Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 2.2e-197 692.2 378 100.0
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 1.7e-152 543.1 378 76.5
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 1.7e-152 543.1 378 75.9
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 1.2e-150 537.0 378 75.4
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 3.9e-149 531.9 378 74.1
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 1.6e-147 526.6 375 76.3
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 2.1e-147 526.2 375 76.5
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 5.8e-145 518.1 381 75.6
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 6.6e-141 504.6 380 74.2
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 5.2e-138 495.0 380 71.3
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 1.5e-137 493.4 377 71.4
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 1.4e-135 486.9 379 71.5
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 3.6e-123 445.7 380 64.2
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 4.0e-122 442.2 380 64.7
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 1.2e-121 440.7 385 63.1
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 4.9e-120 435.3 380 63.4
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 1.9e-119 433.3 376 63.0
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.7e-118 429.5 378 63.2
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 2.7e-118 429.5 379 61.7
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 1.3e-117 427.2 377 60.7
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.3e-117 427.2 378 63.2
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 5.1e-117 425.2 380 61.6
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 1.1e-116 424.1 378 62.7
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 5.6e-116 421.8 382 62.6
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 3.6e-115 419.1 381 62.7
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 3.6e-115 419.1 429 57.1
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 8.1e-115 417.9 374 60.7
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 1.1e-114 417.5 378 60.6
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 1.4e-114 417.2 379 63.1
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 1.8e-114 416.8 381 61.2
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 1.8e-114 416.8 378 60.8
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 1.8e-114 416.8 380 61.3
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 3.1e-114 416.0 381 61.2
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 6.9e-114 414.8 385 60.0
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 2.6e-113 412.9 385 61.6
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 2.2e-112 409.8 388 60.6
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 3.8e-112 409.1 375 60.8
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 6.4e-112 408.3 381 59.3
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 6.4e-112 408.3 376 59.8
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 8.4e-112 407.9 375 60.5
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.1e-111 407.5 375 60.5
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.4e-111 407.1 375 60.3
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 1.4e-111 407.1 384 61.7
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 1.4e-111 407.1 374 59.6
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 3.2e-111 406.0 416 57.5
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 3.2e-111 406.0 380 60.3
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 4.2e-111 405.6 381 59.1
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 7.1e-111 404.8 380 59.7
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 7.1e-111 404.8 422 55.9
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.2e-110 404.1 376 60.4
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 1.2e-110 404.1 377 59.9
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 3.5e-110 402.5 378 59.0
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 3.5e-110 402.5 407 57.7
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 3.5e-110 402.5 421 54.9
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 4.6e-110 402.1 374 58.8
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 7.9e-110 401.4 376 60.1
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 7.9e-110 401.4 376 58.5
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.8e-109 400.2 383 59.3
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 3.0e-109 399.4 375 58.9
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.9e-108 396.7 378 59.8
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 8.1e-107 391.3 382 58.4
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 8.1e-107 391.3 382 58.4
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 3.1e-106 389.4 377 57.6
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 2.0e-105 386.7 391 56.0
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 1.0e-104 384.4 384 58.1
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 2.9e-104 382.9 381 57.0
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 2.5e-103 379.8 383 56.9
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 5.5e-103 378.6 378 58.2
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 5.5e-103 378.6 378 57.7
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 1.2e-102 377.5 383 54.3
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 1.6e-102 377.1 367 59.4
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 2.1e-102 376.7 377 55.2
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 1.8e-101 373.6 395 52.7
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 1.8e-101 373.6 381 53.3
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 3.7e-99 365.9 380 55.5
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 6.3e-99 365.2 401 53.6
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 8.2e-99 364.8 379 55.7
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 1.1e-98 364.4 357 57.7
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 2.9e-96 356.3 381 55.9
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 3.8e-96 355.9 396 53.3
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 1.4e-95 354.0 392 53.6
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 1.2e-94 350.9 401 51.4
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 3.6e-94 349.4 399 51.9
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 1.3e-93 347.4 396 53.3
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 1.1e-92 344.4 405 50.1
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 1.1e-92 344.4 405 50.9
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 1.9e-92 343.6 395 52.9
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 5.7e-92 342.0 412 51.2
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 9.7e-92 341.3 392 52.0
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 2.8e-91 339.7 407 49.4
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 8.2e-91 338.2 423 50.1
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 1.4e-90 337.4 424 49.8
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 2.4e-90 336.7 418 49.3
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 2.4e-90 336.7 413 51.6
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 4.1e-90 335.9 398 50.8
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 5.3e-90 335.5 398 50.0
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 1.2e-89 334.3 419 49.6
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 2.6e-89 333.2 413 50.4
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 7.7e-89 331.6 425 46.4
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 1.3e-88 330.9 431 49.0
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 3.8e-88 329.3 369 53.7
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 7.2e-87 325.1 417 49.6
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 9.4e-87 324.7 424 48.3
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 1.2e-86 324.3 413 49.6
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 6.1e-86 322.0 348 53.2
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 4.4e-84 315.8 412 48.5
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 1.3e-83 314.3 386 51.3
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 5.3e-82 308.9 377 52.3
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 3.4e-81 306.2 336 53.3
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 5.9e-81 305.4 372 51.3
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 5.7e-76 288.9 439 43.3
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 8.5e-72 275.0 325 52.3
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 3.4e-52 209.9 213 55.4
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 3.4e-52 209.9 213 55.4
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 3.4e-52 209.9 213 55.4
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 9.8e-52 208.4 360 37.5
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 1.2e-49 201.4 492 35.0
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 2.7e-49 200.3 294 43.2
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 3.8e-48 196.4 412 35.9
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 4.7e-46 189.5 280 44.6
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 1.2e-41 174.9 547 30.0
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 6.6e-40 169.1 150 60.7
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 5.8e-36 156.0 378 36.8
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 8.3e-35 152.1 153 56.2
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 2.0e-33 147.5 407 33.7
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 1.3e-32 144.8 169 51.5
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 5.0e-32 142.9 150 54.0
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 5.2e-29 132.9 194 45.9
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 2.4e-26 124.0 311 34.4
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 2.9e-19 100.5 176 43.2
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 1.1e-18 98.6 381 30.4
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 1.1e-18 98.6 381 30.4
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 1.5e-15 88.2 106 49.1
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 6.9e-13 79.3 113 41.6
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 4.4e-12 76.6 45 80.0
AagrBONN_evm.TU.Sc2ySwM_344.4702 Anthoceros agrestis HOM05D005438 ORTHO05D006744 5.6e-07 59.7 130 35.4
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 4.8e-06 56.6 76 38.2


User provided reference genes

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