Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0011842 Lotus japonicus HOM05D006087 ORTHO05D007479 1.4e-50 202.6 100 100.0
Lalb_Chr12g0206161 Lupinus albus HOM05D006087 ORTHO05D007479 1.2e-38 162.9 97 82.5
TWI75G0102 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 3.1e-37 158.3 96 79.2
THA.LOC104812595 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 6.8e-37 157.1 96 78.1
Manes.12G011100 Manihot esculenta HOM05D006087 ORTHO05D007479 1.2e-36 156.4 97 81.4
TWI18G0911 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 1.5e-36 156.0 96 78.1
AT5G43260 Arabidopsis thaliana HOM05D006087 ORTHO05D007479 2.0e-36 155.6 97 77.3
CANSAT01G2640 Cannabis sativa HOM05D006087 ORTHO05D007479 2.0e-36 155.6 98 79.6
MELO3C011864.2 Cucumis melo HOM05D006087 ORTHO05D007479 2.0e-36 155.6 99 76.8
AL8G17230 Arabidopsis lyrata HOM05D006087 ORTHO05D007479 2.6e-36 155.2 97 76.3
Atru.chr11.2326 Acer truncatum HOM05D006087 ORTHO05D007479 3.4e-36 154.8 97 77.3
Eucgr.B03495 Eucalyptus grandis HOM05D006087 ORTHO05D007479 4.4e-36 154.5 98 77.6
Glyma.18G006400 Glycine max HOM05D006087 ORTHO05D007479 1.3e-35 152.9 97 77.3
TAR374G1631 Trochodendron aralioides HOM05D006087 ORTHO05D007479 1.3e-35 152.9 97 75.3
Carub.0008s0544 Capsella rubella HOM05D006087 ORTHO05D007479 1.7e-35 152.5 97 74.2
Sc04g0010140 Simmondsia chinensis HOM05D006087 ORTHO05D007479 2.2e-35 152.1 100 79.0
TWI36G1569 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 2.2e-35 152.1 96 76.0
Glyma.11G250700 Glycine max HOM05D006087 ORTHO05D007479 2.9e-35 151.8 97 76.3
Ah.03g136140 Amaranthus hybridus HOM05D006087 ORTHO05D007479 3.8e-35 151.4 93 78.5
CiPaw.05G109600 Carya illinoinensis HOM05D006087 ORTHO05D007479 3.8e-35 151.4 97 76.3
FAN12G1341 Fragaria x ananassa HOM05D006087 ORTHO05D007479 3.8e-35 151.4 97 74.2
FAN12G1854 Fragaria x ananassa HOM05D006087 ORTHO05D007479 3.8e-35 151.4 97 74.2
Phvul.001G262000 Phaseolus vulgaris HOM05D006087 ORTHO05D007479 3.8e-35 151.4 97 76.3
CsaV3_5G030260 Cucumis sativus L. HOM05D006087 ORTHO05D007479 6.4e-35 150.6 99 73.7
MD16G1119600 Malus domestica HOM05D006087 ORTHO05D007479 8.4e-35 150.2 99 76.8
RcHm_v2.0_Chr4g0430231 Rosa chinensis HOM05D006087 ORTHO05D007479 8.4e-35 150.2 97 74.2
Sp2g08050 Schrenkiella parvula HOM05D006087 ORTHO05D007479 8.4e-35 150.2 97 71.1
Ciclev10033174m.g Citrus clementina HOM05D006087 ORTHO05D007479 1.1e-34 149.8 97 75.3
A06p47950 Brassica napus HOM05D006087 ORTHO05D007479 1.4e-34 149.4 97 71.1
C07p25860 Brassica napus HOM05D006087 ORTHO05D007479 1.4e-34 149.4 97 71.1
BolC7t43103H Brassica oleracea HOM05D006087 ORTHO05D007479 1.4e-34 149.4 97 71.1
BraA06t27665Z Brassica rapa HOM05D006087 ORTHO05D007479 1.4e-34 149.4 97 71.1
FAN17G2012 Fragaria x ananassa HOM05D006087 ORTHO05D007479 1.9e-34 149.1 97 73.2
A09p20220 Brassica napus HOM05D006087 ORTHO05D007479 2.4e-34 148.7 97 70.1
Oeu036868.1 Olea europaea HOM05D006087 ORTHO05D007479 2.4e-34 148.7 98 75.5
Cc11_g16920 Coffea canephora HOM05D006087 ORTHO05D007479 3.2e-34 148.3 100 72.0
MD13G1119200 Malus domestica HOM05D006087 ORTHO05D007479 3.2e-34 148.3 99 77.8
FAN07G1634 Fragaria x ananassa HOM05D006087 ORTHO05D007479 4.2e-34 147.9 97 72.2
FAN22G0702 Fragaria x ananassa HOM05D006087 ORTHO05D007479 4.2e-34 147.9 97 72.2
CARHR180610 Cardamine hirsuta HOM05D006087 ORTHO05D007479 5.4e-34 147.5 97 75.3
Duzib251G0251 Durio zibethinus HOM05D006087 ORTHO05D007479 5.4e-34 147.5 99 76.8
EL10Ac6g13503 Beta vulgaris HOM05D006087 ORTHO05D007479 7.1e-34 147.1 93 76.3
Cfa009371 Carpinus fangiana HOM05D006087 ORTHO05D007479 7.1e-34 147.1 97 77.3
Haze_12421 Corylus avellana HOM05D006087 ORTHO05D007479 7.1e-34 147.1 97 77.3
CiPaw.06G102800 Carya illinoinensis HOM05D006087 ORTHO05D007479 9.2e-34 146.7 97 76.3
TAR622G0081 Trochodendron aralioides HOM05D006087 ORTHO05D007479 9.2e-34 146.7 99 73.7
Gohir.D12G152800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 1.2e-33 146.4 97 75.3
Gorai.008G165300 Gossypium raimondii HOM05D006087 ORTHO05D007479 1.2e-33 146.4 97 75.3
PGSC0003DMG400014051 Solanum tuberosum HOM05D006087 ORTHO05D007479 1.2e-33 146.4 99 74.7
QL03p052667 Quercus lobata HOM05D006087 ORTHO05D007479 1.6e-33 146.0 97 75.3
Aa31LG9G13330 Aethionema arabicum HOM05D006087 ORTHO05D007479 2.7e-33 145.2 97 75.3
Ca_16458_v3 Cicer arietinum L. HOM05D006087 ORTHO05D007479 2.7e-33 145.2 97 76.3
BcaC04g21941 Brassica carinata HOM05D006087 ORTHO05D007479 3.5e-33 144.8 97 68.0
C09p25630 Brassica napus HOM05D006087 ORTHO05D007479 3.5e-33 144.8 97 68.0
BolC9t55466H Brassica oleracea HOM05D006087 ORTHO05D007479 3.5e-33 144.8 97 68.0
SGA_v2.0_scaffold9G04680 Striga asiatica HOM05D006087 ORTHO05D007479 3.5e-33 144.8 100 70.0
BraA09t37633Z Brassica rapa HOM05D006087 ORTHO05D007479 4.6e-33 144.4 97 68.0
Psat5g096360 Pisum sativum HOM05D006087 ORTHO05D007479 6.0e-33 144.1 97 76.3
Thecc.02G208200 Theobroma cacao HOM05D006087 ORTHO05D007479 6.0e-33 144.1 100 75.0
TPR.G17782 Trifolium pratense HOM05D006087 ORTHO05D007479 6.0e-33 144.1 97 74.2
unitig_749.g13305 Utricularia gibba HOM05D006087 ORTHO05D007479 6.0e-33 144.1 98 71.4
Duzib248G0070 Durio zibethinus HOM05D006087 ORTHO05D007479 7.8e-33 143.7 97 74.2
Oeu004448.1 Olea europaea HOM05D006087 ORTHO05D007479 7.8e-33 143.7 97 74.2
Solyc05g015470.1 Solanum lycopersicum HOM05D006087 ORTHO05D007479 7.8e-33 143.7 99 73.7
Sopen05g010780 Solanum pennellii HOM05D006087 ORTHO05D007479 7.8e-33 143.7 99 73.7
COL.COLO4_20404 Corchorus olitorius HOM05D006087 ORTHO05D007479 1.3e-32 142.9 100 74.0
Prupe.1G225600 Prunus persica HOM05D006087 ORTHO05D007479 1.3e-32 142.9 99 75.8
CAN.G163.9 Capsicum annuum HOM05D006087 ORTHO05D007479 1.7e-32 142.5 99 71.7
Gohir.A12G148826 Gossypium hirsutum HOM05D006087 ORTHO05D007479 3.0e-32 141.7 97 74.2
Lsat_1_v5_gn_4_3481 Lactuca sativa HOM05D006087 ORTHO05D007479 3.0e-32 141.7 102 70.6
BcaB07g31021 Brassica carinata HOM05D006087 ORTHO05D007479 3.9e-32 141.4 97 66.0
Medtr3g085300 Medicago truncatula HOM05D006087 ORTHO05D007479 3.9e-32 141.4 98 72.4
Ah.02g130900 Amaranthus hybridus HOM05D006087 ORTHO05D007479 6.6e-32 140.6 93 72.0
CDE02G3899 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 8.7e-32 140.2 98 66.3
PSO017G6027 Papaver somniferum HOM05D006087 ORTHO05D007479 1.1e-31 139.8 97 69.1
PSO478G2574 Papaver somniferum HOM05D006087 ORTHO05D007479 1.1e-31 139.8 97 69.1
Gohir.D04G182800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 1.5e-31 139.4 97 72.2
Gorai.012G175800 Gossypium raimondii HOM05D006087 ORTHO05D007479 1.5e-31 139.4 97 72.2
Potri.001G056601 Populus trichocarpa HOM05D006087 ORTHO05D007479 1.9e-31 139.0 97 72.2
Nitab4.5_0001808g0020 Nicotiana tabacum HOM05D006087 ORTHO05D007479 2.1e-30 135.6 96 70.8
Gohir.A04G139600 Gossypium hirsutum HOM05D006087 ORTHO05D007479 2.8e-30 135.2 97 70.1
HanXRQChr10g0310621 Helianthus annuus HOM05D006087 ORTHO05D007479 2.8e-30 135.2 98 69.4
Actinidia20712 Actinidia chinensis HOM05D006087 ORTHO05D007479 6.2e-30 134.0 97 69.1
ATR0561G204 Amborella trichopoda HOM05D006087 ORTHO05D007479 1.1e-29 133.3 98 68.4
Hma1.2p1_0065F.1_g035460 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 1.1e-29 133.3 99 68.7
Potri.003G171800 Populus trichocarpa HOM05D006087 ORTHO05D007479 4.0e-29 131.3 100 70.0
MELO3C010741.2 Cucumis melo HOM05D006087 ORTHO05D007479 5.3e-29 131.0 96 64.6
Nitab4.5_0000039g0180 Nicotiana tabacum HOM05D006087 ORTHO05D007479 5.3e-29 131.0 96 67.7
ECA234G0111 Erigeron canadensis HOM05D006087 ORTHO05D007479 9.0e-29 130.2 87 72.4
THA.LOC104820522 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 9.0e-29 130.2 96 67.7
Duzib268G0474 Durio zibethinus HOM05D006087 ORTHO05D007479 1.5e-28 129.4 100 69.0
Cpa.g.sc43.59 Carica papaya HOM05D006087 ORTHO05D007479 2.6e-28 128.6 96 69.8
AUR62005621 Chenopodium quinoa HOM05D006087 ORTHO05D007479 2.6e-28 128.6 96 65.6
Lalb_Chr23g0278081 Lupinus albus HOM05D006087 ORTHO05D007479 3.4e-28 128.3 97 69.1
Migut.K00735 Erythranthe guttata HOM05D006087 ORTHO05D007479 5.8e-28 127.5 98 66.3
AUR62028927 Chenopodium quinoa HOM05D006087 ORTHO05D007479 7.6e-28 127.1 96 65.6
Aqoxy5G03370 Aquilegia oxysepala HOM05D006087 ORTHO05D007479 2.2e-27 125.6 95 70.5
Mapoly0062s0032 Marchantia polymorpha HOM05D006087 ORTHO05D007479 2.9e-27 125.2 88 67.0
Rhsim12G0025700 Rhododendron simsii HOM05D006087 ORTHO05D007479 4.9e-27 124.4 100 66.0
THA.LOC104825505 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.9e-26 122.5 100 64.0
THA.LOC104807129 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 3.2e-26 121.7 100 64.0
arahy.Tifrunner.gnm1.ann1.1Z01XL Arachis hypogaea HOM05D006087 ORTHO05D007479 2.1e-25 119.0 100 65.0
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 6.0e-25 117.5 82 67.1
Migut.E00016 Erythranthe guttata HOM05D006087 ORTHO05D007479 2.3e-24 115.5 95 58.9
CSS0016505 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 3.0e-24 115.2 86 70.9
CSS0027394 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 3.0e-24 115.2 86 70.9
PGR102G3303 Punica granatum HOM05D006087 ORTHO05D007479 3.0e-24 115.2 97 63.9
MSTRG.8005 Avicennia marina HOM05D006087 ORTHO05D007479 8.7e-24 113.6 99 59.6
ClCG08G017160 Citrullus lanatus HOM05D006087 ORTHO05D007479 4.3e-23 111.3 96 57.3
MBI11_g44422_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 7.3e-23 110.5 101 63.4
MD05G1114700 Malus domestica HOM05D006087 ORTHO05D007479 1.3e-22 109.8 80 67.5
CsaV3_2G025430 Cucumis sativus L. HOM05D006087 ORTHO05D007479 3.6e-22 108.2 79 65.8
Pp3c22_5660 Physcomitrium patens HOM05D006087 ORTHO05D007479 4.8e-22 107.8 100 55.0
HPP92_024307 Vanilla planifolia HOM05D006087 ORTHO05D007479 8.1e-22 107.1 94 62.8
Sed0007875 Sechium edule HOM05D006087 ORTHO05D007479 1.8e-21 105.9 97 54.6
HPP92_024290 Vanilla planifolia HOM05D006087 ORTHO05D007479 2.4e-21 105.5 93 61.3
Pp3c18_21810 Physcomitrium patens HOM05D006087 ORTHO05D007479 9.0e-21 103.6 104 52.9
MBI11_g05327_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 4.5e-20 101.3 70 74.3
Pp3c14_11460 Physcomitrium patens HOM05D006087 ORTHO05D007479 5.8e-20 100.9 99 53.5
Pp3c21_520 Physcomitrium patens HOM05D006087 ORTHO05D007479 5.8e-20 100.9 98 51.0
Zm00001eb241730 Zea mays HOM05D006087 ORTHO05D007479 1.2e-17 93.2 95 50.5
Pp3c17_7480 Physcomitrium patens HOM05D006087 ORTHO05D007479 3.5e-17 91.7 98 48.0
Os02g0506600 Oryza sativa ssp. japonica HOM05D006087 ORTHO05D007479 3.0e-16 88.6 100 50.0
Zm00001eb180950 Zea mays HOM05D006087 ORTHO05D007479 3.0e-16 88.6 101 48.5
Hma1.2p1_0349F.1_g132260 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 1.3e-14 83.2 97 52.6
Cre10.g432100 Chlamydomonas reinhardtii HOM05D006087 ORTHO05D007479 3.2e-10 68.6 88 42.0
Zm00001eb421040 Zea mays HOM05D006087 ORTHO05D007479 3.2e-10 68.6 101 45.5
MD16G1189100 Malus domestica HOM05D006087 ORTHO05D007479 3.3e-07 58.5 39 64.1
CDE05G3495 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 9.6e-07 57.0 57 52.6


User provided reference genes

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