g028910 Medicago truncatula HOM05D001186 ORTHO05D000971 7.4e-06 54.7 91 41.8
Phvul.007G028200 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 7.4e-06 54.7 64 42.2
Pp3c5_24450 Physcomitrium patens HOM05D001186 ORTHO05D000971 7.4e-06 54.7 74 40.5
Potri.012G055900 Populus trichocarpa HOM05D001186 ORTHO05D000971 7.4e-06 54.7 45 57.8
PGSC0003DMG400005637 Solanum tuberosum HOM05D001186 ORTHO05D000971 7.4e-06 54.7 63 54.0
HPP92_004813 Vanilla planifolia HOM05D001186 ORTHO05D000971 7.4e-06 54.7 145 31.0
CSS0032299 Camellia sinensis var. sinensis HOM05D001186 ORTHO05D000971 9.6e-06 54.3 90 38.9
CAN.G423.13 Capsicum annuum HOM05D001926 ORTHO05D000971 9.6e-06 54.3 47 53.2
MELO3C017312.2 Cucumis melo HOM05D001186 ORTHO05D000971 9.6e-06 54.3 115 34.8
CsaV3_1G003880 Cucumis sativus L. HOM05D001406 ORTHO05D002467 9.6e-06 54.3 34 70.6
Glyma.06G124400 Glycine max HOM05D001186 ORTHO05D000971 9.6e-06 54.3 59 50.8
VMungo1215G0327 Vigna mungo HOM05D001186 ORTHO05D000971 9.6e-06 54.3 97 33.0


User provided reference genes

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