Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 9.9e-56 219.9 115 100.0
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 4.5e-24 114.8 75 85.3
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 4.2e-22 108.2 71 85.9
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 2.1e-21 105.9 75 78.7
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 2.3e-20 102.4 75 76.0
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 3.9e-20 101.7 77 79.2
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 6.7e-20 100.9 103 64.1
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 4.3e-19 98.2 81 71.6
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 4.3e-19 98.2 81 71.6
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 7.4e-19 97.4 73 75.3
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 2.2e-18 95.9 77 71.4
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 6.3e-18 94.4 75 70.7
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 8.2e-18 94.0 83 63.9
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 8.2e-18 94.0 75 70.7
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.1e-17 93.6 79 64.6
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 2.4e-17 92.4 76 71.1
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 3.1e-17 92.0 75 70.7
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 3.1e-17 92.0 77 71.4
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 5.3e-17 91.3 76 69.7
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 5.3e-17 91.3 76 69.7
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.2e-16 90.1 75 73.3
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.2e-16 90.1 76 68.4
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 2.0e-16 89.4 75 65.3
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.6e-16 89.0 75 66.7
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 2.6e-16 89.0 75 66.7
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 3.4e-16 88.6 76 65.8
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 5.9e-16 87.8 76 68.4
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 5.9e-16 87.8 81 63.0
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 5.9e-16 87.8 87 58.6
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 7.7e-16 87.4 75 65.3
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 1.0e-15 87.0 75 65.3
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 1.0e-15 87.0 75 68.0
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 1.3e-15 86.7 75 64.0
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 2.2e-15 85.9 75 65.3
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 2.9e-15 85.5 75 66.7
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.9e-15 85.5 75 66.7
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.9e-15 85.5 75 66.7
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.9e-15 85.5 75 65.3
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.8e-15 85.1 74 67.6
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 6.5e-15 84.3 76 61.8
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.9e-14 82.8 75 60.0
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 1.9e-14 82.8 80 58.8
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 2.5e-14 82.4 76 61.8
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.5e-14 82.4 80 58.8
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.5e-14 82.4 80 58.8
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 3.2e-14 82.0 76 61.8
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 3.2e-14 82.0 76 61.8
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 4.2e-14 81.6 78 61.5
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 5.5e-14 81.3 75 62.7
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.1e-13 79.3 80 58.8
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 2.1e-13 79.3 80 57.5
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 2.7e-13 79.0 92 55.4
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 3.6e-13 78.6 75 58.7
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 4.6e-13 78.2 98 55.1
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 4.6e-13 78.2 75 61.3
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 7.9e-13 77.4 75 64.0
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 1.0e-12 77.0 76 59.2
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 1.0e-12 77.0 79 62.0
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.4e-12 76.6 76 59.2
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.8e-12 76.3 76 57.9
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 2.3e-12 75.9 75 54.7
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 3.0e-12 75.5 95 52.6
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 3.9e-12 75.1 75 62.7
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 3.9e-12 75.1 70 62.9
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 3.9e-12 75.1 79 63.3
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 3.9e-12 75.1 80 57.5
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 6.7e-12 74.3 95 54.7
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 6.7e-12 74.3 95 51.6
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 8.8e-12 73.9 75 56.0
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.1e-11 73.6 76 59.2
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.1e-11 73.6 78 56.4
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.1e-11 73.6 78 56.4
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 1.1e-11 73.6 80 53.8
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.5e-11 73.2 91 57.1
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 2.5e-11 72.4 75 57.3
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 2.5e-11 72.4 77 55.8
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 3.3e-11 72.0 94 50.0
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 3.3e-11 72.0 77 58.4
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 3.3e-11 72.0 77 58.4
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 4.3e-11 71.6 80 56.2
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 7.4e-11 70.9 75 54.7
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 9.7e-11 70.5 79 51.9
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 9.7e-11 70.5 79 51.9
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 9.7e-11 70.5 74 59.5
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 1.3e-10 70.1 83 53.0
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 1.3e-10 70.1 82 53.7
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 1.3e-10 70.1 87 54.0
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.7e-10 69.7 75 53.3
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 1.7e-10 69.7 77 54.5
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.8e-10 68.9 75 54.7
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.8e-10 68.9 79 57.0
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 2.8e-10 68.9 78 55.1
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 4.8e-10 68.2 76 53.9
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 6.3e-10 67.8 75 56.0
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 6.3e-10 67.8 82 53.7
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.1e-09 67.0 75 53.3
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 1.4e-09 66.6 72 54.2
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.4e-09 66.6 79 55.7
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.4e-09 66.6 73 56.2
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.8e-09 66.2 85 54.1
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 2.4e-09 65.9 76 53.9
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 2.4e-09 65.9 75 56.0
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 2.4e-09 65.9 75 53.3
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 3.1e-09 65.5 69 55.1
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 3.1e-09 65.5 80 50.0
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 3.1e-09 65.5 77 53.2
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 4.1e-09 65.1 84 52.4
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.3e-09 64.7 78 51.3
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 5.3e-09 64.7 73 52.1
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 5.3e-09 64.7 80 50.0
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 6.9e-09 64.3 75 52.0
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 6.9e-09 64.3 86 51.2
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 6.9e-09 64.3 80 50.0
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 9.1e-09 63.9 75 50.7
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 9.1e-09 63.9 79 54.4
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 9.1e-09 63.9 82 51.2
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 9.1e-09 63.9 77 53.2
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 9.1e-09 63.9 74 52.7
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 1.2e-08 63.5 55 65.5
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 1.2e-08 63.5 81 46.9
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.2e-08 63.5 87 50.6
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.5e-08 63.2 74 50.0
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.5e-08 63.2 86 51.2
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 2.0e-08 62.8 74 52.7
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 2.0e-08 62.8 81 50.6
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 2.0e-08 62.8 70 52.9
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.0e-08 62.8 86 51.2
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 2.6e-08 62.4 77 53.2
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 3.4e-08 62.0 69 55.1
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.5e-08 61.6 74 48.6
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 5.9e-08 61.2 82 46.3
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 7.7e-08 60.8 74 48.6
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 1.0e-07 60.5 71 52.1
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 1.0e-07 60.5 77 51.9
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 1.0e-07 60.5 74 52.7
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 2.2e-07 59.3 77 48.1
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 3.8e-07 58.5 77 50.6
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 5.0e-07 58.2 78 51.3
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 5.0e-07 58.2 71 50.7
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 5.0e-07 58.2 71 53.5
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.0e-07 58.2 88 48.9
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 8.5e-07 57.4 80 48.8
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 8.5e-07 57.4 72 52.8
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 8.5e-07 57.4 78 52.6
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 8.5e-07 57.4 73 50.7
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 1.1e-06 57.0 74 51.4
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 1.4e-06 56.6 77 49.4
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.4e-06 56.6 77 49.4
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 1.4e-06 56.6 78 52.6
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.4e-06 56.6 75 50.7
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.5e-06 55.8 76 47.4
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 4.2e-06 55.1 77 48.1
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 4.2e-06 55.1 77 48.1
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 4.2e-06 55.1 91 45.1
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 5.5e-06 54.7 78 48.7
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 5.5e-06 54.7 90 45.6
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 7.2e-06 54.3 74 48.6
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 7.2e-06 54.3 71 49.3
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 9.4e-06 53.9 78 47.4


User provided reference genes

Program Settings