Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 1.6e-168 595.9 286 100.0
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 2.7e-134 482.3 377 67.1
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 3.1e-114 415.6 376 57.4
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 3.7e-112 408.7 381 56.2
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 3.0e-109 399.1 377 56.0
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 2.5e-108 396.0 377 55.7
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 1.7e-104 383.3 377 54.1
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 5.4e-103 378.3 371 54.4
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 8.4e-96 354.4 394 49.7
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 4.4e-89 332.0 378 46.6
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 1.9e-87 326.6 376 45.5
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 4.2e-87 325.5 376 45.7
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 1.2e-86 323.9 373 45.3
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 2.7e-86 322.8 380 45.3
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 2.7e-86 322.8 376 45.2
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 3.5e-86 322.4 377 45.1
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.7e-85 320.1 376 44.4
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 5.1e-85 318.5 377 44.8
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 5.6e-84 315.1 377 44.3
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.3e-83 313.9 377 44.6
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 1.6e-83 313.5 382 43.7
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 2.1e-83 313.2 385 44.9
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.8e-83 312.8 381 43.0
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 5.3e-82 308.5 378 42.6
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 1.2e-81 307.4 378 42.9
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 1.5e-81 307.0 380 43.7
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 2.6e-81 306.2 376 43.6
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 3.4e-81 305.8 400 42.2
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.4e-81 305.4 381 42.5
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 4.4e-81 305.4 402 41.8
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 2.2e-80 303.1 351 48.4
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 2.2e-80 303.1 377 42.4
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 8.4e-80 301.2 376 44.7
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 1.1e-79 300.8 378 42.9
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.1e-79 300.8 376 43.1
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 1.6e-78 297.0 377 41.9
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 3.5e-78 295.8 380 41.6
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 4.6e-78 295.4 377 41.9
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 6.0e-78 295.0 376 43.1
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 1.3e-77 293.9 380 41.3
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 5.1e-77 292.0 377 43.0
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 6.6e-77 291.6 377 41.4
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 8.7e-77 291.2 380 42.6
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 8.7e-77 291.2 381 40.2
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 8.7e-77 291.2 381 40.2
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 8.7e-77 291.2 377 41.9
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 9.6e-76 287.7 370 40.5
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 1.3e-75 287.3 405 39.3
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 1.6e-75 287.0 378 41.5
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 2.1e-75 286.6 380 42.1
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 2.1e-75 286.6 377 40.6
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 3.6e-75 285.8 323 49.8
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 3.6e-75 285.8 377 40.6
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 6.2e-75 285.0 375 41.9
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 1.1e-74 284.3 377 41.6
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 1.8e-74 283.5 376 41.0
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 2.4e-74 283.1 379 40.9
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 2.4e-74 283.1 379 40.9
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 6.9e-74 281.6 400 41.2
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 2.0e-73 280.0 370 40.8
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 2.6e-73 279.6 287 52.3
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 4.5e-73 278.9 377 40.3
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 7.6e-73 278.1 369 42.3
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 2.2e-72 276.6 376 39.9
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 2.4e-71 273.1 360 41.1
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 5.5e-71 271.9 375 40.0
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 9.3e-71 271.2 371 41.5
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 2.1e-70 270.0 377 40.6
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 2.7e-70 269.6 346 43.6
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 3.5e-70 269.2 361 40.4
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 7.9e-70 268.1 375 39.7
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 1.0e-69 267.7 468 35.3
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 1.5e-68 263.8 378 39.4
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 1.5e-68 263.8 384 40.1
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 7.4e-68 261.5 343 41.1
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 1.6e-67 260.4 334 41.0
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 2.4e-66 256.5 420 35.7
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 2.4e-66 256.5 388 39.2
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 2.6e-65 253.1 377 38.5
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 6.5e-64 248.4 349 37.8
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 3.5e-62 242.7 376 36.7
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 1.8e-61 240.4 372 37.4
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 2.4e-58 229.9 329 40.7
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 5.0e-56 222.2 300 42.7
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 1.2e-54 217.6 257 48.6
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.8e-53 213.8 302 41.1
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.8e-53 213.8 329 38.0
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 6.7e-53 211.8 361 35.5
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 1.9e-52 210.3 292 38.7
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 2.2e-51 206.8 338 38.8
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 1.7e-48 197.2 274 40.9
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 5.1e-45 185.7 392 32.4
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 5.0e-40 169.1 372 29.6
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.7e-38 162.5 183 44.8
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 3.9e-37 159.5 299 33.8
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 1.1e-36 157.9 373 29.8
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.3e-35 154.5 186 44.6
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 7.0e-34 148.7 342 30.1
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 3.5e-33 146.4 261 35.6
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 2.6e-28 130.2 338 29.0
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 5.3e-26 122.5 73 74.0
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.3e-19 101.3 74 59.5
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 3.7e-19 99.8 73 60.3
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 3.8e-16 89.7 67 62.7
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 6.8e-13 79.0 93 39.8
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 5.7e-12 75.9 56 58.9
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 9.8e-12 75.1 62 50.0
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 1.0e-08 65.1 329 21.9
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 2.3e-08 63.9 151 29.8
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 3.3e-07 60.1 146 30.1
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 7.3e-07 58.9 151 28.5
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 9.5e-07 58.5 151 27.8
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 1.2e-06 58.2 151 27.8
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 1.6e-06 57.8 151 29.1
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 1.6e-06 57.8 151 30.5
C06p36300 Brassica napus HOM05D001404 ORTHO05D009009 3.6e-06 56.6 56 50.0
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 3.6e-06 56.6 151 27.8
MELO3C012030.2 Cucumis melo HOM05D001404 ORTHO05D009009 8.0e-06 55.5 35 68.6


User provided reference genes

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