Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 0.0e+00 1645.6 845 100.0
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 0.0e+00 1285.0 861 78.5
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 0.0e+00 1255.7 865 77.3
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 0.0e+00 1248.0 859 76.9
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 0.0e+00 1220.7 868 74.9
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 0.0e+00 1216.4 866 75.2
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 0.0e+00 1216.4 865 76.0
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 0.0e+00 1194.5 864 73.6
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 0.0e+00 1190.3 863 73.7
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 0.0e+00 1169.8 878 72.3
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 0.0e+00 1124.8 858 70.5
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 1.0e-298 1030.0 862 65.0
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 5.2e-295 1017.7 862 66.4
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 1.4e-292 1009.6 877 63.6
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 5.4e-292 1007.7 853 64.9
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 8.9e-287 990.3 850 64.0
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 7.5e-286 987.3 867 62.5
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 3.2e-284 981.9 869 61.3
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.1e-284 981.5 869 60.8
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 5.4e-284 981.1 867 62.7
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 4.6e-283 978.0 872 62.4
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 1.5e-281 973.0 884 61.9
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 3.3e-281 971.8 868 62.6
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 6.2e-280 967.6 869 60.8
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.1e-279 966.8 829 64.4
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 1.2e-278 963.4 831 63.4
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 2.2e-277 959.1 840 62.7
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 3.7e-277 958.4 873 61.4
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 2.4e-276 955.7 870 61.3
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 4.1e-276 954.9 866 61.7
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 1.3e-274 949.9 840 62.0
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 2.3e-274 949.1 850 62.5
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.9e-274 948.3 863 61.1
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 1.9e-273 946.0 975 56.6
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 2.5e-273 945.7 860 60.3
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 4.3e-273 944.9 863 60.6
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 2.6e-270 935.6 866 60.0
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.4e-270 935.3 862 60.1
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.4e-270 935.3 870 60.1
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 2.2e-269 932.6 890 58.8
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 3.2e-268 928.7 837 60.8
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.1e-267 926.0 874 59.6
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 1.0e-266 923.7 794 63.4
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 1.1e-265 920.2 772 65.0
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.2e-264 916.8 862 61.1
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 1.6e-264 916.4 865 59.1
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 2.8e-264 915.6 872 58.4
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 6.2e-264 914.4 866 58.3
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 4.9e-261 904.8 866 59.1
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.4e-260 903.3 834 59.6
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 4.1e-260 901.7 874 60.5
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 5.4e-260 901.4 873 58.3
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 1.0e-258 897.1 752 65.8
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 3.6e-256 888.6 878 57.1
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 2.0e-254 882.9 881 56.9
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 9.9e-254 880.6 854 58.3
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.6e-251 873.2 871 57.3
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 3.5e-251 872.1 915 56.4
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 4.6e-251 871.7 883 57.0
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 4.6e-251 871.7 857 58.6
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 7.8e-251 870.9 877 57.4
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 2.3e-250 869.4 898 56.0
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 3.9e-250 868.6 860 56.5
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 4.3e-249 865.1 868 57.4
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 2.1e-248 862.8 865 56.5
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 9.9e-246 854.0 839 56.6
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.9e-245 852.4 847 57.3
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 8.4e-245 850.9 764 63.1
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 8.4e-245 850.9 865 56.2
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 2.4e-244 849.4 866 55.7
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 9.3e-244 847.4 741 64.1
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 3.5e-243 845.5 850 56.2
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 2.3e-242 842.8 866 55.2
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 3.0e-242 842.4 870 55.5
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 3.9e-242 842.0 845 56.4
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 8.1e-240 834.3 718 63.1
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 1.4e-239 833.6 859 55.5
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 5.3e-239 831.6 838 56.1
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.5e-238 830.1 852 56.8
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 3.4e-238 828.9 880 54.5
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 4.9e-237 825.1 863 53.8
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 1.1e-236 823.9 865 55.0
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 3.0e-234 815.8 863 53.7
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-233 813.9 861 53.9
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 1.9e-233 813.1 919 52.4
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 7.4e-233 811.2 861 52.8
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 2.8e-232 809.3 853 55.1
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 5.3e-231 805.1 779 58.3
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 1.4e-228 797.0 859 53.0
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 7.1e-228 794.7 951 50.1
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 2.7e-227 792.7 862 53.1
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 3.5e-227 792.3 866 52.5
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 4.6e-227 792.0 845 54.1
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 6.0e-227 791.6 862 53.0
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 7.9e-227 791.2 886 52.1
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 2.3e-226 789.6 863 53.3
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 5.1e-226 788.5 863 52.8
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 5.7e-225 785.0 828 53.4
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 1.6e-224 783.5 1096 45.8
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 2.8e-224 782.7 874 53.8
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 4.8e-224 781.9 863 52.1
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 4.1e-223 778.9 860 54.1
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 5.3e-223 778.5 862 54.1
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.3e-221 773.9 855 52.7
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 6.5e-221 771.5 852 52.3
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 8.5e-221 771.2 734 58.4
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 5.5e-220 768.5 866 53.1
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 5.7e-217 758.4 859 52.5
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 7.4e-217 758.1 870 52.3
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 6.3e-216 755.0 843 51.8
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.3e-208 730.7 878 49.1
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 1.8e-207 726.9 873 50.3
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 2.6e-206 723.0 857 51.1
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 6.1e-203 711.8 744 56.3
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 2.0e-198 696.8 552 69.0
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 5.9e-198 695.3 598 63.7
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 1.3e-197 694.1 820 48.8
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 3.6e-195 686.0 825 49.0
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 1.6e-187 660.6 867 46.7
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.0e-182 643.7 556 64.2
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 4.2e-180 636.0 826 46.4
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 5.7e-177 625.5 573 59.3
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 5.4e-175 619.0 866 45.5
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 1.7e-165 587.4 820 45.1
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 4.7e-163 579.3 877 43.1
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 4.0e-162 576.2 877 43.0
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 2.7e-158 563.5 451 67.8
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 2.8e-155 553.5 745 44.4
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 7.1e-151 538.9 781 44.0
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 7.3e-148 528.9 756 43.9
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 6.9e-138 495.7 564 50.2
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 4.2e-119 433.3 886 35.1
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 2.3e-117 427.6 540 46.7
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.1e-116 425.2 435 58.4
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 4.8e-115 419.9 529 47.8
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 2.5e-100 370.9 807 33.7
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 2.2e-96 357.8 642 36.1
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.3e-91 342.0 276 68.5
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 1.2e-89 335.5 724 34.1
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.1e-84 318.9 366 50.5
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 9.4e-79 299.3 252 63.9
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 9.8e-76 289.3 314 53.2
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 5.2e-53 213.8 195 65.6
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 9.8e-52 209.5 251 46.6
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 4.3e-39 167.5 170 55.3
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 1.2e-36 159.5 137 62.8
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 5.1e-32 144.1 193 45.6
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 7.6e-28 130.2 209 42.6
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 7.6e-28 130.2 209 42.6
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 3.0e-24 118.2 186 43.0
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 3.0e-24 118.2 186 43.0
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 2.8e-22 111.7 322 28.9
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 1.7e-19 102.4 177 40.7
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 1.2e-17 96.3 60 86.7
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 7.9e-17 93.6 101 53.5
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 1.1e-15 89.7 172 39.5
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 1.5e-15 89.4 97 54.6
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 2.1e-14 85.5 202 35.1
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 6.2e-14 84.0 177 32.2
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 6.9e-13 80.5 194 32.5
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 9.0e-13 80.1 130 39.2
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 1.2e-09 69.7 78 46.2
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 2.7e-09 68.6 46 69.6
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 2.7e-09 68.6 71 50.7
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-08 66.2 242 24.8
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 8.7e-08 63.5 57 54.4
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 2.5e-07 62.0 36 86.1
Glyma.06G214300 Glycine max HOM05D004054 ORTHO05D211863 3.7e-06 58.2 46 67.4
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 8.1e-06 57.0 62 50.0
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 8.1e-06 57.0 86 45.3


User provided reference genes

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