Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 4.0e-34 147.5 74 100.0
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 2.4e-23 111.7 88 67.0
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 2.1e-19 98.6 87 60.9
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 2.4e-18 95.1 85 56.5
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 7.6e-17 90.1 87 54.0
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 2.9e-16 88.2 85 55.3
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 1.2e-14 82.8 87 52.9
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 1.6e-14 82.4 84 57.1
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 1.6e-14 82.4 87 49.4
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 2.7e-14 81.6 89 48.3
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 2.1e-11 72.0 85 48.2
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 1.4e-10 69.3 83 44.6
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-09 65.9 87 36.8
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 4.5e-09 64.3 69 44.9
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-08 63.2 43 53.5
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.0e-08 63.2 39 64.1
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.3e-08 62.8 46 56.5
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.7e-08 62.4 44 56.8
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.7e-08 62.4 44 56.8
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 2.2e-08 62.0 86 39.5
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.9e-08 61.6 43 51.2
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.9e-08 61.6 39 61.5
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.9e-08 61.6 39 59.0
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.9e-08 61.6 39 61.5
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.9e-08 61.6 39 59.0
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.8e-08 61.2 39 59.0
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 3.8e-08 61.2 95 37.9
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 4.9e-08 60.8 92 39.1
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 6.5e-08 60.5 94 37.2
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 6.5e-08 60.5 94 37.2
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.5e-08 60.5 43 53.5
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.5e-08 60.5 43 53.5
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.5e-08 60.5 43 51.2
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 6.5e-08 60.5 90 38.9
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 8.4e-08 60.1 89 37.1
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 8.4e-08 60.1 43 48.8
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 1.1e-07 59.7 43 51.2
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.1e-07 59.7 41 58.5
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 1.4e-07 59.3 92 34.8
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 1.4e-07 59.3 43 48.8
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 1.4e-07 59.3 41 56.1
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 1.9e-07 58.9 83 41.0
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.5e-07 58.5 94 34.0
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 2.5e-07 58.5 39 59.0
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 2.5e-07 58.5 41 48.8
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 3.2e-07 58.2 90 36.7
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 3.2e-07 58.2 39 56.4
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 3.2e-07 58.2 43 55.8
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.2e-07 58.2 39 56.4
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.2e-07 58.2 94 36.2
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 3.2e-07 58.2 43 53.5
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 3.2e-07 58.2 41 51.2
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 3.2e-07 58.2 41 53.7
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.2e-07 58.2 63 44.4
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.2e-07 58.2 39 59.0
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.2e-07 57.8 38 55.3
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.2e-07 57.8 87 34.5
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 4.2e-07 57.8 44 47.7
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.2e-07 57.8 39 56.4
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 4.2e-07 57.8 39 53.8
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 4.2e-07 57.8 39 53.8
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 4.2e-07 57.8 43 48.8
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 4.2e-07 57.8 38 63.2
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 5.5e-07 57.4 42 52.4
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 5.5e-07 57.4 82 34.1
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 7.1e-07 57.0 39 59.0
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 7.1e-07 57.0 92 38.0
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.1e-07 57.0 43 51.2
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 7.1e-07 57.0 41 56.1
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 9.3e-07 56.6 57 36.8
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 9.3e-07 56.6 43 53.5
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 9.3e-07 56.6 40 52.5
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.3e-07 56.6 40 52.5
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 9.3e-07 56.6 39 53.8
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 9.3e-07 56.6 39 48.7
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 9.3e-07 56.6 85 34.1
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 1.2e-06 56.2 88 34.1
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 1.2e-06 56.2 43 48.8
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 1.2e-06 56.2 94 31.9
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.2e-06 56.2 39 48.7
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 1.2e-06 56.2 44 45.5
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 1.2e-06 56.2 92 32.6
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.2e-06 56.2 44 50.0
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 1.2e-06 56.2 40 52.5
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.6e-06 55.8 41 53.7
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.6e-06 55.8 43 48.8
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.6e-06 55.8 46 47.8
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 1.6e-06 55.8 39 53.8
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.6e-06 55.8 38 55.3
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.6e-06 55.8 39 48.7
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.6e-06 55.8 42 52.4
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 1.6e-06 55.8 39 59.0
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 2.1e-06 55.5 39 51.3
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.1e-06 55.5 39 51.3
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 2.1e-06 55.5 41 46.3
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 2.1e-06 55.5 39 59.0
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.7e-06 55.1 43 46.5
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 2.7e-06 55.1 43 44.2
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 2.7e-06 55.1 83 36.1
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 2.7e-06 55.1 39 51.3
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.5e-06 54.7 92 38.0
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 3.5e-06 54.7 39 53.8
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 3.5e-06 54.7 41 51.2
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 3.5e-06 54.7 39 51.3
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 3.5e-06 54.7 39 51.3
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-06 54.7 39 51.3
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-06 54.7 39 51.3
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 4.6e-06 54.3 41 46.3
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.6e-06 54.3 41 48.8
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 4.6e-06 54.3 39 51.3
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 6.0e-06 53.9 44 47.7
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.0e-06 53.9 82 35.4
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.0e-06 53.9 94 34.0
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 6.0e-06 53.9 94 34.0
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 6.0e-06 53.9 78 41.0
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 6.0e-06 53.9 94 33.0
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 6.0e-06 53.9 44 45.5
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 7.9e-06 53.5 82 37.8
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 7.9e-06 53.5 39 53.8
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 7.9e-06 53.5 82 35.4
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.9e-06 53.5 82 35.4
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.9e-06 53.5 89 36.0
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 7.9e-06 53.5 41 43.9
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 7.9e-06 53.5 41 43.9
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 7.9e-06 53.5 39 51.3
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 7.9e-06 53.5 39 53.8


User provided reference genes

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