Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 1.5e-43 179.5 113 100.0
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 2.5e-27 125.6 113 72.6
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 3.3e-27 125.2 98 77.6
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 5.6e-27 124.4 98 76.5
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 1.8e-25 119.4 122 66.4
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 3.0e-25 118.6 117 65.8
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 8.9e-25 117.1 116 65.5
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 2.2e-23 112.5 117 66.7
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 2.2e-23 112.5 117 66.7
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 2.9e-23 112.1 117 64.1
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 3.7e-23 111.7 116 62.9
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 1.8e-22 109.4 118 61.9
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 5.4e-22 107.8 100 74.0
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 2.0e-21 105.9 100 72.0
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 2.0e-21 105.9 100 72.0
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 2.0e-21 105.9 100 72.0
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 2.0e-21 105.9 100 72.0
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 3.5e-21 105.1 103 68.9
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 3.5e-21 105.1 97 70.1
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 3.5e-21 105.1 100 71.0
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 4.6e-21 104.8 103 68.0
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 5.9e-21 104.4 102 63.7
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 2.3e-20 102.4 97 62.9
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 3.0e-20 102.1 97 63.9
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 5.0e-20 101.3 100 60.0
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 6.6e-20 100.9 103 64.1
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 8.6e-20 100.5 97 63.9
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 8.6e-20 100.5 128 53.1
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 1.1e-19 100.1 102 61.8
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 3.3e-19 98.6 118 59.3
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 5.6e-19 97.8 94 64.9
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 1.6e-18 96.3 100 61.0
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 1.6e-18 96.3 96 67.7
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 2.1e-18 95.9 101 60.4
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 2.1e-18 95.9 112 58.9
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 2.8e-18 95.5 107 60.7
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 2.8e-18 95.5 108 61.1
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 2.8e-18 95.5 105 61.0
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 3.6e-18 95.1 124 56.5
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 4.7e-18 94.7 107 58.9
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 1.1e-17 93.6 108 61.1
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 1.8e-17 92.8 123 53.7
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 1.8e-17 92.8 124 55.6
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 3.1e-17 92.0 102 62.7
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 4.0e-17 91.7 127 55.1
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 4.0e-17 91.7 122 52.5
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 5.2e-17 91.3 127 55.1
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 5.2e-17 91.3 104 59.6
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 8.9e-17 90.5 98 59.2
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 1.5e-16 89.7 99 59.6
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 1.5e-16 89.7 126 53.2
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 2.0e-16 89.4 127 54.3
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 3.4e-16 88.6 110 54.5
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 4.4e-16 88.2 101 59.4
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 7.5e-16 87.4 105 55.2
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 2.9e-15 85.5 100 56.0
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 2.9e-15 85.5 120 55.0
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 3.7e-15 85.1 111 50.5
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 4.9e-15 84.7 95 55.8
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 4.9e-15 84.7 110 55.5
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 6.4e-15 84.3 104 60.6
Nn1g05854 Nelumbo nucifera HOM05D006797 ORTHO05D007696 8.3e-15 84.0 101 58.4
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 2.4e-14 82.4 97 57.7
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 4.1e-14 81.6 119 52.1
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 5.4e-14 81.3 119 52.1
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 5.4e-14 81.3 97 56.7
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 7.0e-14 80.9 111 56.8
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 1.6e-13 79.7 105 52.4
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 2.0e-13 79.3 119 51.3
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 2.0e-13 79.3 119 51.3
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 3.5e-13 78.6 99 59.6
MBI18_g20922_MAGBIO Magnolia biondii HOM05D006797 ORTHO05D007696 3.5e-13 78.6 97 56.7
HPP92_013198 Vanilla planifolia HOM05D006797 ORTHO05D007696 3.5e-13 78.6 120 50.0
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 3.5e-13 78.6 94 57.4
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 7.8e-13 77.4 107 48.6
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 1.0e-12 77.0 105 56.2
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 1.3e-12 76.6 100 52.0
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 1.7e-12 76.3 111 55.0
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 3.0e-12 75.5 99 53.5
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 3.0e-12 75.5 100 51.0
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 8.6e-12 73.9 71 67.6
CARHR030370 Cardamine hirsuta HOM05D006797 ORTHO05D007696 4.3e-11 71.6 106 56.6
Haze_24216 Corylus avellana HOM05D006797 ORTHO05D007696 1.2e-10 70.1 116 45.7
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 2.1e-10 69.3 59 71.2
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 3.6e-10 68.6 107 51.4
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 3.6e-10 68.6 103 52.4
Haze_15747 Corylus avellana HOM05D006797 ORTHO05D007696 3.6e-10 68.6 45 84.4
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 6.2e-10 67.8 107 57.0
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 1.1e-09 67.0 102 55.9
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 1.1e-09 67.0 102 55.9
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 1.4e-09 66.6 98 56.1
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 1.4e-09 66.6 98 56.1
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 1.8e-09 66.2 105 53.3
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 1.8e-09 66.2 104 55.8
Haze_05201 Corylus avellana HOM05D000001 ORTHO05D010268 1.8e-09 66.2 60 68.3
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 2.3e-09 65.9 100 50.0
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 3.1e-09 65.5 105 56.2
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 3.1e-09 65.5 105 52.4
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 3.1e-09 65.5 105 56.2
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 3.1e-09 65.5 105 53.3
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 4.0e-09 65.1 104 55.8
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 6.8e-09 64.3 105 51.4
vmacro03563 Vaccinium macrocarpon HOM05D006797 ORTHO05D007696 8.9e-09 63.9 104 49.0
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 1.5e-08 63.2 99 52.5
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 2.0e-08 62.8 102 54.9
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 2.6e-08 62.4 105 49.5
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 2.6e-08 62.4 105 49.5
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 4.4e-08 61.6 106 51.9
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 5.8e-08 61.2 51 72.5
BraA09t39054Z Brassica rapa HOM05D006797 ORTHO05D007696 1.3e-07 60.1 108 50.9
Hma1.2p1_0747F.1_g212490 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 2.9e-07 58.9 65 64.6
Oeu008734.1 Olea europaea HOM05D016541 ORTHO05D007696 3.7e-07 58.5 60 63.3
Mapoly0051s0054 Marchantia polymorpha HOM05D006797 ORTHO05D007696 6.4e-07 57.8 48 64.6
BolC5t31749H Brassica oleracea HOM05D006797 ORTHO05D007696 1.1e-06 57.0 110 48.2
PGSC0003DMG400034320 Solanum tuberosum HOM05D001388 ORTHO05D001234 3.2e-06 55.5 66 59.1
Pp3c24_14860 Physcomitrium patens HOM05D006797 ORTHO05D007696 7.1e-06 54.3 69 52.2


User provided reference genes

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