Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0011610 Lotus japonicus HOM05D007451 ORTHO05D009399 5.1e-100 367.9 200 100.0
VMungo0251G0908 Vigna mungo HOM05D007451 ORTHO05D009399 1.2e-53 213.8 170 67.1
Medtr4g084470 Medicago truncatula HOM05D007451 ORTHO05D009399 8.8e-52 207.6 154 71.4
Phvul.002G096800 Phaseolus vulgaris HOM05D007451 ORTHO05D009399 2.0e-51 206.5 166 65.7
arahy.Tifrunner.gnm1.ann1.ZU2BT9 Arachis hypogaea HOM05D007451 ORTHO05D009399 5.7e-51 204.9 160 69.4
Psat7g130000 Pisum sativum HOM05D007451 ORTHO05D009399 4.8e-50 201.8 154 70.8
arahy.Tifrunner.gnm1.ann1.Z8IVUX Arachis hypogaea HOM05D007451 ORTHO05D009399 1.1e-46 190.7 181 60.8
Glyma.07G220100 Glycine max HOM05D007451 ORTHO05D009399 4.7e-37 158.7 167 52.7
Manes.17G070400 Manihot esculenta HOM05D007451 ORTHO05D009399 5.2e-36 155.2 165 52.7
RcHm_v2.0_Chr5g0014241 Rosa chinensis HOM05D007451 ORTHO05D009399 2.9e-34 149.4 161 50.3
Lalb_Chr16g0385141 Lupinus albus HOM05D007451 ORTHO05D009399 5.4e-33 145.2 159 54.7
Potri.004G132600 Populus trichocarpa HOM05D007451 ORTHO05D009399 7.0e-33 144.8 161 48.4
FAN21G0862 Fragaria x ananassa HOM05D007451 ORTHO05D009399 2.0e-32 143.3 167 49.1
TAR624G0819 Trochodendron aralioides HOM05D007451 ORTHO05D009399 1.0e-31 141.0 172 48.8
GSVIVG01021497001 Vitis vinifera HOM05D007451 ORTHO05D009399 1.7e-31 140.2 169 47.9
CiPaw.10G091600 Carya illinoinensis HOM05D007451 ORTHO05D009399 5.0e-31 138.7 156 49.4
Rhsim02G0158600 Rhododendron simsii HOM05D007451 ORTHO05D009399 8.6e-31 137.9 160 45.0
Hma1.2p1_0286F.1_g114180 Hydrangea macrophylla HOM05D007451 ORTHO05D009399 1.1e-30 137.5 161 49.1
Thecc.06G150100 Theobroma cacao HOM05D007451 ORTHO05D009399 1.1e-30 137.5 160 46.9
CANSAT35G1195 Cannabis sativa HOM05D007451 ORTHO05D009399 9.5e-30 134.4 152 48.0
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 2.8e-29 132.9 152 50.7
Lj1C1189G10 Lonicera japonica HOM05D007451 ORTHO05D009399 2.8e-29 132.9 159 47.8
Oeu031273.1 Olea europaea HOM05D007451 ORTHO05D009399 2.3e-28 129.8 161 46.6
TPR.G38261 Trifolium pratense HOM05D007451 ORTHO05D009399 8.9e-28 127.9 96 66.7
Nitab4.5_0003044g0100 Nicotiana tabacum HOM05D007451 ORTHO05D009399 1.2e-27 127.5 161 47.2
HanXRQChr04g0114281 Helianthus annuus HOM05D007451 ORTHO05D009399 2.6e-27 126.3 161 44.7
TWI73G0492 Tripterygium wilfordii HOM05D007451 ORTHO05D009399 3.4e-27 125.9 174 42.5
Ciclev10018276m.g Citrus clementina HOM05D007451 ORTHO05D009399 9.8e-27 124.4 165 44.8
MBI07_g23439_MAGBIO Magnolia biondii HOM05D007451 ORTHO05D009399 2.2e-26 123.2 165 42.4
Sc17g0004890 Simmondsia chinensis HOM05D007451 ORTHO05D009399 4.9e-26 122.1 153 43.8
Glyma.20G018400 Glycine max HOM05D007451 ORTHO05D009399 6.4e-26 121.7 95 64.2
Prupe.4G081100 Prunus persica HOM05D007451 ORTHO05D009399 1.4e-25 120.6 159 44.7
CSS0015635 Camellia sinensis var. sinensis HOM05D007451 ORTHO05D009399 2.4e-25 119.8 183 43.2
Actinidia07699 Actinidia chinensis HOM05D007451 ORTHO05D009399 3.2e-25 119.4 163 44.2
Lsat_1_v5_gn_7_28421 Lactuca sativa HOM05D007451 ORTHO05D009399 3.2e-25 119.4 165 43.0
CSS0045800 Camellia sinensis var. sinensis HOM05D007451 ORTHO05D009399 4.1e-25 119.0 149 46.3
Sabra04G0085400 Salix brachista HOM05D007451 ORTHO05D009399 3.5e-24 115.9 126 49.2
ECA246G3905 Erigeron canadensis HOM05D007451 ORTHO05D009399 4.6e-24 115.5 161 41.0
PSO541G4911 Papaver somniferum HOM05D007451 ORTHO05D009399 7.8e-24 114.8 164 39.6
FAN11G0575 Fragaria x ananassa HOM05D007451 ORTHO05D009399 1.0e-23 114.4 148 43.9
vmacro10960 Vaccinium macrocarpon HOM05D007451 ORTHO05D009399 1.5e-22 110.5 117 52.1
PSO675G9053 Papaver somniferum HOM05D007451 ORTHO05D009399 2.5e-22 109.8 161 39.8
MD05G1283500 Malus domestica HOM05D007451 ORTHO05D009399 7.3e-22 108.2 164 39.6
Aqoxy1G01697 Aquilegia oxysepala HOM05D007451 ORTHO05D009399 9.5e-22 107.8 159 41.5
CAN.G65.121 Capsicum annuum HOM05D007451 ORTHO05D009399 1.2e-21 107.5 161 42.9
EL10Ac8g19670 Beta vulgaris HOM05D007451 ORTHO05D009399 1.6e-21 107.1 160 41.9
Gohir.D10G042000 Gossypium hirsutum HOM05D007451 ORTHO05D009399 3.6e-21 105.9 161 39.8
Gorai.011G044600 Gossypium raimondii HOM05D007451 ORTHO05D009399 3.6e-21 105.9 161 39.8
EL10Ac8g19669 Beta vulgaris HOM05D007451 ORTHO05D009399 4.7e-21 105.5 160 41.9
Nitab4.5_0003838g0080 Nicotiana tabacum HOM05D007451 ORTHO05D009399 4.7e-21 105.5 161 42.2
Peaxi162Scf00443g00210 Petunia axillaris HOM05D007451 ORTHO05D009399 4.7e-21 105.5 119 51.3
Nn4g26566 Nelumbo nucifera HOM05D007451 ORTHO05D009399 5.2e-20 102.1 161 42.2
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 9.9e-19 97.8 135 43.7
Cfa000938 Carpinus fangiana HOM05D007451 ORTHO05D009399 1.7e-18 97.1 153 38.6
Haze_05609 Corylus avellana HOM05D007451 ORTHO05D009399 4.9e-18 95.5 108 48.1
FvH4_3g05500 Fragaria vesca HOM05D007451 ORTHO05D009399 6.4e-18 95.1 159 37.1
Gohir.A10G041200 Gossypium hirsutum HOM05D007451 ORTHO05D009399 1.2e-16 90.9 141 39.7
arahy.Tifrunner.gnm1.ann1.WBAN0Y Arachis hypogaea HOM05D007451 ORTHO05D009399 1.6e-16 90.5 94 52.1
AL4G30550 Arabidopsis lyrata HOM05D007451 ORTHO05D009399 2.1e-16 90.1 107 41.1
Gorai.008G053800 Gossypium raimondii HOM05D007451 ORTHO05D009399 2.1e-16 90.1 161 36.6
Thhalv10017344m.g Eutrema salsugineum HOM05D007451 ORTHO05D009399 1.0e-15 87.8 111 41.4
QL05p057933 Quercus lobata HOM05D007451 ORTHO05D009399 1.0e-15 87.8 171 35.7
Carub.0004s1625 Capsella rubella HOM05D007451 ORTHO05D009399 3.9e-15 85.9 107 40.2
BcaC02g11529 Brassica carinata HOM05D007451 ORTHO05D009399 6.6e-15 85.1 107 41.1
BolC4t23021H Brassica oleracea HOM05D005261 ORTHO05D006180 6.6e-15 85.1 107 41.1
AT2G34580 Arabidopsis thaliana HOM05D007451 ORTHO05D009399 8.6e-15 84.7 107 39.3
BraA05t20052Z Brassica rapa HOM05D007451 ORTHO05D009399 1.9e-14 83.6 107 40.2
Sp4g16840 Schrenkiella parvula HOM05D007451 ORTHO05D009399 2.5e-14 83.2 107 39.3
A05p11060 Brassica napus HOM05D005261 ORTHO05D006180 4.3e-14 82.4 107 39.3
CARHR128670 Cardamine hirsuta HOM05D007451 ORTHO05D009399 5.6e-14 82.0 113 38.1
Eucgr.E03355 Eucalyptus grandis HOM05D007451 ORTHO05D009399 9.5e-14 81.3 97 43.3
BcaB02g09525 Brassica carinata HOM05D007451 ORTHO05D009399 1.6e-13 80.5 107 38.3
Eucgr.B02066 Eucalyptus grandis HOM05D007451 ORTHO05D009399 3.6e-13 79.3 96 43.8
CDE02G3067 Ceratophyllum demersum HOM05D007451 ORTHO05D009399 1.8e-12 77.0 128 35.2
TPR.G40722 Trifolium pratense HOM05D007451 ORTHO05D009399 5.2e-12 75.5 55 74.5
arahy.Tifrunner.gnm1.ann1.D76417 Arachis hypogaea HOM05D007451 ORTHO05D009399 2.0e-11 73.6 105 43.8
Eucgr.J01485 Eucalyptus grandis HOM05D007451 ORTHO05D009399 3.4e-11 72.8 137 36.5
Eucgr.C02335 Eucalyptus grandis HOM05D007451 ORTHO05D009399 9.9e-11 71.2 84 45.2
AUR62002741 Chenopodium quinoa HOM05D007451 ORTHO05D009399 1.7e-10 70.5 153 32.7
AUR62030193 Chenopodium quinoa HOM05D007451 ORTHO05D009399 2.2e-10 70.1 153 31.4
AUR62002733 Chenopodium quinoa HOM05D007451 ORTHO05D009399 6.4e-10 68.6 153 32.0
Eucgr.I02284 Eucalyptus grandis HOM05D007451 ORTHO05D009399 4.1e-09 65.9 97 38.1
Gohir.D12G050550 Gossypium hirsutum HOM05D007451 ORTHO05D009399 4.6e-08 62.4 108 34.3
Cc10_g10170 Coffea canephora HOM05D007451 ORTHO05D009399 1.0e-07 61.2 97 32.0
MBI06_g46402_MAGBIO Magnolia biondii HOM05D000482 ORTHO05D000349 1.3e-07 60.8 93 38.7
THA.LOC104814695 Tarenaya hassleriana HOM05D007451 ORTHO05D009399 3.0e-07 59.7 114 31.6
Gorai.004G185100 Gossypium raimondii HOM05D007451 ORTHO05D009399 1.1e-06 57.8 108 33.3
Ah.16g109120 Amaranthus hybridus HOM05D007451 ORTHO05D009399 3.3e-06 56.2 111 34.2
C04p14410 Brassica napus HOM05D007451 ORTHO05D009399 4.3e-06 55.8 107 30.8


User provided reference genes

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