Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 2.6e-65 251.9 125 100.0
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 1.5e-44 183.0 130 73.8
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.5e-44 183.0 127 72.4
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 2.3e-42 175.6 130 71.5
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.9e-37 158.7 110 73.6
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 2.9e-37 158.7 110 75.5
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 1.8e-34 149.4 128 61.7
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 8.9e-34 147.1 126 61.9
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.8e-32 142.1 131 59.5
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 8.3e-32 140.6 131 58.0
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.4e-31 139.8 117 60.7
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 1.4e-31 139.8 112 69.6
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 1.4e-31 139.8 120 63.3
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 1.8e-31 139.4 111 67.6
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 2.4e-31 139.0 118 59.3
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 4.1e-31 138.3 128 58.6
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 7.0e-31 137.5 129 59.7
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 9.2e-31 137.1 111 66.7
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 3.5e-30 135.2 126 54.8
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 3.5e-30 135.2 115 60.9
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 1.3e-29 133.3 130 56.2
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 5.0e-29 131.3 129 52.7
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 8.6e-29 130.6 117 64.1
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 3.3e-28 128.6 113 60.2
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 3.3e-28 128.6 131 51.1
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 4.3e-28 128.3 131 51.1
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 4.3e-28 128.3 113 58.4
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 4.3e-28 128.3 110 60.0
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 7.3e-28 127.5 113 57.5
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 7.3e-28 127.5 113 57.5
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 9.5e-28 127.1 119 60.5
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 1.6e-27 126.3 117 60.7
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 1.6e-27 126.3 117 65.0
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 2.1e-27 125.9 129 55.0
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 3.6e-27 125.2 110 62.7
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 3.6e-27 125.2 130 53.1
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 4.7e-27 124.8 129 54.3
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 6.1e-27 124.4 112 58.0
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.0e-26 123.6 117 60.7
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 2.3e-26 122.5 117 59.8
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.0e-26 122.1 131 52.7
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.5e-25 119.8 112 60.7
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 3.4e-25 118.6 116 60.3
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 4.4e-25 118.2 113 57.5
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 3.7e-24 115.2 114 55.3
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 1.4e-23 113.2 107 57.0
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 7.0e-23 110.9 114 52.6
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 1.6e-22 109.8 127 47.2
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 2.0e-22 109.4 114 53.5
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 7.8e-22 107.5 120 48.3
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 1.7e-21 106.3 125 47.2
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 2.3e-21 105.9 105 51.4
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 3.9e-21 105.1 106 53.8
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 3.9e-21 105.1 125 47.2
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 1.1e-20 103.6 120 51.7
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 3.3e-20 102.1 108 54.6
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 3.3e-20 102.1 114 61.4
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 2.1e-19 99.4 119 47.1
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 4.7e-19 98.2 122 46.7
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 4.7e-19 98.2 113 48.7
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 4.7e-19 98.2 126 46.0
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.1e-18 97.1 115 47.0
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.1e-18 97.1 115 47.0
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 8.9e-18 94.0 110 49.1
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 2.0e-17 92.8 117 48.7
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 2.6e-17 92.4 121 45.5
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 7.5e-17 90.9 105 49.5
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 1.7e-16 89.7 109 46.8
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 3.7e-16 88.6 110 46.4
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 4.9e-16 88.2 123 43.1
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.1e-15 87.0 98 51.0
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 1.1e-15 87.0 120 45.8
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 1.4e-15 86.7 114 44.7
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 1.4e-15 86.7 103 49.5
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 3.2e-15 85.5 124 43.5
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 4.1e-15 85.1 108 46.3
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 9.2e-15 84.0 103 45.6
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 9.2e-15 84.0 103 45.6
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 1.6e-14 83.2 113 40.7
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.6e-14 83.2 122 40.2
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 2.1e-14 82.8 113 42.5
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 6.0e-14 81.3 110 42.7
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 1.3e-13 80.1 111 43.2
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 1.3e-13 80.1 114 45.6
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.3e-13 80.1 115 43.5
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 1.7e-13 79.7 119 42.0
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 2.3e-13 79.3 128 37.5
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 6.6e-13 77.8 107 41.1
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 1.1e-12 77.0 126 41.3
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 1.5e-12 76.6 116 38.8
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.9e-12 76.3 116 39.7
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.9e-12 76.3 116 39.7
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.5e-12 75.9 105 41.9
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 2.5e-12 75.9 108 44.4
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 4.3e-12 75.1 101 41.6
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 7.3e-12 74.3 122 38.5
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 1.6e-11 73.2 113 40.7
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 1.6e-11 73.2 107 37.4
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 2.1e-11 72.8 113 40.7
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 2.8e-11 72.4 89 49.4
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 2.8e-11 72.4 131 38.2
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 3.6e-11 72.0 114 44.7
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 4.7e-11 71.6 115 42.6
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 4.7e-11 71.6 115 42.6
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 4.7e-11 71.6 115 42.6
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 8.1e-11 70.9 115 38.3
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 8.1e-11 70.9 102 41.2
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 1.1e-10 70.5 113 35.4
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 1.1e-10 70.5 102 45.1
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 1.4e-10 70.1 110 40.0
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 1.8e-10 69.7 112 41.1
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 1.8e-10 69.7 118 39.8
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.8e-10 69.7 120 36.7
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 1.8e-10 69.7 110 40.9
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 2.3e-10 69.3 131 35.1
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.3e-10 69.3 120 36.7
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.3e-10 69.3 113 35.4
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 2.3e-10 69.3 128 34.4
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 3.1e-10 68.9 120 37.5
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 3.1e-10 68.9 115 33.9
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 5.2e-10 68.2 108 38.9
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 6.8e-10 67.8 123 39.0
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 8.9e-10 67.4 106 38.7
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.2e-09 67.0 111 38.7
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 1.5e-09 66.6 111 37.8
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 2.0e-09 66.2 110 40.9
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 2.6e-09 65.9 122 33.6
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 9.9e-09 63.9 131 35.9
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 9.9e-09 63.9 133 31.6
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.3e-08 63.5 122 34.4
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 2.2e-08 62.8 107 36.4
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 1.1e-07 60.5 120 32.5
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 1.4e-07 60.1 116 35.3
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.4e-07 60.1 116 34.5
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 1.9e-07 59.7 88 42.0
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.4e-07 59.3 104 37.5
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.4e-07 59.3 104 37.5
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 5.4e-07 58.2 113 33.6
ECA236G4773 Erigeron canadensis HOM05D003428 ORTHO05D004131 1.6e-06 56.6 70 45.7
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.6e-06 56.6 104 36.5
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 3.5e-06 55.5 113 32.7
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 3.5e-06 55.5 106 36.8
Actinidia26927 Actinidia chinensis HOM05D004992 ORTHO05D006004 6.0e-06 54.7 75 45.3


User provided reference genes

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