Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 9.8e-206 719.9 370 100.0
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 7.6e-166 587.4 368 80.4
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 1.6e-163 579.7 371 79.2
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 9.6e-161 570.5 371 77.9
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 1.3e-160 570.1 369 78.0
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 3.8e-157 558.5 368 76.9
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 1.1e-156 557.0 371 76.3
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 6.0e-155 551.2 370 76.2
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 1.0e-154 550.4 371 76.0
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 1.2e-150 537.0 372 72.8
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 8.4e-149 530.8 356 75.8
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 5.5e-148 528.1 408 68.1
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 5.5e-132 474.9 373 64.6
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 7.2e-132 474.6 372 63.7
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 1.2e-131 473.8 372 64.0
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.1e-131 473.0 372 63.7
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.7e-131 472.6 372 63.7
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 7.9e-131 471.1 372 64.5
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 2.3e-130 469.5 373 63.0
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 1.3e-128 463.8 373 62.5
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 2.8e-128 462.6 366 63.9
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.4e-127 459.5 366 62.6
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 2.4e-127 459.5 311 74.9
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 2.4e-127 459.5 370 61.4
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 3.1e-127 459.1 365 63.3
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 2.0e-126 456.4 370 61.4
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.5e-126 455.3 364 62.4
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 5.9e-126 454.9 372 62.4
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 1.0e-125 454.1 365 63.3
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 1.3e-125 453.8 364 63.2
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 8.5e-125 451.1 378 60.8
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 2.1e-123 446.4 370 62.7
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 2.7e-123 446.0 370 61.1
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 2.7e-123 446.0 375 61.1
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 5.1e-122 441.8 375 59.7
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.5e-121 440.3 370 62.4
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 7.4e-121 438.0 369 62.9
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.7e-120 436.8 372 57.5
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 2.2e-120 436.4 372 57.8
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 1.2e-118 430.6 367 59.7
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 1.2e-118 430.6 367 59.7
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 7.7e-118 427.9 369 60.4
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 1.7e-117 426.8 366 58.2
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 2.2e-117 426.4 370 60.8
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 3.8e-117 425.6 366 57.4
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 8.5e-117 424.5 375 58.7
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.9e-116 423.3 371 59.3
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 2.5e-116 422.9 371 56.9
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 1.4e-114 417.2 368 55.7
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 6.7e-114 414.8 370 57.8
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 6.7e-114 414.8 367 56.1
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 1.1e-113 414.1 370 58.9
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 2.6e-113 412.9 368 55.2
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 5.7e-113 411.8 369 58.8
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 7.4e-113 411.4 373 56.8
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.7e-112 410.2 371 56.9
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 1.7e-112 410.2 368 54.3
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 2.2e-112 409.8 371 55.3
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 2.8e-112 409.5 366 57.4
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 8.2e-112 407.9 362 55.5
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.8e-111 406.8 368 54.1
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 2.4e-111 406.4 364 57.4
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 5.3e-111 405.2 369 58.0
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 2.0e-110 403.3 324 63.3
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 7.7e-110 401.4 383 53.3
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.7e-109 400.2 366 57.7
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 2.2e-109 399.8 371 56.6
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 6.5e-109 398.3 362 54.1
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.5e-108 397.1 366 56.3
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 4.2e-108 395.6 371 54.4
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 9.4e-108 394.4 366 56.3
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.6e-107 393.7 367 57.2
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.6e-107 393.7 368 56.0
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 2.1e-107 393.3 368 56.0
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 3.6e-107 392.5 375 54.4
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 6.1e-107 391.7 366 53.6
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 2.3e-106 389.8 367 55.0
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 8.8e-106 387.9 366 55.7
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.5e-105 387.1 386 53.6
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 2.0e-105 386.7 373 54.2
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 3.4e-105 386.0 330 59.1
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 5.7e-105 385.2 365 55.9
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 1.3e-104 384.0 368 54.6
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 2.2e-104 383.3 486 46.3
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 2.8e-104 382.9 382 54.5
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 3.7e-104 382.5 370 55.1
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 4.8e-104 382.1 366 54.4
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 1.1e-103 380.9 367 54.8
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 1.8e-103 380.2 368 54.9
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 3.1e-103 379.4 365 54.0
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 3.1e-103 379.4 367 54.8
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 9.1e-103 377.9 364 53.3
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 1.6e-102 377.1 392 50.8
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.6e-102 377.1 315 61.0
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.9e-101 372.9 364 52.5
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 1.5e-100 370.5 508 43.9
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 1.6e-99 367.1 406 48.5
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 1.6e-99 367.1 400 50.2
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 2.1e-99 366.7 316 60.4
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 2.7e-99 366.3 406 50.0
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 1.8e-98 363.6 364 52.7
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 2.3e-98 363.2 371 50.9
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 3.0e-98 362.8 366 51.9
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 5.2e-98 362.1 365 52.6
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 9.8e-97 357.8 371 50.4
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 3.7e-96 355.9 363 49.3
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 6.3e-96 355.1 373 50.1
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 1.1e-95 354.4 366 51.4
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.4e-95 354.0 371 50.9
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 2.4e-95 353.2 361 52.4
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 4.1e-95 352.4 381 49.3
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 7.0e-95 351.7 312 57.7
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 9.1e-95 351.3 353 51.8
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 1.6e-94 350.5 371 50.1
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 5.9e-94 348.6 366 49.7
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 2.3e-93 346.7 565 40.4
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 5.0e-93 345.5 287 58.5
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 8.6e-93 344.7 296 58.8
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 1.9e-92 343.6 372 48.7
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 5.6e-92 342.0 316 55.7
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 9.5e-92 341.3 355 51.0
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 2.1e-91 340.1 367 50.1
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 2.8e-91 339.7 351 51.9
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 8.0e-91 338.2 352 51.4
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 1.8e-90 337.0 372 48.9
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 8.3e-88 328.2 354 50.3
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 4.1e-87 325.9 372 47.3
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 2.6e-81 306.6 310 51.9
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 4.4e-81 305.8 279 60.6
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 4.4e-81 305.8 476 38.7
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 3.1e-74 283.1 298 51.3
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 2.4e-71 273.5 208 63.5
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.3e-69 266.9 210 62.9
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.6e-67 260.8 312 46.8
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 1.5e-65 254.2 208 58.7
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 3.4e-65 253.1 228 54.8
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.4e-65 252.7 205 61.5
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.6e-65 251.9 205 61.5
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 3.2e-63 246.5 310 44.5
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 1.2e-62 244.6 200 59.5
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.1e-62 243.8 210 58.6
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.7e-61 240.7 339 41.6
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 6.6e-61 238.8 374 35.8
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 1.1e-60 238.0 315 41.6
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.3e-60 236.1 159 73.0
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.4e-57 226.5 166 67.5
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 7.6e-57 225.3 166 67.5
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 7.6e-57 225.3 166 66.9
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.7e-56 224.2 163 66.3
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.3e-55 218.4 160 67.5
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.1e-54 217.2 371 36.9
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 3.5e-54 216.5 374 36.6
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 7.8e-54 215.3 166 64.5
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.8e-51 206.8 376 34.3
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.4e-50 204.5 371 33.4
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 3.1e-50 203.4 166 62.7
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 2.9e-48 196.8 370 32.4
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.1e-47 194.9 189 56.6
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 7.1e-47 192.2 155 58.7
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 5.6e-44 182.6 202 44.1
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 2.6e-41 173.7 160 55.6
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 4.5e-41 172.9 258 41.5
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 2.2e-40 170.6 369 31.7
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.4e-39 167.9 130 63.1
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.3e-37 161.4 161 50.3
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.9e-37 159.8 105 74.3
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 5.1e-37 159.5 161 49.7
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.4e-36 155.6 152 54.6
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 8.1e-35 152.1 123 58.5
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 1.8e-29 134.4 173 41.6
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 2.3e-29 134.0 128 52.3
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.5e-28 131.3 138 48.6
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 5.9e-25 119.4 136 44.1
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 8.4e-24 115.5 136 44.1
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 5.0e-16 89.7 250 26.0
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 4.6e-14 83.2 304 27.0
arahy.Tifrunner.gnm1.ann1.C5B8HT Arachis hypogaea HOM05D002209 ORTHO05D004761 4.3e-12 76.6 43 81.4


User provided reference genes

Program Settings