Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 2.5e-165 585.5 324 100.0
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.1e-155 553.5 324 86.4
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 7.1e-152 540.8 324 85.2
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 9.3e-152 540.4 324 88.9
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 7.9e-151 537.3 324 84.3
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 1.3e-150 536.6 324 84.6
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 1.3e-148 530.0 324 83.0
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 4.5e-146 521.5 324 82.1
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 8.4e-145 517.3 323 84.8
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 1.4e-144 516.5 323 79.3
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 9.3e-144 513.8 323 79.6
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 2.7e-143 512.3 323 84.2
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 1.1e-139 500.4 323 77.4
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 1.1e-133 480.3 322 73.9
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 3.3e-133 478.8 321 76.9
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 1.3e-132 476.9 321 76.3
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 2.2e-132 476.1 321 77.3
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 5.3e-131 471.5 325 76.0
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 1.5e-130 469.9 324 75.9
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 3.4e-130 468.8 325 75.1
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 8.5e-129 464.2 324 71.0
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 1.4e-128 463.4 324 72.8
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 3.2e-128 462.2 322 76.7
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 3.2e-128 462.2 324 79.9
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 4.2e-128 461.8 322 71.4
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 5.5e-128 461.5 321 74.5
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 7.2e-128 461.1 324 79.6
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 1.2e-127 460.3 321 70.7
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 2.1e-127 459.5 327 79.2
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 2.1e-127 459.5 321 74.8
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 3.6e-127 458.8 322 76.4
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 7.9e-127 457.6 322 76.1
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 2.3e-126 456.1 321 73.5
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 2.3e-126 456.1 326 75.8
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 1.5e-125 453.4 324 71.3
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 4.4e-125 451.8 324 74.4
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 7.4e-125 451.1 324 70.7
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 9.7e-125 450.7 324 70.7
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 9.7e-125 450.7 328 71.3
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 2.8e-124 449.1 323 71.5
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 2.8e-124 449.1 323 69.0
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 8.2e-124 447.6 326 71.8
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 1.1e-123 447.2 324 69.8
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 1.1e-123 447.2 328 73.5
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 1.4e-123 446.8 324 69.8
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 1.8e-123 446.4 324 68.8
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 2.0e-122 443.0 326 69.6
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 2.0e-122 443.0 324 70.4
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 3.5e-122 442.2 324 67.9
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 3.5e-122 442.2 322 67.7
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 4.5e-122 441.8 323 68.7
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 5.9e-122 441.4 267 79.4
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 5.9e-122 441.4 326 68.4
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 7.7e-122 441.0 326 71.8
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 1.0e-121 440.7 321 68.2
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 1.7e-121 439.9 322 68.0
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 1.7e-121 439.9 326 73.9
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 2.2e-121 439.5 322 70.2
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 2.2e-121 439.5 331 68.6
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 2.9e-121 439.1 326 72.4
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 3.8e-121 438.7 351 67.0
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 3.8e-121 438.7 321 68.5
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 5.0e-121 438.3 323 71.2
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 6.5e-121 438.0 323 71.2
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 8.5e-121 437.6 322 71.1
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 8.5e-121 437.6 325 69.5
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 8.5e-121 437.6 362 63.3
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 1.1e-120 437.2 325 70.8
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 1.1e-120 437.2 325 70.8
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 1.4e-120 436.8 326 68.1
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 3.2e-120 435.6 324 72.8
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 5.5e-120 434.9 322 66.5
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 5.5e-120 434.9 324 71.9
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 1.6e-119 433.3 322 66.5
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 1.6e-119 433.3 325 73.2
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 2.1e-119 433.0 318 69.5
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 2.7e-119 432.6 324 69.8
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 2.7e-119 432.6 327 69.4
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 4.7e-119 431.8 324 69.4
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 4.7e-119 431.8 324 70.1
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 4.7e-119 431.8 327 71.9
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 6.1e-119 431.4 322 66.5
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.4e-118 430.3 324 69.8
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 3.0e-118 429.1 322 68.0
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 5.2e-118 428.3 324 67.3
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 6.7e-118 427.9 326 68.4
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 8.8e-118 427.6 325 68.0
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 2.0e-117 426.4 326 68.1
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 4.4e-117 425.2 351 65.2
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 2.2e-116 422.9 325 66.2
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 2.2e-116 422.9 326 69.3
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 3.7e-116 422.2 323 70.0
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 4.8e-116 421.8 316 71.5
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 4.1e-115 418.7 316 69.9
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 1.6e-114 416.8 326 66.9
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 5.9e-114 414.8 324 66.4
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.7e-113 413.3 322 64.6
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 2.5e-112 409.5 262 77.1
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 1.5e-109 400.2 260 74.6
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 1.1e-107 394.0 265 73.2
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 3.5e-106 389.0 262 71.8
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 4.5e-106 388.7 499 47.1
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 1.7e-105 386.7 324 63.9
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 5.5e-104 381.7 265 72.5
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 1.2e-101 374.0 290 65.9
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 7.5e-101 371.3 323 60.1
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 7.5e-101 371.3 383 54.0
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 1.2e-95 354.0 185 96.8
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 2.3e-89 333.2 178 93.3
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 4.4e-85 318.9 190 83.7
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 2.2e-84 316.6 263 58.9
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 1.9e-83 313.5 274 57.7
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 9.2e-83 311.2 208 76.0
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 4.3e-80 302.4 178 83.1
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 2.8e-79 299.7 168 87.5
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 4.9e-76 288.9 170 82.9
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.6e-69 266.5 184 73.9
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 2.2e-68 263.5 204 65.2
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 6.0e-66 255.4 184 75.0
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 2.8e-55 219.9 121 89.3
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 5.8e-53 212.2 161 63.4
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 9.6e-48 194.9 132 75.0
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 6.2e-47 192.2 124 72.6
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 5.3e-46 189.1 121 77.7
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.6e-42 176.0 115 75.7
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 5.8e-37 159.1 121 71.1
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 9.3e-35 151.8 155 60.6
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.6e-34 151.0 95 81.1
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 1.6e-23 114.4 75 74.7
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 3.4e-13 80.1 158 35.4
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 8.5e-12 75.5 50 72.0
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 1.9e-11 74.3 80 51.2
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 3.6e-10 70.1 185 27.6
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 2.6e-08 63.9 173 32.9
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 2.6e-08 63.9 139 34.5
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.3e-07 61.6 142 31.0
Cre12.g552600 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 2.8e-07 60.5 153 32.0
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.4e-06 58.2 52 63.5
PRCOL_00003044 Prasinoderma coloniale HOM05D024924 ORTHO05D006483 3.1e-06 57.0 142 31.0


User provided reference genes

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