Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0010877 Lotus japonicus HOM05D007342 ORTHO05D009252 0.0e+00 1167.1 619 100.0
Medtr4g119920 Medicago truncatula HOM05D007342 ORTHO05D009252 1.2e-155 554.3 623 58.6
Glyma.07G247200 Glycine max HOM05D007342 ORTHO05D009252 1.4e-151 540.8 625 55.2
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 8.6e-146 521.5 576 58.0
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 9.5e-145 518.1 627 53.3
Phvul.003G105800 Phaseolus vulgaris HOM05D007342 ORTHO05D009252 1.4e-143 514.2 636 52.8
TPR.G3194 Trifolium pratense HOM05D007342 ORTHO05D009252 8.3e-141 505.0 625 55.7
Glyma.17G026800 Glycine max HOM05D007342 ORTHO05D009252 1.8e-135 487.3 635 52.4
Lalb_Chr12g0196601 Lupinus albus HOM05D007342 ORTHO05D009252 3.4e-134 483.0 637 50.9
arahy.Tifrunner.gnm1.ann1.4CZB08 Arachis hypogaea HOM05D007342 ORTHO05D009252 1.2e-123 448.0 646 48.3
arahy.Tifrunner.gnm1.ann1.0PW7WM Arachis hypogaea HOM05D007342 ORTHO05D009252 1.2e-120 438.0 650 47.5
Psat4g027440 Pisum sativum HOM05D007342 ORTHO05D009252 5.1e-114 416.0 702 44.9
Haze_01197 Corylus avellana HOM05D007342 ORTHO05D009252 1.1e-84 318.5 635 41.6
Cfa015389 Carpinus fangiana HOM05D007342 ORTHO05D009252 5.5e-84 316.2 624 39.7
TWI53G0473 Tripterygium wilfordii HOM05D007342 ORTHO05D009252 6.2e-80 302.8 642 37.7
QL06p008994 Quercus lobata HOM05D007342 ORTHO05D009252 3.5e-75 287.0 630 37.6
Prupe.1G135700 Prunus persica HOM05D007342 ORTHO05D009252 7.9e-75 285.8 630 37.3
Potri.008G222000 Populus trichocarpa HOM05D007342 ORTHO05D009252 4.2e-68 263.5 635 36.2
Duzib212G0754 Durio zibethinus HOM05D007342 ORTHO05D009252 6.1e-67 259.6 633 37.3
MD13G1168100 Malus domestica HOM05D007342 ORTHO05D009252 8.8e-66 255.8 625 34.9
CANSAT78G2360 Cannabis sativa HOM05D007342 ORTHO05D009252 4.1e-63 246.9 640 35.6
Gorai.006G262500 Gossypium raimondii HOM05D007342 ORTHO05D009252 5.3e-63 246.5 599 36.6
FAN17G1678 Fragaria x ananassa HOM05D007342 ORTHO05D009252 9.1e-63 245.7 624 34.9
RcHm_v2.0_Chr4g0422351 Rosa chinensis HOM05D007342 ORTHO05D009252 1.2e-62 245.4 608 34.2
FAN12G0202 Fragaria x ananassa HOM05D007342 ORTHO05D009252 4.5e-62 243.4 589 35.5
FvH4_4g18220 Fragaria vesca HOM05D007342 ORTHO05D009252 1.7e-61 241.5 590 34.6
FAN12G3549 Fragaria x ananassa HOM05D007342 ORTHO05D009252 1.7e-61 241.5 590 34.6
Ciclev10004639m.g Citrus clementina HOM05D007342 ORTHO05D009252 5.0e-61 240.0 648 32.6
GSVIVG01017735001 Vitis vinifera HOM05D007342 ORTHO05D009252 1.1e-60 238.8 628 34.7
CiPaw.01G148300 Carya illinoinensis HOM05D007342 ORTHO05D009252 2.5e-60 237.7 424 41.7
Dinv29744 Davidia involucrata HOM05D007342 ORTHO05D009252 5.5e-60 236.5 649 33.6
Cpa.g.sc16.174 Carica papaya HOM05D007342 ORTHO05D009252 3.6e-59 233.8 645 34.1
ClCG06G005120 Citrullus lanatus HOM05D007342 ORTHO05D009252 3.6e-59 233.8 643 33.9
COL.COLO4_13866 Corchorus olitorius HOM05D007342 ORTHO05D009252 3.6e-59 233.8 603 35.7
Gohir.D09G239700 Gossypium hirsutum HOM05D007342 ORTHO05D009252 1.4e-58 231.9 626 34.8
Sabra08G0152900 Salix brachista HOM05D007342 ORTHO05D009252 1.4e-58 231.9 652 34.8
Thecc.04G285100 Theobroma cacao HOM05D007342 ORTHO05D009252 1.8e-58 231.5 601 33.9
Actinidia00019 Actinidia chinensis HOM05D007342 ORTHO05D009252 2.6e-57 227.6 662 33.5
MSTRG.10096 Avicennia marina HOM05D007342 ORTHO05D009252 9.7e-57 225.7 614 32.9
Actinidia14301 Actinidia chinensis HOM05D007342 ORTHO05D009252 1.1e-52 212.2 656 31.6
PGR031G1889 Punica granatum HOM05D007342 ORTHO05D009252 1.1e-52 212.2 620 32.9
Nn4g25834 Nelumbo nucifera HOM05D007342 ORTHO05D009252 2.7e-51 207.6 666 33.8
MELO3C021329.2 Cucumis melo HOM05D007342 ORTHO05D009252 4.7e-51 206.8 631 31.7
Lalb_Chr07g0177731 Lupinus albus HOM05D007342 ORTHO05D009252 2.6e-49 201.1 229 53.7
CSS0019788 Camellia sinensis var. sinensis HOM05D007342 ORTHO05D009252 4.4e-49 200.3 614 32.2
Nitab4.5_0000191g0200 Nicotiana tabacum HOM05D007342 ORTHO05D009252 7.4e-49 199.5 726 30.4
Aqoxy5G00727 Aquilegia oxysepala HOM05D007342 ORTHO05D009252 3.7e-48 197.2 655 32.4
Nitab4.5_0000059g0470 Nicotiana tabacum HOM05D007342 ORTHO05D009252 3.1e-47 194.1 722 29.1
Gohir.A09G238800 Gossypium hirsutum HOM05D007342 ORTHO05D009252 9.1e-47 192.6 560 32.7
Eucgr.B01323 Eucalyptus grandis HOM05D007342 ORTHO05D009252 5.0e-45 186.8 601 32.1
Cc03_g01870 Coffea canephora HOM05D007342 ORTHO05D009252 1.5e-44 185.3 647 31.2
Thhalv10025032m.g Eutrema salsugineum HOM05D007342 ORTHO05D009252 1.5e-44 185.3 592 30.6
ECA240G4261 Erigeron canadensis HOM05D007342 ORTHO05D009252 3.2e-44 184.1 639 30.5
Carub.0007s2583 Capsella rubella HOM05D007342 ORTHO05D009252 7.2e-44 183.0 591 31.0
Peaxi162Scf01123g00234 Petunia axillaris HOM05D007342 ORTHO05D009252 2.1e-43 181.4 617 32.4
Sopen01g030760 Solanum pennellii HOM05D007342 ORTHO05D009252 2.1e-43 181.4 706 30.3
Atru.chr4.2846 Acer truncatum HOM05D007342 ORTHO05D009252 1.8e-42 178.3 559 30.9
AL7G39470 Arabidopsis lyrata HOM05D007342 ORTHO05D009252 5.2e-42 176.8 593 31.0
Manes.03G195600 Manihot esculenta HOM05D007342 ORTHO05D009252 6.7e-42 176.4 587 31.9
CARHR290340 Cardamine hirsuta HOM05D007342 ORTHO05D009252 1.5e-41 175.3 620 30.8
Migut.G00157 Erythranthe guttata HOM05D007342 ORTHO05D009252 1.5e-41 175.3 600 31.8
PGSC0003DMG400006281 Solanum tuberosum HOM05D007342 ORTHO05D009252 3.3e-41 174.1 692 29.3
TAR633G2120 Trochodendron aralioides HOM05D007342 ORTHO05D009252 4.8e-40 170.2 285 40.0
THA.LOC104820266 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 6.3e-40 169.9 598 30.3
BraA03t14036Z Brassica rapa HOM05D007342 ORTHO05D009252 4.5e-38 163.7 627 30.0
Solyc01g080760.4 Solanum lycopersicum HOM05D007342 ORTHO05D009252 5.9e-38 163.3 712 30.9
BcaC06g33445 Brassica carinata HOM05D007342 ORTHO05D009252 6.5e-37 159.8 627 29.8
C07p47420 Brassica napus HOM05D007342 ORTHO05D009252 6.5e-37 159.8 627 29.8
BolC7t45269H Brassica oleracea HOM05D007342 ORTHO05D009252 6.5e-37 159.8 627 29.8
DCAR_023285 Daucus carota HOM05D007342 ORTHO05D009252 1.9e-36 158.3 626 30.4
A03p49350 Brassica napus HOM05D007342 ORTHO05D009252 7.2e-36 156.4 627 30.3
AT4G15820 Arabidopsis thaliana HOM05D007342 ORTHO05D009252 2.7e-35 154.5 522 29.5
Sp7g14200 Schrenkiella parvula HOM05D007342 ORTHO05D009252 3.6e-35 154.1 634 30.9
Lsat_1_v5_gn_5_56841 Lactuca sativa HOM05D007342 ORTHO05D009252 1.0e-34 152.5 604 29.1
PSO210G2737 Papaver somniferum HOM05D007342 ORTHO05D009252 4.0e-34 150.6 647 30.9
Hund19378 Selenicereus undatus HOM05D007342 ORTHO05D009252 4.0e-34 150.6 645 29.0
Aa31LG10G6280 Aethionema arabicum HOM05D007342 ORTHO05D009252 4.4e-33 147.1 599 29.0
SalBow2G3523 Salvia bowleyana HOM05D007342 ORTHO05D009252 9.8e-33 146.0 591 30.6
PSO832G2203 Papaver somniferum HOM05D007342 ORTHO05D009252 1.4e-31 142.1 505 31.7
AUR62020686 Chenopodium quinoa HOM05D007342 ORTHO05D009252 2.4e-31 141.4 659 29.7
Sc19g0005330 Simmondsia chinensis HOM05D007342 ORTHO05D009252 3.1e-31 141.0 597 29.1
unitig_37.g12398 Utricularia gibba HOM05D007342 ORTHO05D009252 4.1e-31 140.6 641 30.9
MBI18_g13693_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 7.0e-31 139.8 524 30.3
SGA_v2.0_scaffold67G22631 Striga asiatica HOM05D007342 ORTHO05D009252 5.0e-29 133.7 608 28.6
AUR62028039 Chenopodium quinoa HOM05D007342 ORTHO05D009252 1.9e-28 131.7 648 30.2
ATR0796G152 Amborella trichopoda HOM05D007342 ORTHO05D009252 1.2e-27 129.0 701 26.8
MBI18_g13694_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 6.1e-27 126.7 706 28.9
BcaC06g32967 Brassica carinata HOM05D007342 ORTHO05D009252 8.0e-27 126.3 230 38.3
Rhsim02G0008900 Rhododendron simsii HOM05D007342 ORTHO05D009252 1.4e-26 125.6 264 37.5
CDE02G3410 Ceratophyllum demersum HOM05D007342 ORTHO05D009252 2.6e-25 121.3 136 50.0
Oeu045723.1 Olea europaea HOM05D007342 ORTHO05D009252 9.8e-25 119.4 262 38.2
THA.LOC104820268 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 2.2e-24 118.2 121 51.2
vmacro15234 Vaccinium macrocarpon HOM05D007342 ORTHO05D009252 1.3e-21 109.0 176 44.3
SEGI_31295 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 4.3e-20 104.0 140 42.9
Lj3P820T26 Lonicera japonica HOM05D007342 ORTHO05D009252 8.0e-19 99.8 428 32.0
THA.LOC104810667 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 8.0e-19 99.8 109 48.6
THA.LOC104820435 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.0e-18 99.4 111 47.7
Lj3P817T41 Lonicera japonica HOM05D007342 ORTHO05D009252 2.9e-16 91.3 314 32.5
CsaV3_6G022280 Cucumis sativus L. HOM05D007342 ORTHO05D009252 4.9e-16 90.5 422 31.0
HPP92_016942 Vanilla planifolia HOM05D007342 ORTHO05D009252 8.3e-16 89.7 477 26.6
Sed0007886 Sechium edule HOM05D007342 ORTHO05D009252 9.2e-15 86.3 384 31.5
DCAR_023500 Daucus carota HOM05D007342 ORTHO05D009252 6.0e-14 83.6 314 29.9
Mapoly0008s0022 Marchantia polymorpha HOM05D005676 ORTHO05D007375 1.1e-12 79.3 123 39.0
Pp3c12_1870 Physcomitrium patens HOM05D005676 ORTHO05D007375 1.6e-11 75.5 137 34.3
BcaC06g32966 Brassica carinata HOM05D007342 ORTHO05D009252 2.3e-10 71.6 199 34.7
Eucgr.L03117 Eucalyptus grandis HOM05D007342 ORTHO05D009252 1.5e-09 68.9 365 29.3
Thecc.01G342000 Theobroma cacao HOM05D005676 ORTHO05D007375 2.6e-09 68.2 119 31.9
CDE02G4093 Ceratophyllum demersum HOM05D005676 ORTHO05D007375 5.8e-09 67.0 119 29.4
Manes.01G246200 Manihot esculenta HOM05D005676 ORTHO05D007375 9.8e-09 66.2 119 31.9
ClCG05G000790 Citrullus lanatus HOM05D005676 ORTHO05D007375 1.3e-08 65.9 119 32.8
Actinidia10141 Actinidia chinensis HOM05D005676 ORTHO05D007375 2.2e-08 65.1 119 32.8
Dinv32595 Davidia involucrata HOM05D005676 ORTHO05D007375 2.9e-08 64.7 119 31.1
HanXRQChr11g0352981 Helianthus annuus HOM05D005676 ORTHO05D007375 2.9e-08 64.7 118 31.4
Cc02_g39430 Coffea canephora HOM05D005676 ORTHO05D007375 3.7e-08 64.3 119 32.8
DCAR_005392 Daucus carota HOM05D005676 ORTHO05D007375 4.9e-08 63.9 119 31.1
CAN.G1415.28 Capsicum annuum HOM05D005676 ORTHO05D007375 6.4e-08 63.5 119 31.9
Sed0007378 Sechium edule HOM05D005676 ORTHO05D007375 8.3e-08 63.2 119 31.9
EL10Ac1g00264 Beta vulgaris HOM05D005676 ORTHO05D007375 1.1e-07 62.8 119 31.1
SalBow6G4948 Salvia bowleyana HOM05D005676 ORTHO05D007375 1.1e-07 62.8 119 31.1
SEGI_23777 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 1.1e-07 62.8 110 35.5
Aqoxy7G00081 Aquilegia oxysepala HOM05D005676 ORTHO05D007375 1.4e-07 62.4 119 31.1
MSTRG.17345 Avicennia marina HOM05D005676 ORTHO05D007375 1.4e-07 62.4 119 30.3
FvH4_7g16470 Fragaria vesca HOM05D005676 ORTHO05D007375 1.4e-07 62.4 119 30.3
FAN03G1248 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.4e-07 62.4 119 30.3
FAN06G1134 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.4e-07 62.4 119 30.3
FAN06G4290 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.4e-07 62.4 119 30.3
Nitab4.5_0013740g0030 Nicotiana tabacum HOM05D005676 ORTHO05D007375 1.4e-07 62.4 119 31.1
PGSC0003DMG400000228 Solanum tuberosum HOM05D005676 ORTHO05D007375 1.4e-07 62.4 119 31.9
CsaV3_3G008030 Cucumis sativus L. HOM05D005676 ORTHO05D007375 1.9e-07 62.0 119 31.9
Nitab4.5_0000172g0490 Nicotiana tabacum HOM05D005676 ORTHO05D007375 1.9e-07 62.0 119 31.1
QL04p060782 Quercus lobata HOM05D005676 ORTHO05D007375 1.9e-07 62.0 119 30.3
RcHm_v2.0_Chr1g0359591 Rosa chinensis HOM05D005676 ORTHO05D007375 1.9e-07 62.0 119 30.3
CSS0030996 Camellia sinensis var. sinensis HOM05D005676 ORTHO05D007375 2.4e-07 61.6 119 30.3
Duzib268G0021 Durio zibethinus HOM05D005676 ORTHO05D007375 3.2e-07 61.2 119 29.4
Eucgr.D02379 Eucalyptus grandis HOM05D005676 ORTHO05D007375 3.2e-07 61.2 119 29.4
Phvul.010G114600 Phaseolus vulgaris HOM05D005676 ORTHO05D007375 3.2e-07 61.2 119 30.3
Gohir.A11G096900 Gossypium hirsutum HOM05D005676 ORTHO05D007375 4.1e-07 60.8 119 30.3
Gorai.007G108400 Gossypium raimondii HOM05D005676 ORTHO05D007375 4.1e-07 60.8 119 30.3
SalBow3G4648 Salvia bowleyana HOM05D005676 ORTHO05D007375 5.4e-07 60.5 119 31.1
MELO3C006021.2 Cucumis melo HOM05D005676 ORTHO05D007375 7.0e-07 60.1 119 30.3
PGR031G0643 Punica granatum HOM05D005676 ORTHO05D007375 7.0e-07 60.1 119 30.3
Lalb_Chr17g0342721 Lupinus albus HOM05D005676 ORTHO05D007375 1.2e-06 59.3 119 29.4
MD01G1081300 Malus domestica HOM05D005676 ORTHO05D007375 1.2e-06 59.3 119 30.3
Lj9A598G65 Lonicera japonica HOM05D005676 ORTHO05D007375 1.6e-06 58.9 127 27.6
Nn1g00247 Nelumbo nucifera HOM05D005676 ORTHO05D007375 1.6e-06 58.9 119 28.6
AagrBONN_evm.TU.Sc2ySwM_368.2853 Anthoceros agrestis HOM05D005676 ORTHO05D007375 2.1e-06 58.5 353 24.4
VMungo0331G0849 Vigna mungo HOM05D005676 ORTHO05D007375 3.5e-06 57.8 119 29.4
ECA246G1832 Erigeron canadensis HOM05D000467 ORTHO05D000379 6.0e-06 57.0 125 29.6
Sc01g0002640 Simmondsia chinensis HOM05D005676 ORTHO05D007375 7.8e-06 56.6 119 29.4


User provided reference genes

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