Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0013254 Lotus japonicus HOM05D005806 ORTHO05D007119 7.9e-208 727.2 478 100.0
Ca_21476_v3 Cicer arietinum L. HOM05D005806 ORTHO05D007119 6.4e-133 478.4 492 66.5
arahy.Tifrunner.gnm1.ann1.TZ6N57 Arachis hypogaea HOM05D005806 ORTHO05D007119 7.9e-123 444.9 487 61.0
Glyma.07G244900 Glycine max HOM05D005806 ORTHO05D007119 5.1e-122 442.2 431 66.1
VMungo1215G2854 Vigna mungo HOM05D005806 ORTHO05D007119 5.8e-118 428.7 440 61.4
Glyma.17G028900 Glycine max HOM05D005806 ORTHO05D007119 4.9e-117 425.6 457 63.5
Medtr4g120360 Medicago truncatula HOM05D005806 ORTHO05D007119 4.9e-117 425.6 494 60.3
Phvul.003G107800 Phaseolus vulgaris HOM05D005806 ORTHO05D007119 4.3e-113 412.5 440 63.6
Psat4g025560 Pisum sativum HOM05D005806 ORTHO05D007119 2.4e-103 380.2 431 59.6
Lalb_Chr07g0182271 Lupinus albus HOM05D005806 ORTHO05D007119 6.9e-95 352.1 422 58.3
Atru.chr4.2914 Acer truncatum HOM05D005806 ORTHO05D007119 3.4e-94 349.7 474 52.7
QL06p010760 Quercus lobata HOM05D005806 ORTHO05D007119 5.9e-94 349.0 542 51.5
TWI09G1342 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 5.9e-94 349.0 515 49.5
Duzib212G0552 Durio zibethinus HOM05D005806 ORTHO05D007119 1.4e-92 344.4 524 51.3
Manes.15G010100 Manihot esculenta HOM05D005806 ORTHO05D007119 2.5e-92 343.6 458 55.9
Dinv44345 Davidia involucrata HOM05D005806 ORTHO05D007119 4.2e-92 342.8 438 54.8
Cpa.g.sc50.151 Carica papaya HOM05D005806 ORTHO05D007119 7.2e-92 342.0 530 52.1
Thecc.04G290100 Theobroma cacao HOM05D005806 ORTHO05D007119 7.2e-92 342.0 525 52.0
Duzib151G0580 Durio zibethinus HOM05D005806 ORTHO05D007119 1.6e-91 340.9 528 51.3
Ciclev10004804m.g Citrus clementina HOM05D005806 ORTHO05D007119 2.1e-91 340.5 485 52.4
CSS0028282 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.4e-90 337.8 464 54.3
TWI73G0620 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 1.8e-90 337.4 460 53.0
MD16G1163000 Malus domestica HOM05D005806 ORTHO05D007119 2.3e-90 337.0 492 49.8
Gorai.011G193400 Gossypium raimondii HOM05D005806 ORTHO05D007119 1.5e-89 334.3 539 49.0
Haze_01151 Corylus avellana HOM05D005806 ORTHO05D007119 3.3e-89 333.2 474 53.8
Cfa015433 Carpinus fangiana HOM05D005806 ORTHO05D007119 9.7e-89 331.6 546 50.9
Manes.03G199200 Manihot esculenta HOM05D005806 ORTHO05D007119 9.7e-89 331.6 463 54.9
TAR365G0831 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.4e-87 327.8 528 49.6
Ah.13g074780 Amaranthus hybridus HOM05D005806 ORTHO05D007119 2.4e-87 327.0 469 49.5
EL10Ac3g06659 Beta vulgaris HOM05D005806 ORTHO05D007119 3.1e-87 326.6 457 53.0
CSS0004144 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 4.1e-87 326.2 476 53.6
Gohir.D10G172900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 4.1e-87 326.2 541 52.9
ClCG05G006280 Citrullus lanatus HOM05D005806 ORTHO05D007119 5.3e-87 325.9 492 47.2
Prupe.1G130400 Prunus persica HOM05D005806 ORTHO05D007119 5.3e-87 325.9 497 50.3
Aqoxy5G00792 Aquilegia oxysepala HOM05D005806 ORTHO05D007119 6.9e-87 325.5 439 50.1
arahy.Tifrunner.gnm1.ann1.T7VR84 Arachis hypogaea HOM05D005806 ORTHO05D007119 9.1e-87 325.1 288 65.6
Nitab4.5_0012392g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 1.2e-86 324.7 473 49.9
TAR365G0056 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.2e-86 324.7 526 49.4
Nitab4.5_0002215g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 2.0e-86 323.9 473 51.4
FAN12G2548 Fragaria x ananassa HOM05D005806 ORTHO05D007119 5.9e-86 322.4 479 47.2
CiPaw.01G145000 Carya illinoinensis HOM05D005806 ORTHO05D007119 1.3e-85 321.2 472 54.7
FvH4_4g18770 Fragaria vesca HOM05D005806 ORTHO05D007119 1.3e-85 321.2 479 47.0
FAN12G3921 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.3e-85 321.2 479 47.0
CSS0038808 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.7e-85 320.9 476 52.1
Sabra10G0005700 Salix brachista HOM05D005806 ORTHO05D007119 2.9e-85 320.1 496 51.6
AUR62018055 Chenopodium quinoa HOM05D005806 ORTHO05D007119 5.0e-85 319.3 538 45.0
Solyc01g066050.3 Solanum lycopersicum HOM05D005806 ORTHO05D007119 6.5e-85 318.9 562 45.4
COL.COLO4_13808 Corchorus olitorius HOM05D005806 ORTHO05D007119 1.9e-84 317.4 538 47.4
Sopen01g027600 Solanum pennellii HOM05D005806 ORTHO05D007119 1.9e-84 317.4 562 45.0
Sed0007282 Sechium edule HOM05D005806 ORTHO05D007119 9.4e-84 315.1 492 48.8
RcHm_v2.0_Chr4g0423561 Rosa chinensis HOM05D005806 ORTHO05D007119 1.2e-83 314.7 491 50.1
PGSC0003DMG400016813 Solanum tuberosum HOM05D005806 ORTHO05D007119 2.1e-83 313.9 458 48.3
Potri.010G007000 Populus trichocarpa HOM05D005806 ORTHO05D007119 2.3e-82 310.5 486 50.8
Hund20516 Selenicereus undatus HOM05D005806 ORTHO05D007119 3.0e-82 310.1 460 48.9
CARHR092010 Cardamine hirsuta HOM05D005806 ORTHO05D007119 3.9e-82 309.7 459 48.4
FAN07G1609 Fragaria x ananassa HOM05D005806 ORTHO05D007119 8.8e-82 308.5 482 46.1
Eucgr.B01574 Eucalyptus grandis HOM05D005806 ORTHO05D007119 1.5e-81 307.8 539 49.9
Oeu054004.1 Olea europaea HOM05D005806 ORTHO05D007119 1.5e-81 307.8 461 51.2
Lj3A825T23 Lonicera japonica HOM05D005806 ORTHO05D007119 2.6e-81 307.0 468 49.4
DCAR_002485 Daucus carota HOM05D005806 ORTHO05D007119 7.4e-81 305.4 509 45.4
CAN.G14.19 Capsicum annuum HOM05D005806 ORTHO05D007119 9.7e-81 305.1 457 51.9
Gohir.A10G166900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 1.3e-80 304.7 480 54.2
SGA_v2.0_scaffold91G28032 Striga asiatica HOM05D005806 ORTHO05D007119 3.7e-80 303.1 459 46.2
CANSAT78G0145 Cannabis sativa HOM05D005806 ORTHO05D007119 1.4e-79 301.2 487 48.5
Peaxi162Scf00065g01121 Petunia axillaris HOM05D005806 ORTHO05D007119 1.4e-79 301.2 474 49.8
Sp3g15010 Schrenkiella parvula HOM05D005806 ORTHO05D007119 1.4e-79 301.2 476 45.8
Nn4g25745 Nelumbo nucifera HOM05D005806 ORTHO05D007119 1.8e-79 300.8 532 44.7
THA.LOC104802587 Tarenaya hassleriana HOM05D005806 ORTHO05D007119 4.1e-79 299.7 473 48.8
Carub.0003s1647 Capsella rubella HOM05D005806 ORTHO05D007119 7.0e-79 298.9 468 44.9
FAN17G0801 Fragaria x ananassa HOM05D005806 ORTHO05D007119 9.1e-79 298.5 492 44.9
AT3G16760 Arabidopsis thaliana HOM05D005806 ORTHO05D007119 2.0e-78 297.4 451 46.6
Thhalv10020624m.g Eutrema salsugineum HOM05D005806 ORTHO05D007119 3.8e-77 293.1 462 44.8
GSVIVG01035100001 Vitis vinifera HOM05D005806 ORTHO05D007119 6.5e-77 292.4 434 50.9
PGR031G2493 Punica granatum HOM05D005806 ORTHO05D007119 8.5e-77 292.0 454 53.3
Nn3g21558 Nelumbo nucifera HOM05D005806 ORTHO05D007119 4.7e-75 286.2 458 49.1
Aa31LG8G3830 Aethionema arabicum HOM05D005806 ORTHO05D007119 1.4e-74 284.6 469 45.2
Sc13g0003160 Simmondsia chinensis HOM05D005806 ORTHO05D007119 1.4e-74 284.6 396 51.3
MELO3C006687.2 Cucumis melo HOM05D005806 ORTHO05D007119 1.8e-74 284.3 447 49.4
BolC1t04724H Brassica oleracea HOM05D005806 ORTHO05D007119 1.2e-73 281.6 453 46.8
C01p47550 Brassica napus HOM05D005806 ORTHO05D007119 2.0e-73 280.8 452 47.1
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 2.0e-73 280.8 446 50.2
Lsat_1_v5_gn_6_78121 Lactuca sativa HOM05D005806 ORTHO05D007119 2.0e-73 280.8 472 45.3
HanXRQChr03g0084151 Helianthus annuus HOM05D005806 ORTHO05D007119 7.5e-73 278.9 508 43.7
PSO832G4515 Papaver somniferum HOM05D005806 ORTHO05D007119 1.7e-72 277.7 424 48.8
Migut.N00070 Erythranthe guttata HOM05D005806 ORTHO05D007119 2.2e-72 277.3 511 44.8
PSO210G6439 Papaver somniferum HOM05D005806 ORTHO05D007119 2.2e-72 277.3 423 48.9
MBI18_g21793_MAGBIO Magnolia biondii HOM05D005806 ORTHO05D007119 1.1e-71 275.0 431 49.0
Oeu006424.1 Olea europaea HOM05D005806 ORTHO05D007119 1.1e-71 275.0 480 46.9
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 1.2e-70 271.6 443 48.8
MSTRG.10119 Avicennia marina HOM05D005806 ORTHO05D007119 4.5e-70 269.6 466 47.4
vmacro23238 Vaccinium macrocarpon HOM05D005806 ORTHO05D007119 4.5e-70 269.6 490 43.9
ECA240G3979 Erigeron canadensis HOM05D005806 ORTHO05D007119 7.7e-70 268.9 421 47.0
Actinidia40301 Actinidia chinensis HOM05D005806 ORTHO05D007119 3.8e-69 266.5 383 51.7
Cc03_g01460 Coffea canephora HOM05D005806 ORTHO05D007119 3.8e-69 266.5 538 40.5
HPP92_002231 Vanilla planifolia HOM05D005806 ORTHO05D007119 1.5e-68 264.6 419 45.1
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 9.4e-68 261.9 452 47.6
CsaV3_3G014910 Cucumis sativus L. HOM05D005806 ORTHO05D007119 6.8e-66 255.8 404 46.3
SalBow5G0238 Salvia bowleyana HOM05D005806 ORTHO05D007119 1.5e-65 254.6 518 42.9
Os03g0340700 Oryza sativa ssp. japonica HOM05D005806 ORTHO05D007119 1.3e-64 251.5 447 41.8
Lalb_Chr13g0298181 Lupinus albus HOM05D005806 ORTHO05D007119 9.1e-63 245.4 415 42.2
AUR62015254 Chenopodium quinoa HOM05D005806 ORTHO05D007119 1.4e-58 231.5 288 52.1
SEGI_25850 Sequoiadendron giganteum HOM05D005806 ORTHO05D007119 5.2e-58 229.6 555 35.3
TAR633G1904 Trochodendron aralioides HOM05D005806 ORTHO05D007119 6.8e-58 229.2 296 49.3
TAR362G1179 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.2e-54 218.4 335 49.9
CDE12G0749 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 7.7e-54 215.7 432 40.0
Zm00001eb016320 Zea mays HOM05D005806 ORTHO05D007119 1.2e-51 208.4 455 42.4
MD13G1163500 Malus domestica HOM05D005806 ORTHO05D007119 8.0e-51 205.7 290 48.3
Dinv29717 Davidia involucrata HOM05D005806 ORTHO05D007119 3.4e-49 200.3 290 51.0
CDE01G0725 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 2.2e-48 197.6 418 39.5
Rhsim04G0227400 Rhododendron simsii HOM05D005806 ORTHO05D007119 1.0e-45 188.7 352 43.5
HanXRQChr13g0413981 Helianthus annuus HOM05D005806 ORTHO05D007119 3.3e-44 183.7 137 67.9
SMO334G0099 Selaginella moellendorffii HOM05D005806 ORTHO05D007119 6.8e-34 149.4 156 51.9
AagrBONN_evm.TU.Sc2ySwM_228.3483 Anthoceros agrestis HOM05D005806 ORTHO05D007119 5.1e-29 133.3 134 61.2
unitig_699.g19987 Utricularia gibba HOM05D005806 ORTHO05D007119 2.8e-27 127.5 434 36.4
HPP92_002153 Vanilla planifolia HOM05D005806 ORTHO05D007119 6.2e-27 126.3 96 67.7
CSS0010946 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.8e-26 124.8 72 83.3
AL3G29680 Arabidopsis lyrata HOM05D005806 ORTHO05D007119 5.2e-26 123.2 255 43.5
CSS0023833 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 9.9e-25 119.0 72 81.9
Dinv29718 Davidia involucrata HOM05D000037 ORTHO05D000150 1.3e-24 118.6 133 59.4
TAR633G1627 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.1e-20 105.5 124 58.9
Pp3c12_16600 Physcomitrium patens HOM05D005806 ORTHO05D007119 5.6e-20 103.2 423 31.4
Mapoly0005s0119 Marchantia polymorpha HOM05D005806 ORTHO05D007119 3.6e-19 100.5 392 33.7
SGA_v2.0_scaffold119G32699 Striga asiatica HOM05D005806 ORTHO05D007119 2.4e-18 97.8 116 51.7
AUR62015253 Chenopodium quinoa HOM05D005806 ORTHO05D007119 8.9e-18 95.9 184 42.4
CBR_g4056 Chara braunii HOM05D005806 ORTHO05D007119 6.4e-16 89.7 119 43.7
FvH4_5g32480 Fragaria vesca HOM05D005806 ORTHO05D007119 1.4e-15 88.6 106 56.6
Pp3c4_12130 Physcomitrium patens HOM05D005806 ORTHO05D007119 7.8e-14 82.8 418 31.3
CBR_g31779 Chara braunii HOM05D000019 ORTHO05D000002 6.6e-13 79.7 93 39.8
TAR362G0821 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.5e-12 78.6 169 39.6
CBR_g39021 Chara braunii HOM05D000003 ORTHO05D000004 8.1e-11 72.8 86 38.4
arahy.Tifrunner.gnm1.ann1.5R3BA8 Arachis hypogaea HOM05D003946 ORTHO05D004485 5.8e-09 66.6 128 32.8
arahy.Tifrunner.gnm1.ann1.8RX8VY Arachis hypogaea HOM05D003946 ORTHO05D004485 5.8e-09 66.6 128 32.8
arahy.Tifrunner.gnm1.ann1.69CB9U Arachis hypogaea HOM05D003946 ORTHO05D004485 2.9e-08 64.3 130 31.5
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 3.8e-08 63.9 128 32.8
TAR625G1091 Trochodendron aralioides HOM05D003946 ORTHO05D004485 8.4e-08 62.8 123 33.3
Nn2g14258 Nelumbo nucifera HOM05D003946 ORTHO05D004485 1.1e-07 62.4 123 32.5
Ca_01529_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 1.4e-07 62.0 128 33.6
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 1.9e-07 61.6 123 32.5
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 1.9e-07 61.6 130 31.5
PSO210G1136 Papaver somniferum HOM05D003946 ORTHO05D004485 4.2e-07 60.5 123 31.7
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 5.4e-07 60.1 128 32.0
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 5.4e-07 60.1 123 32.5
PSO832G3676 Papaver somniferum HOM05D003946 ORTHO05D004485 5.4e-07 60.1 125 31.2
TPR.G35554 Trifolium pratense HOM05D003946 ORTHO05D004485 5.4e-07 60.1 128 32.0
CDE02G3171 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 7.1e-07 59.7 128 29.7
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 7.1e-07 59.7 123 31.7
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 7.1e-07 59.7 123 31.7
CDE04G0594 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 1.2e-06 58.9 128 29.7
PSO782G1270 Papaver somniferum HOM05D003946 ORTHO05D004485 1.2e-06 58.9 123 28.5
Psat5g270480 Pisum sativum HOM05D003946 ORTHO05D004485 1.2e-06 58.9 128 31.2
FAN21G2611 Fragaria x ananassa HOM05D003946 ORTHO05D004485 1.6e-06 58.5 123 30.9
Psat3g143400 Pisum sativum HOM05D003946 ORTHO05D004485 1.6e-06 58.5 123 31.7
Aa31LG2G20050 Aethionema arabicum HOM05D003946 ORTHO05D004485 2.1e-06 58.2 134 27.6
Medtr2g090135 Medicago truncatula HOM05D003946 ORTHO05D004485 2.7e-06 57.8 128 32.0
TAR636G0475 Trochodendron aralioides HOM05D003946 ORTHO05D004485 2.7e-06 57.8 123 30.9
FAN15G2853 Fragaria x ananassa HOM05D005806 ORTHO05D007119 3.5e-06 57.4 59 49.2
Carub.0007s1011 Capsella rubella HOM05D003946 ORTHO05D004485 4.6e-06 57.0 137 27.7


User provided reference genes

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