Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0010390 Lotus japonicus HOM05D008992 ORTHO05D002272 1.6e-169 599.4 312 100.0
Ca_03843_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 7.5e-58 228.4 264 51.5
Lj4g0011648 Lotus japonicus HOM05D008992 ORTHO05D002272 9.2e-56 221.5 203 64.0
TPR.G6199 Trifolium pratense HOM05D008992 ORTHO05D002272 1.5e-50 204.1 245 49.4
VMungo0251G0856 Vigna mungo HOM05D008992 ORTHO05D002272 2.6e-50 203.4 305 45.2
TPR.G6214 Trifolium pratense HOM05D008992 ORTHO05D002272 6.4e-49 198.7 245 49.4
Medtr8g089500 Medicago truncatula HOM05D008992 ORTHO05D002272 8.4e-49 198.4 263 46.0
TPR.G6244 Trifolium pratense HOM05D008992 ORTHO05D007974 1.9e-48 197.2 241 49.0
Lj4g0020153 Lotus japonicus HOM05D008992 ORTHO05D002272 2.7e-47 193.4 199 55.8
Medtr8g089530 Medicago truncatula HOM05D008992 ORTHO05D002272 3.0e-46 189.9 240 47.9
Ca_17802_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 1.1e-45 188.0 266 44.7
Psat0s921g0280 Pisum sativum HOM05D008992 ORTHO05D002272 4.4e-42 176.0 252 42.5
Lj1g0000579 Lotus japonicus HOM05D008992 ORTHO05D002272 2.2e-41 173.7 224 49.1
Medtr8g089440 Medicago truncatula HOM05D008992 ORTHO05D002272 2.2e-41 173.7 228 46.9
Medtr8g089480 Medicago truncatula HOM05D008992 ORTHO05D002272 2.2e-41 173.7 228 46.9
Psat0s3155g0080 Pisum sativum HOM05D008992 ORTHO05D002272 2.9e-41 173.3 235 43.0
TPR.G6204 Trifolium pratense HOM05D008992 ORTHO05D002272 8.4e-41 171.8 257 43.2
Lalb_Chr07g0185621 Lupinus albus HOM05D008992 ORTHO05D002272 6.0e-39 165.6 218 45.0
Medtr2g006000 Medicago truncatula HOM05D008992 ORTHO05D002272 6.0e-39 165.6 270 43.0
Psat7g060160 Pisum sativum HOM05D008992 ORTHO05D002272 9.6e-37 158.3 219 41.1
Lalb_Chr07g0190491 Lupinus albus HOM05D008992 ORTHO05D002272 2.0e-34 150.6 181 48.1
arahy.Tifrunner.gnm1.ann1.C8FNMN Arachis hypogaea HOM05D008992 ORTHO05D002272 2.2e-33 147.1 200 45.5
arahy.Tifrunner.gnm1.ann1.1MNX0Y Arachis hypogaea HOM05D008992 ORTHO05D002272 1.1e-32 144.8 200 45.5
Medtr8g089540 Medicago truncatula HOM05D008992 ORTHO05D002272 4.6e-31 139.4 176 50.6
Lalb_Chr12g0204211 Lupinus albus HOM05D008992 ORTHO05D002272 4.8e-28 129.4 198 37.9
TPR.G35385 Trifolium pratense HOM05D008992 ORTHO05D002272 2.4e-27 127.1 183 42.1
Ca_16626_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 1.4e-24 117.9 142 47.2
Hma1.2p1_1114F.1_g258730 Hydrangea macrophylla HOM05D002972 ORTHO05D002272 2.4e-24 117.1 216 34.7
Cpa.g.sc6.181 Carica papaya HOM05D002972 ORTHO05D002272 6.0e-23 112.5 248 31.0
Rhsim08G0123100 Rhododendron simsii HOM05D002972 ORTHO05D002272 8.7e-22 108.6 255 32.5
CSS0037442 Camellia sinensis var. sinensis HOM05D002972 ORTHO05D002272 2.5e-21 107.1 259 29.3
Medtr4g417290 Medicago truncatula HOM05D008992 ORTHO05D002272 3.3e-21 106.7 241 35.3
Thecc.01G020000 Theobroma cacao HOM05D000126 ORTHO05D000085 1.8e-19 100.9 226 34.5
Duzib147G0607 Durio zibethinus HOM05D002972 ORTHO05D002272 3.1e-19 100.1 232 29.3
Medtr4g417280 Medicago truncatula HOM05D000053 ORTHO05D002272 1.2e-18 98.2 259 31.7
Peaxi162Scf00126g10126 Petunia axillaris HOM05D002972 ORTHO05D002272 2.6e-18 97.1 256 30.1
COL.COLO4_22003 Corchorus olitorius HOM05D002972 ORTHO05D002272 5.8e-18 95.9 219 32.0
Duzib264G0210 Durio zibethinus HOM05D000126 ORTHO05D000085 5.8e-18 95.9 217 34.1
Cc07_g10090 Coffea canephora HOM05D002972 ORTHO05D002272 1.0e-17 95.1 229 31.0
Dinv29033 Davidia involucrata HOM05D002972 ORTHO05D002272 1.0e-17 95.1 211 32.2
Sopen03g039260 Solanum pennellii HOM05D002972 ORTHO05D002272 3.8e-17 93.2 184 33.7
Medtr8g089435 Medicago truncatula HOM05D008992 ORTHO05D002272 4.9e-17 92.8 193 33.2
COL.COLO4_31049 Corchorus olitorius HOM05D002972 ORTHO05D002272 6.5e-17 92.4 235 30.6
Peaxi162Scf00015g00238 Petunia axillaris HOM05D002972 ORTHO05D002272 6.5e-17 92.4 238 29.8
CAN.G438.50 Capsicum annuum HOM05D002972 ORTHO05D002272 8.4e-17 92.0 217 30.9
Duzib147G1519 Durio zibethinus HOM05D000126 ORTHO05D000085 1.1e-16 91.7 236 30.9
Gohir.A11G175900 Gossypium hirsutum HOM05D000126 ORTHO05D000085 1.4e-16 91.3 188 32.4
Nitab4.5_0003159g0070 Nicotiana tabacum HOM05D002972 ORTHO05D002272 1.4e-16 91.3 230 31.7
TWI09G0202 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 1.4e-16 91.3 185 28.6
Gorai.007G195600 Gossypium raimondii HOM05D000126 ORTHO05D000085 3.2e-16 90.1 184 33.2
Peaxi162Scf00015g00226 Petunia axillaris HOM05D002972 ORTHO05D002272 3.2e-16 90.1 264 29.9
Lj4A209T44 Lonicera japonica HOM05D002972 ORTHO05D002272 5.5e-16 89.4 220 30.9
PGSC0003DMG400002637 Solanum tuberosum HOM05D002972 ORTHO05D002272 9.3e-16 88.6 213 30.0
Nitab4.5_0003885g0010 Nicotiana tabacum HOM05D002972 ORTHO05D002272 1.2e-15 88.2 275 27.3
Dinv41127 Davidia involucrata HOM05D002972 ORTHO05D002272 2.1e-15 87.4 155 35.5
COL.COLO4_21920 Corchorus olitorius HOM05D000126 ORTHO05D002272 2.7e-15 87.0 234 32.5
Sopen03g039250 Solanum pennellii HOM05D002972 ORTHO05D002272 2.7e-15 87.0 258 28.3
PGSC0003DMG400002638 Solanum tuberosum HOM05D002972 ORTHO05D002272 3.5e-15 86.7 217 28.6
Dinv14511 Davidia involucrata HOM05D002972 ORTHO05D002272 4.6e-15 86.3 136 37.5
AUR62007622 Chenopodium quinoa HOM05D001706 ORTHO05D001789 6.0e-15 85.9 211 28.9
Manes.01G145200 Manihot esculenta HOM05D000126 ORTHO05D000085 2.3e-14 84.0 121 35.5
SalBow6G4808 Salvia bowleyana HOM05D002972 ORTHO05D002272 2.3e-14 84.0 151 31.8
Dinv05661 Davidia involucrata HOM05D002972 ORTHO05D002272 3.0e-14 83.6 152 34.2
Lj4A209T45 Lonicera japonica HOM05D002972 ORTHO05D002272 3.0e-14 83.6 256 27.7
Manes.11G096900 Manihot esculenta HOM05D002972 ORTHO05D002272 8.7e-14 82.0 202 29.7
EL10As8g23886 Beta vulgaris HOM05D002972 ORTHO05D002272 1.1e-13 81.6 307 26.4
CSS0006608 Camellia sinensis var. sinensis HOM05D002972 ORTHO05D002272 1.9e-13 80.9 242 27.3
Solyc03g120360.1 Solanum lycopersicum HOM05D002972 ORTHO05D002272 4.3e-13 79.7 203 28.1
Ciclev10025208m.g Citrus clementina HOM05D000126 ORTHO05D000085 5.7e-13 79.3 105 38.1
Ciclev10028228m.g Citrus clementina HOM05D002972 ORTHO05D002272 7.4e-13 79.0 252 24.2
ClCG02G004020 Citrullus lanatus HOM05D002972 ORTHO05D002272 9.7e-13 78.6 221 26.7
Prupe.8G166700 Prunus persica HOM05D002972 ORTHO05D002272 3.7e-12 76.6 206 28.6
Glyma.08G129502 Glycine max HOM05D008992 ORTHO05D002272 6.3e-12 75.9 105 41.0
QL07p013083 Quercus lobata HOM05D030119 ORTHO05D002272 6.3e-12 75.9 248 28.2
Duzib052G0730 Durio zibethinus HOM05D002972 ORTHO05D002272 8.2e-12 75.5 254 26.8
TWI79G0168 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 1.1e-11 75.1 171 26.9
TWI09G0157 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 2.4e-11 73.9 181 25.4
PGR142G3299 Punica granatum HOM05D002972 ORTHO05D002272 6.9e-11 72.4 279 26.5
Dinv10222 Davidia involucrata HOM05D002972 ORTHO05D002272 1.2e-10 71.6 128 34.4
Hund14010 Selenicereus undatus HOM05D002972 ORTHO05D002272 1.5e-10 71.2 259 25.1
AUR62010852 Chenopodium quinoa HOM05D002972 ORTHO05D002272 2.0e-10 70.9 169 30.2
MELO3C013346.2 Cucumis melo HOM05D002972 ORTHO05D002272 2.6e-10 70.5 181 28.2
Eucgr.I01432 Eucalyptus grandis HOM05D002972 ORTHO05D002272 2.6e-10 70.5 190 28.9
Lalb_Chr06g0163671 Lupinus albus HOM05D002972 ORTHO05D002272 2.6e-10 70.5 183 27.3
COL.COLO4_22001 Corchorus olitorius HOM05D002972 ORTHO05D002272 3.4e-10 70.1 157 31.8
Manes.04G072100 Manihot esculenta HOM05D002972 ORTHO05D002272 3.4e-10 70.1 201 25.9
TWI75G0621 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 5.9e-10 69.3 183 26.2
Eucgr.I01431 Eucalyptus grandis HOM05D002972 ORTHO05D002272 1.0e-09 68.6 163 27.6
Lalb_Chr21g0306941 Lupinus albus HOM05D002972 ORTHO05D002272 1.0e-09 68.6 224 25.9
Medtr2g022010 Medicago truncatula HOM05D008992 ORTHO05D002272 1.0e-09 68.6 101 40.6
QL07p013092 Quercus lobata HOM05D030119 ORTHO05D002272 1.0e-09 68.6 243 25.9
Migut.I00843 Erythranthe guttata HOM05D002972 ORTHO05D002272 1.3e-09 68.2 180 24.4
COL.COLO4_07334 Corchorus olitorius HOM05D002972 ORTHO05D002272 1.7e-09 67.8 187 31.6
Hund14008 Selenicereus undatus HOM05D002972 ORTHO05D002272 1.7e-09 67.8 241 25.3
VMungo1309G1142 Vigna mungo HOM05D002972 ORTHO05D002272 2.2e-09 67.4 177 24.9
Lalb_Chr12g0204191 Lupinus albus HOM05D008992 ORTHO05D002272 2.9e-09 67.0 97 43.3
PGR142G3650 Punica granatum HOM05D002972 ORTHO05D002272 3.8e-09 66.6 121 33.9
Lalb_Chr08g0246731 Lupinus albus HOM05D002972 ORTHO05D002272 5.0e-09 66.2 122 27.9
Cpa.g.sc10.98 Carica papaya HOM05D002972 ORTHO05D002272 8.5e-09 65.5 228 24.1
MELO3C020825.2 Cucumis melo HOM05D002972 ORTHO05D002272 1.1e-08 65.1 152 26.3
Atru.chr5.3374 Acer truncatum HOM05D002972 ORTHO05D002272 1.4e-08 64.7 143 25.2
TWI18G1012 Tripterygium wilfordii HOM05D000555 ORTHO05D000646 1.4e-08 64.7 167 29.3
Phvul.007G019100 Phaseolus vulgaris HOM05D002972 ORTHO05D002272 2.5e-08 63.9 184 23.4
Oeu028335.1 Olea europaea HOM05D000555 ORTHO05D002272 7.2e-08 62.4 140 32.1
VMungo0720G1914 Vigna mungo HOM05D002972 ORTHO05D002272 1.2e-07 61.6 142 25.4
vmacro17724 Vaccinium macrocarpon HOM05D002972 ORTHO05D002272 2.1e-07 60.8 196 27.6
CsaV3_2G016160 Cucumis sativus L. HOM05D002972 ORTHO05D002272 2.7e-07 60.5 229 23.6
Dinv37647 Davidia involucrata HOM05D002972 ORTHO05D002272 2.7e-07 60.5 145 27.6
QL07p012989 Quercus lobata HOM05D030119 ORTHO05D002272 2.7e-07 60.5 237 25.3
Glyma.10G281600 Glycine max HOM05D002972 ORTHO05D002272 3.6e-07 60.1 155 23.9
Glyma.20G107600 Glycine max HOM05D002972 ORTHO05D002272 3.6e-07 60.1 159 25.8
SGA_v2.0_scaffold47G17652 Striga asiatica HOM05D002972 ORTHO05D002272 3.6e-07 60.1 244 25.0
BcaB03g11788 Brassica carinata HOM05D002972 ORTHO05D002272 4.6e-07 59.7 107 28.0
SGA_v2.0_scaffold47G17653 Striga asiatica HOM05D002972 ORTHO05D002272 4.6e-07 59.7 198 24.7
TAR636G2942 Trochodendron aralioides HOM05D000112 ORTHO05D001918 4.6e-07 59.7 226 26.1
TAR374G0968 Trochodendron aralioides HOM05D008992 ORTHO05D002272 6.1e-07 59.3 123 26.8
TAR633G1264 Trochodendron aralioides HOM05D002972 ORTHO05D002272 6.1e-07 59.3 160 29.4
ECA247G0643 Erigeron canadensis HOM05D002069 ORTHO05D002997 7.9e-07 58.9 149 28.9
CARHR294290 Cardamine hirsuta HOM05D002972 ORTHO05D002272 1.0e-06 58.5 157 26.8
Migut.L00029 Erythranthe guttata HOM05D002972 ORTHO05D002272 1.0e-06 58.5 178 24.7
Dinv21340 Davidia involucrata HOM05D002972 ORTHO05D002272 1.3e-06 58.2 187 27.8
CAN.G774.17 Capsicum annuum HOM05D012638 ORTHO05D002272 2.3e-06 57.4 110 30.9
Aa31LG8G14090 Aethionema arabicum HOM05D002972 ORTHO05D002272 3.0e-06 57.0 167 26.9
BraA07t28213Z Brassica rapa HOM05D002972 ORTHO05D002272 3.0e-06 57.0 135 28.9
BcaC01g00847 Brassica carinata HOM05D002972 ORTHO05D002272 5.1e-06 56.2 106 26.4
BcaC06g36191 Brassica carinata HOM05D002972 ORTHO05D002272 5.1e-06 56.2 143 28.7
C03p85160 Brassica napus HOM05D002972 ORTHO05D002272 5.1e-06 56.2 106 26.4
C07p06710 Brassica napus HOM05D002972 ORTHO05D002272 5.1e-06 56.2 143 28.7
BolC3t20805H Brassica oleracea HOM05D002972 ORTHO05D002272 5.1e-06 56.2 106 26.4
BolC7t41094H Brassica oleracea HOM05D002972 ORTHO05D002272 5.1e-06 56.2 143 28.7
CAN.G774.15 Capsicum annuum HOM05D012638 ORTHO05D002272 6.7e-06 55.8 117 29.1
Glyma.04G003100 Glycine max HOM05D002972 ORTHO05D002272 6.7e-06 55.8 185 22.2
BraA08t33603Z Brassica rapa HOM05D002972 ORTHO05D002272 8.7e-06 55.5 106 26.4
ECA247G1059 Erigeron canadensis HOM05D000593 ORTHO05D002268 8.7e-06 55.5 157 26.8


User provided reference genes

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