Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 1.1e-40 169.5 81 100.0
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 1.1e-40 169.5 81 100.0
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 1.2e-31 139.4 81 80.2
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 1.2e-31 139.4 81 80.2
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 2.0e-31 138.7 81 81.5
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 1.0e-30 136.3 81 79.0
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 2.3e-30 135.2 81 77.8
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 2.9e-30 134.8 81 80.2
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 1.1e-29 132.9 81 77.8
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 1.5e-29 132.5 81 77.8
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 7.3e-29 130.2 79 79.7
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 1.4e-27 125.9 81 74.1
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 72.8
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 8.9e-27 123.2 81 70.4
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 2.6e-26 121.7 81 70.4
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 2.6e-26 121.7 80 70.0
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 3.4e-26 121.3 81 69.1
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 4.4e-26 120.9 81 69.1
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.3e-25 119.4 81 69.1
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 1.3e-25 119.4 80 68.8
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 2.2e-25 118.6 81 67.9
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 6.4e-25 117.1 81 69.1
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 6.4e-25 117.1 80 68.8
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 65.4
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 1.1e-24 116.3 81 67.9
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 1.1e-24 116.3 81 67.9
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 66.7
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 1.8e-24 115.5 81 66.7
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 1.8e-24 115.5 81 65.4
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 4.1e-24 114.4 81 67.9
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 4.1e-24 114.4 81 67.9
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 5.4e-24 114.0 81 64.2
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 7.0e-24 113.6 81 64.2
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 7.0e-24 113.6 81 64.2
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 9.2e-24 113.2 81 66.7
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 1.2e-23 112.8 81 63.0
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 1.2e-23 112.8 81 63.0
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 1.2e-23 112.8 81 63.0
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 2.0e-23 112.1 81 66.7
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 2.0e-23 112.1 81 65.4
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 2.0e-23 112.1 81 64.2
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 4.6e-23 110.9 81 65.4
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 4.6e-23 110.9 81 61.7
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 5.9e-23 110.5 81 61.7
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 5.9e-23 110.5 81 61.7
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 1.0e-22 109.8 81 61.7
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 1.7e-22 109.0 81 64.2
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 1.7e-22 109.0 81 64.2
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 3.0e-22 108.2 82 64.6
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 3.0e-22 108.2 81 65.4
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 3.0e-22 108.2 81 65.4
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 5.0e-22 107.5 81 65.4
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 5.0e-22 107.5 81 65.4
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 5.0e-22 107.5 81 65.4
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 5.0e-22 107.5 81 65.4
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 6.6e-22 107.1 81 60.5
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 6.6e-22 107.1 81 63.0
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 6.6e-22 107.1 81 65.4
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 8.6e-22 106.7 81 59.3
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 8.6e-22 106.7 81 61.7
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 1.1e-21 106.3 81 61.7
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 1.1e-21 106.3 81 61.7
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 1.1e-21 106.3 81 61.7
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 1.1e-21 106.3 81 61.7
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 1.9e-21 105.5 81 60.5
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 2.5e-21 105.1 81 60.5
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 2.5e-21 105.1 82 62.2
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 3.3e-21 104.8 81 61.7
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 4.3e-21 104.4 81 60.5
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 4.3e-21 104.4 81 59.3
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 4.3e-21 104.4 81 59.3
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 7.3e-21 103.6 81 59.3
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 2.8e-20 101.7 81 60.5
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 3.6e-20 101.3 82 59.8
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 3.6e-20 101.3 81 56.8
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 6.2e-20 100.5 81 56.8
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 8.0e-20 100.1 81 55.6
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 8.0e-20 100.1 81 60.5
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 8.0e-20 100.1 81 58.0
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 8.0e-20 100.1 81 58.0
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 1.4e-19 99.4 79 59.5
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 1.8e-19 99.0 81 59.3
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 1.8e-19 99.0 81 59.3
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 1.8e-19 99.0 81 59.3
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 1.8e-19 99.0 81 59.3
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 1.8e-19 99.0 81 59.3
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 2.3e-19 98.6 81 58.0
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 2.6e-18 95.1 81 53.1
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 4.4e-18 94.4 81 58.0
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 7.5e-18 93.6 78 53.8
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 1.9e-16 89.0 76 53.9
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 2.4e-16 88.6 79 53.2
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 7.0e-16 87.0 79 53.2
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 1.7e-14 82.4 72 50.0
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 1.7e-14 82.4 57 63.2
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 2.8e-12 75.1 81 44.4
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 4.7e-12 74.3 59 59.3
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 6.2e-12 73.9 57 54.4
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 2.3e-11 72.0 80 45.0
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 5.2e-11 70.9 57 57.9
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 5.2e-11 70.9 59 62.7
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 5.2e-11 70.9 80 45.0
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 4.4e-10 67.8 77 46.8
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 5.8e-10 67.4 59 59.3
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.7e-09 65.9 62 54.8
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 8.3e-09 63.5 66 42.4
MD02G1271100 Malus domestica HOM05D007025 ORTHO05D008862 4.6e-07 57.8 45 55.6
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 1.7e-06 55.8 46 52.2
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 1.7e-06 55.8 46 52.2
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 1.7e-06 55.8 37 67.6
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 3.0e-06 55.1 49 49.0


User provided reference genes

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