Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 1.1e-178 629.8 316 100.0
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 1.6e-164 582.8 316 93.0
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 1.7e-161 572.8 316 90.2
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 2.2e-161 572.4 316 90.5
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 4.1e-160 568.2 315 89.5
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 2.9e-158 562.0 316 88.3
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 5.5e-157 557.8 316 88.6
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 9.4e-157 557.0 316 88.0
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 2.1e-156 555.8 308 89.6
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 4.7e-156 554.7 308 90.3
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 5.3e-152 541.2 316 85.4
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 1.2e-151 540.0 316 85.1
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 1.0e-150 537.0 302 89.1
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 7.2e-141 504.2 316 79.1
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 2.1e-140 502.7 316 79.1
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 6.8e-139 497.7 319 78.1
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 8.8e-139 497.3 317 77.9
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 1.2e-138 496.9 305 81.0
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 2.6e-138 495.7 316 77.5
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 3.4e-138 495.4 317 79.2
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 4.4e-138 495.0 300 81.0
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.3e-137 493.4 316 77.8
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 1.3e-137 493.4 316 76.6
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 3.7e-137 491.9 328 77.1
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 4.8e-137 491.5 300 80.3
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 4.8e-137 491.5 317 77.3
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 4.8e-137 491.5 316 78.5
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 1.4e-136 490.0 316 78.5
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 3.1e-136 488.8 317 77.9
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 3.1e-136 488.8 317 77.3
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.6e-135 486.5 316 76.6
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.6e-135 486.5 316 76.6
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 4.5e-135 485.0 316 75.3
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 5.9e-135 484.6 316 77.2
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 1.0e-134 483.8 308 78.2
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 1.3e-134 483.4 317 75.1
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 2.2e-134 482.6 316 75.9
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 2.9e-134 482.3 308 77.6
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 6.5e-134 481.1 317 75.4
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 6.5e-134 481.1 317 75.4
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 1.1e-133 480.3 317 74.4
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 1.9e-133 479.6 325 74.8
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 3.2e-133 478.8 296 80.7
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 4.2e-133 478.4 317 75.1
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 7.2e-133 477.6 300 77.0
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 9.4e-133 477.2 317 75.4
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 2.7e-132 475.7 316 73.4
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 3.6e-132 475.3 317 75.1
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.8e-131 473.0 317 73.8
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 2.3e-131 472.6 300 77.3
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 3.0e-131 472.2 319 74.3
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 5.2e-131 471.5 327 72.2
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 6.8e-131 471.1 317 74.8
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 8.8e-131 470.7 313 74.1
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 1.2e-130 470.3 319 73.4
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 1.2e-130 470.3 316 73.4
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.6e-130 469.2 307 73.9
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 3.4e-130 468.8 282 82.3
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 3.4e-130 468.8 337 70.0
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 3.4e-130 468.8 283 82.0
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 4.4e-130 468.4 314 74.5
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 4.4e-130 468.4 317 73.5
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 7.5e-130 467.6 300 76.0
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 1.3e-129 466.8 342 69.3
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 1.7e-129 466.5 283 81.3
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 1.7e-129 466.5 311 74.9
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 1.1e-128 463.8 315 71.1
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 2.4e-128 462.6 350 68.9
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 3.1e-128 462.2 307 73.3
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 7.0e-128 461.1 304 73.7
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 7.0e-128 461.1 303 74.9
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 3.5e-127 458.8 303 74.6
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 5.9e-127 458.0 323 72.1
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 1.7e-126 456.4 300 73.3
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 8.6e-126 454.1 316 72.8
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 9.5e-125 450.7 311 71.7
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 1.2e-124 450.3 316 71.5
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 1.2e-124 450.3 368 65.5
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 2.3e-123 446.0 282 77.7
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 2.3e-123 446.0 300 71.3
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 4.0e-123 445.3 316 71.5
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 8.9e-123 444.1 299 71.6
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 2.0e-122 443.0 300 71.0
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 8.3e-121 437.6 298 74.8
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 1.4e-120 436.8 300 70.0
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 3.2e-120 435.6 300 70.0
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 7.0e-120 434.5 305 70.2
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 7.0e-120 434.5 300 70.0
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 1.2e-119 433.7 290 74.8
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 7.8e-119 431.0 306 69.3
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 7.8e-119 431.0 306 69.3
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 1.0e-118 430.6 306 69.0
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 1.7e-118 429.9 306 69.3
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 6.6e-118 427.9 305 68.5
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 8.6e-118 427.6 299 69.2
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 1.1e-117 427.2 306 68.6
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 4.7e-116 421.8 300 68.3
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 4.7e-116 421.8 286 74.1
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 1.0e-115 420.6 300 68.3
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 1.4e-115 420.2 299 68.2
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 1.8e-115 419.9 301 65.1
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 5.2e-115 418.3 345 62.9
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 7.5e-114 414.5 306 67.6
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 1.3e-110 403.7 250 80.8
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 6.6e-110 401.4 250 79.2
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 1.8e-107 393.3 300 67.0
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 1.5e-106 390.2 345 61.4
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 1.3e-105 387.1 251 76.5
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.1e-104 384.0 305 66.6
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 2.4e-104 382.9 316 63.0
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 3.2e-104 382.5 250 75.6
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 2.8e-100 369.4 302 58.9
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 8.3e-97 357.8 259 70.3
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 4.0e-91 339.0 318 60.4
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 2.0e-90 336.7 208 82.2
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 1.7e-86 323.6 230 69.6
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 1.2e-82 310.8 235 68.9
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 1.7e-78 297.0 222 69.8
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 9.0e-75 284.6 333 47.7
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 8.4e-73 278.1 190 73.7
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.4e-72 276.6 186 72.0
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 5.3e-59 232.3 303 43.9
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.6e-55 220.7 317 42.6
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 4.3e-53 212.6 174 67.8
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 1.4e-51 207.6 316 40.2
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.5e-50 204.1 166 65.1
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 5.9e-50 202.2 142 72.5
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 2.9e-49 199.9 170 60.6
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 4.2e-40 169.5 121 67.8
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 2.7e-39 166.8 112 75.0
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 1.5e-34 151.0 100 75.0
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 9.4e-32 141.7 91 76.9
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 1.2e-26 124.8 79 77.2
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 8.5e-25 118.6 175 43.4
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 9.4e-24 115.2 85 68.2
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 7.5e-21 105.5 77 70.1
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 1.3e-20 104.8 65 76.9
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 2.8e-12 77.0 87 48.3
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 5.4e-11 72.8 55 67.3
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-10 71.6 53 67.9
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 1.9e-08 64.3 40 72.5


User provided reference genes

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