Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 5.1e-92 341.3 198 100.0
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 5.8e-72 274.6 199 75.4
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.7e-71 273.1 198 74.7
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 6.4e-71 271.2 198 74.2
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 6.4e-71 271.2 173 83.2
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 2.4e-70 269.2 198 72.7
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 4.2e-70 268.5 198 71.7
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 4.2e-70 268.5 198 71.7
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 3.9e-68 261.9 173 78.0
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 7.4e-67 257.7 171 76.6
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 7.4e-67 257.7 198 69.7
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 9.6e-67 257.3 168 78.6
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 2.1e-66 256.1 172 74.4
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 3.7e-66 255.4 173 77.5
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 6.2e-66 254.6 173 74.0
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 1.1e-65 253.8 191 69.6
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 1.4e-65 253.4 176 75.6
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.8e-65 253.1 198 68.7
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 3.1e-65 252.3 169 75.1
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 5.3e-65 251.5 193 67.9
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 6.9e-65 251.1 199 68.3
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 9.0e-65 250.8 173 75.1
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 1.2e-64 250.4 196 66.8
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.2e-64 250.4 173 74.6
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 1.2e-64 250.4 174 74.7
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 1.5e-64 250.0 171 73.7
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 2.0e-64 249.6 170 72.9
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 3.4e-64 248.8 169 72.8
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 3.4e-64 248.8 173 72.8
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 5.8e-64 248.1 180 72.2
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 7.6e-64 247.7 169 73.4
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 7.6e-64 247.7 199 67.8
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.0e-63 247.3 173 73.4
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.0e-63 247.3 168 73.2
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.3e-63 246.9 176 73.3
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 1.7e-63 246.5 169 71.0
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 2.9e-63 245.7 171 73.7
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 2.9e-63 245.7 173 74.0
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 2.9e-63 245.7 198 65.7
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 4.9e-63 245.0 198 68.2
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 4.9e-63 245.0 169 71.6
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 4.9e-63 245.0 173 71.1
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 4.9e-63 245.0 173 72.3
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 6.5e-63 244.6 168 71.4
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.4e-62 243.4 171 71.9
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 1.4e-62 243.4 171 71.3
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 2.5e-62 242.7 179 69.8
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 3.2e-62 242.3 173 71.7
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 3.2e-62 242.3 198 64.1
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 4.2e-62 241.9 170 72.4
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 7.1e-62 241.1 178 69.1
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 7.1e-62 241.1 178 69.1
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.2e-61 240.4 167 71.9
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.2e-61 240.4 173 69.4
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 1.6e-61 240.0 171 71.9
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 1.6e-61 240.0 171 71.9
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 2.1e-61 239.6 171 71.9
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 2.1e-61 239.6 171 71.9
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 2.7e-61 239.2 173 69.9
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.7e-61 239.2 198 65.2
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 3.5e-61 238.8 198 66.7
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 3.5e-61 238.8 168 70.8
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 4.6e-61 238.4 157 76.4
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 7.9e-61 237.7 171 68.4
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.0e-60 235.7 170 69.4
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 5.1e-60 235.0 179 68.7
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 5.1e-60 235.0 179 68.7
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 6.7e-60 234.6 170 66.5
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 2.5e-59 232.6 152 74.3
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 4.3e-59 231.9 152 74.3
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 4.3e-59 231.9 173 70.5
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 5.7e-59 231.5 201 61.2
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 7.4e-59 231.1 170 68.8
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 7.4e-59 231.1 195 64.1
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 7.4e-59 231.1 154 75.3
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 7.4e-59 231.1 154 75.3
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 9.6e-59 230.7 170 69.4
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 1.3e-58 230.3 171 65.5
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 1.3e-58 230.3 150 75.3
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 1.6e-58 229.9 170 65.9
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 2.8e-58 229.2 177 67.8
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 2.8e-58 229.2 173 69.9
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 2.8e-58 229.2 195 64.1
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 3.7e-58 228.8 170 69.4
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 4.8e-58 228.4 173 67.1
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 4.8e-58 228.4 170 72.4
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.4e-57 226.9 174 65.5
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.8e-57 226.5 175 66.9
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 3.1e-57 225.7 170 67.1
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 3.1e-57 225.7 176 64.2
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.3e-57 224.9 160 71.2
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 6.9e-57 224.6 170 67.6
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.5e-56 223.4 200 58.5
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 1.5e-56 223.4 171 67.3
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.5e-56 223.4 181 64.1
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 2.6e-56 222.6 172 65.7
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 5.9e-56 221.5 170 65.3
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 5.9e-56 221.5 170 65.3
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.2e-55 219.5 173 66.5
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 6.5e-55 218.0 200 61.0
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 6.5e-55 218.0 173 66.5
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 8.4e-55 217.6 194 63.9
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 1.4e-54 216.9 171 64.3
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.9e-54 216.5 173 65.9
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.5e-54 216.1 166 65.7
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 4.2e-54 215.3 173 65.9
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 7.2e-54 214.5 206 56.3
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 9.3e-54 214.2 171 64.9
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.6e-53 213.4 173 63.6
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.6e-53 213.4 197 59.4
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 2.1e-53 213.0 170 66.5
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 7.9e-53 211.1 171 66.1
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 1.0e-52 210.7 169 66.3
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 8.7e-52 207.6 172 60.5
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.5e-51 206.1 154 69.5
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 3.3e-51 205.7 167 62.9
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 5.7e-51 204.9 155 68.4
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.6e-50 203.4 187 58.3
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.5e-48 196.8 142 66.9
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 3.4e-48 195.7 171 63.7
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 1.3e-47 193.7 164 64.6
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 2.2e-47 193.0 173 59.0
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 1.5e-43 180.3 172 57.6
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 9.7e-43 177.6 164 54.9
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 1.1e-41 174.1 150 56.7
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 3.1e-41 172.6 222 46.4
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.1e-41 172.2 165 53.3
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 1.2e-40 170.6 130 66.9
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 1.1e-35 154.1 167 49.1
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 2.2e-34 149.8 87 86.2
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 3.8e-31 139.0 102 67.6
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 5.0e-31 138.7 112 65.2
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 6.5e-31 138.3 86 76.7
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.9e-30 136.7 127 56.7
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.9e-30 136.7 91 76.9
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 4.7e-29 132.1 172 42.4
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.8e-28 130.2 165 42.4
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 2.0e-27 126.7 97 67.0
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 5.7e-27 125.2 139 48.9
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 5.7e-27 125.2 165 44.2
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.2e-26 123.2 101 63.4
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.2e-26 123.2 86 68.6
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 1.8e-25 120.2 75 77.3
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 1.7e-23 113.6 75 73.3
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 3.8e-23 112.5 85 69.4
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 7.5e-19 98.2 141 44.7
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 5.4e-17 92.0 82 61.0
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 3.5e-16 89.4 72 62.5
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 1.6e-13 80.5 63 66.7
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 3.6e-13 79.3 136 33.1
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 3.0e-12 76.3 76 55.3
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 8.3e-10 68.2 49 73.5
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 9.2e-09 64.7 41 78.0
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 7.7e-08 61.6 98 38.8
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 1.3e-07 60.8 41 63.4
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 2.3e-07 60.1 41 73.2
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 8.6e-07 58.2 62 54.8
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 5.6e-06 55.5 62 53.2


User provided reference genes

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