Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0010337 Lotus japonicus HOM05D000443 ORTHO05D006935 7.8e-48 193.7 118 100.0
Glyma.08G289600 Glycine max HOM05D000443 ORTHO05D006935 4.3e-46 188.0 118 95.8
Glyma.18G134900 Glycine max HOM05D000443 ORTHO05D006935 4.3e-46 188.0 118 95.8
Phvul.003G053800 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 4.3e-46 188.0 118 95.8
VMungo0720G1325 Vigna mungo HOM05D000443 ORTHO05D006935 4.3e-46 188.0 118 95.8
Medtr8g063460 Medicago truncatula HOM05D000443 ORTHO05D006935 5.6e-46 187.6 116 94.8
DCAR_003345 Daucus carota HOM05D000443 ORTHO05D006935 4.0e-44 181.4 118 94.1
arahy.Tifrunner.gnm1.ann1.8Z4KFF Arachis hypogaea HOM05D000443 ORTHO05D006935 1.2e-43 179.9 118 93.2
arahy.Tifrunner.gnm1.ann1.X2RL59 Arachis hypogaea HOM05D000443 ORTHO05D006935 1.2e-43 179.9 118 93.2
arahy.Tifrunner.gnm1.ann1.KHE34K Arachis hypogaea HOM05D000443 ORTHO05D006935 1.5e-43 179.5 118 93.2
arahy.Tifrunner.gnm1.ann1.R1M58Z Arachis hypogaea HOM05D000443 ORTHO05D006935 1.5e-43 179.5 118 93.2
HanXRQChr02g0047201 Helianthus annuus HOM05D000443 ORTHO05D006935 1.5e-43 179.5 118 93.2
THA.LOC104807412 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 1.5e-43 179.5 118 93.2
Actinidia17989 Actinidia chinensis HOM05D000443 ORTHO05D006935 2.0e-43 179.1 118 93.2
Actinidia20580 Actinidia chinensis HOM05D000443 ORTHO05D006935 2.0e-43 179.1 118 93.2
ECA234G1622 Erigeron canadensis HOM05D000443 ORTHO05D006935 2.6e-43 178.7 118 92.4
Dinv41862 Davidia involucrata HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 92.4
ATR0605G139 Amborella trichopoda HOM05D000443 ORTHO05D006935 4.4e-43 177.9 118 92.4
MSTRG.10170 Avicennia marina HOM05D000443 ORTHO05D006935 4.4e-43 177.9 118 92.4
Migut.G00035 Erythranthe guttata HOM05D000443 ORTHO05D006935 4.4e-43 177.9 118 92.4
Lsat_1_v5_gn_8_120620 Lactuca sativa HOM05D000443 ORTHO05D006935 4.4e-43 177.9 118 86.4
Nitab4.5_0000303g0260 Nicotiana tabacum HOM05D000443 ORTHO05D001066 4.4e-43 177.9 118 92.4
Peaxi162Scf00268g00613 Petunia axillaris HOM05D000443 ORTHO05D006935 4.4e-43 177.9 118 92.4
Solyc06g065200.4 Solanum lycopersicum HOM05D000443 ORTHO05D006935 4.4e-43 177.9 118 92.4
Sopen06g023700 Solanum pennellii HOM05D000443 ORTHO05D006935 4.4e-43 177.9 118 92.4
PGSC0003DMG400026106 Solanum tuberosum HOM05D000443 ORTHO05D006935 4.4e-43 177.9 118 92.4
Hund00097 Selenicereus undatus HOM05D000443 ORTHO05D006935 7.5e-43 177.2 118 91.5
CDE05G1952 Ceratophyllum demersum HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 91.5
Lsat_1_v5_gn_4_71260 Lactuca sativa HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 91.5
Cc11_g00630 Coffea canephora HOM05D000443 ORTHO05D006935 1.3e-42 176.4 118 91.5
FAN15G1278 Fragaria x ananassa HOM05D000443 ORTHO05D006935 1.3e-42 176.4 118 91.5
FAN24G1683 Fragaria x ananassa HOM05D000443 ORTHO05D006935 1.3e-42 176.4 118 91.5
FAN27G0741 Fragaria x ananassa HOM05D000443 ORTHO05D006935 1.3e-42 176.4 118 91.5
MD10G1142700 Malus domestica HOM05D000443 ORTHO05D006935 1.3e-42 176.4 118 91.5
Oeu022728.1 Olea europaea HOM05D000443 ORTHO05D006935 1.3e-42 176.4 118 88.1
Oeu029869.1 Olea europaea HOM05D000443 ORTHO05D006935 1.3e-42 176.4 118 91.5
arahy.Tifrunner.gnm1.ann1.5JP8BK Arachis hypogaea HOM05D000443 ORTHO05D006935 1.7e-42 176.0 118 89.0
CAN.G308.68 Capsicum annuum HOM05D000443 ORTHO05D006935 1.7e-42 176.0 118 91.5
Prupe.8G181600 Prunus persica HOM05D000443 ORTHO05D006935 1.7e-42 176.0 118 91.5
CSS0021137 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 2.2e-42 175.6 118 92.4
CSS0037601 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 2.2e-42 175.6 118 92.4
Psat4g127000 Pisum sativum HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 92.4
THA.LOC104804305 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 89.8
Sc08g0002080 Simmondsia chinensis HOM05D000443 ORTHO05D006935 3.7e-42 174.9 118 90.7
A06p34070 Brassica napus HOM05D000443 ORTHO05D006935 4.9e-42 174.5 118 90.7
BraA06t26340Z Brassica rapa HOM05D000443 ORTHO05D006935 4.9e-42 174.5 118 90.7
Aa31LG8G14690 Aethionema arabicum HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 90.7
AL3G50230 Arabidopsis lyrata HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 90.7
AT2G17350 Arabidopsis thaliana HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 90.7
BcaB03g16486 Brassica carinata HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 90.7
BcaB08g34724 Brassica carinata HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 90.7
BcaC01g02933 Brassica carinata HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 90.7
A07p03730 Brassica napus HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 90.7
C03p58190 Brassica napus HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 90.7
BolC3t18088H Brassica oleracea HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 90.7
BraA07t28161Z Brassica rapa HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 90.7
Carub.0003s3138 Capsella rubella HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 90.7
CARHR107480 Cardamine hirsuta HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 90.7
CiPaw.05G094300 Carya illinoinensis HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 90.7
Thhalv10022914m.g Eutrema salsugineum HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 90.7
MD05G1141900 Malus domestica HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 90.7
Sp3g30670 Schrenkiella parvula HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 90.7
Os08g0511800 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 89.8
Ah.01g010320 Amaranthus hybridus HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 89.8
EL10Ac9g21552 Beta vulgaris HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 89.8
AUR62010188 Chenopodium quinoa HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 89.8
AUR62013189 Chenopodium quinoa HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 89.8
BcaC06g36255 Brassica carinata HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 89.8
BolC7t41006H Brassica oleracea HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 89.8
SGA_v2.0_scaffold157G37346 Striga asiatica HOM05D000443 ORTHO05D006935 3.2e-41 171.8 118 89.0
Thecc.02G147500 Theobroma cacao HOM05D000443 ORTHO05D006935 1.6e-40 169.5 118 89.8
SalBow8G0190 Salvia bowleyana HOM05D000443 ORTHO05D006935 2.1e-40 169.1 118 83.9
HPP92_015754 Vanilla planifolia HOM05D000443 ORTHO05D006935 2.7e-40 168.7 118 88.1
TWI31G1377 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 3.5e-40 168.3 118 89.0
CANSAT25G1435 Cannabis sativa HOM05D000443 ORTHO05D006935 4.6e-40 167.9 118 89.0
COL.COLO4_03844 Corchorus olitorius HOM05D000443 ORTHO05D006935 4.6e-40 167.9 118 89.0
Nn8g40373 Nelumbo nucifera HOM05D000443 ORTHO05D006935 4.6e-40 167.9 118 89.0
Pp3c6_23720 Physcomitrium patens HOM05D000443 ORTHO05D006935 4.6e-40 167.9 118 77.1
Manes.15G113600 Manihot esculenta HOM05D000443 ORTHO05D006935 6.0e-40 167.5 118 89.0
PGR142G2097 Punica granatum HOM05D000443 ORTHO05D006935 6.0e-40 167.5 118 89.0
TWI79G0198 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 6.0e-40 167.5 118 89.0
PSO541G4498 Papaver somniferum HOM05D000443 ORTHO05D006935 7.8e-40 167.2 118 87.3
PSO675G5783 Papaver somniferum HOM05D000443 ORTHO05D006935 7.8e-40 167.2 118 87.3
Potri.009G169200 Populus trichocarpa HOM05D000443 ORTHO05D006935 7.8e-40 167.2 118 88.1
Os09g0491692 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 1.0e-39 166.8 118 87.3
Atru.chr5.3573 Acer truncatum HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 89.0
CiPaw.06G114400 Carya illinoinensis HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 89.0
MELO3C015698.2 Cucumis melo HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 89.0
Duzib132G0906 Durio zibethinus HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 89.0
Ciclev10029609m.g Citrus clementina HOM05D000443 ORTHO05D006935 1.7e-39 166.0 118 88.1
Duzib052G0133 Durio zibethinus HOM05D000443 ORTHO05D006935 2.3e-39 165.6 118 88.1
Sed0001438 Sechium edule HOM05D000443 ORTHO05D006935 2.3e-39 165.6 118 88.1
Sed0000770 Sechium edule HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 88.1
unitig_62.g23670 Utricularia gibba HOM05D000443 ORTHO05D006935 3.9e-39 164.9 118 88.1
Hma1.2p1_0271F.1_g108700 Hydrangea macrophylla HOM05D000443 ORTHO05D006935 5.1e-39 164.5 116 87.1
TAR628G1273 Trochodendron aralioides HOM05D000443 ORTHO05D006935 6.6e-39 164.1 118 88.1
Gohir.D02G193500 Gossypium hirsutum HOM05D000443 ORTHO05D006935 8.6e-39 163.7 118 87.3
Gorai.005G216300 Gossypium raimondii HOM05D000443 ORTHO05D006935 8.6e-39 163.7 118 87.3
Zm00001eb316840 Zea mays HOM05D000443 ORTHO05D006935 8.6e-39 163.7 118 85.6
Aqoxy6G01540 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 3.3e-38 161.8 118 87.3
vmacro20019 Vaccinium macrocarpon HOM05D000443 ORTHO05D006935 5.6e-38 161.0 118 85.6
Gohir.A03G170400 Gossypium hirsutum HOM05D000443 ORTHO05D006935 9.5e-38 160.2 118 85.6
Haze_01963 Corylus avellana HOM05D000037 ORTHO05D000150 5.2e-36 154.5 150 62.0
AagrBONN_evm.TU.Sc2ySwM_369.59 Anthoceros agrestis HOM05D000443 ORTHO05D006935 2.6e-35 152.1 118 81.4
Pp3c16_14160 Physcomitrium patens HOM05D000443 ORTHO05D006935 3.4e-35 151.8 116 75.9
AagrBONN_evm.TU.Sc2ySwM_362.658 Anthoceros agrestis HOM05D000443 ORTHO05D006935 9.9e-35 150.2 116 81.0
Ah.01g017680 Amaranthus hybridus HOM05D000443 ORTHO05D006935 2.2e-34 149.1 118 81.4
RcHm_v2.0_Chr6g0281161 Rosa chinensis HOM05D000443 ORTHO05D006935 3.2e-33 145.2 101 91.1
HPP92_018958 Vanilla planifolia HOM05D000443 ORTHO05D006935 4.6e-32 141.4 103 87.4
ClCG02G003280 Citrullus lanatus HOM05D000443 ORTHO05D006935 7.8e-32 140.6 104 88.5
Manes.03G097000 Manihot esculenta HOM05D000443 ORTHO05D006935 1.5e-30 136.3 101 88.1
Sabra09G0131200 Salix brachista HOM05D000037 ORTHO05D004802 1.5e-30 136.3 102 87.3
CsaV3_7G002090 Cucumis sativus L. HOM05D000037 ORTHO05D000150 3.3e-30 135.2 101 88.1
Lalb_Chr05g0227911 Lupinus albus HOM05D000443 ORTHO05D006935 1.2e-29 133.3 102 85.3
SMO358G0470 Selaginella moellendorffii HOM05D000443 ORTHO05D006935 5.2e-28 127.9 118 71.2
Psat4g126920 Pisum sativum HOM05D000443 ORTHO05D006935 6.9e-28 127.5 92 88.0
CBR_g20399 Chara braunii HOM05D000443 ORTHO05D006935 1.7e-26 122.9 108 70.4
Cc09_g10900 Coffea canephora HOM05D000443 ORTHO05D006935 1.4e-25 119.8 90 85.6
THA.LOC104804551 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 3.2e-25 118.6 92 82.6
GSVIVG01011124001 Vitis vinifera HOM05D000443 ORTHO05D006935 7.1e-25 117.5 90 85.6
Mapoly0106s0018 Marchantia polymorpha HOM05D000443 ORTHO05D006935 1.3e-23 113.2 118 66.9
Ca_14680_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 6.6e-23 110.9 60 100.0
Migut.G00034 Erythranthe guttata HOM05D000443 ORTHO05D006935 3.3e-22 108.6 99 65.7
ClCG02G010820 Citrullus lanatus HOM05D000443 ORTHO05D006935 7.3e-22 107.5 119 58.0
QL11p056627 Quercus lobata HOM05D000443 ORTHO05D006935 1.6e-21 106.3 60 95.0
Lj9A408T89 Lonicera japonica HOM05D000443 ORTHO05D006935 2.8e-21 105.5 60 93.3
Ca_13829_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 1.1e-20 103.6 60 95.0
MD05G1142800 Malus domestica HOM05D000443 ORTHO05D006935 1.1e-20 103.6 60 91.7
ATR0329G054 Amborella trichopoda HOM05D000443 ORTHO05D006935 4.0e-20 101.7 60 90.0
FvH4_2g16970 Fragaria vesca HOM05D000443 ORTHO05D006935 6.9e-20 100.9 58 91.4
ATR0329G065 Amborella trichopoda HOM05D000443 ORTHO05D006935 2.0e-19 99.4 60 88.3
TPR.G26885 Trifolium pratense HOM05D000443 ORTHO05D006935 5.4e-17 91.3 60 88.3
Lj9A408T88 Lonicera japonica HOM05D000443 ORTHO05D006935 7.1e-17 90.9 46 97.8
TPR.G669 Trifolium pratense HOM05D000443 ORTHO05D006935 9.3e-17 90.5 46 97.8
MELO3C013484.2 Cucumis melo HOM05D000443 ORTHO05D006935 2.7e-16 89.0 117 45.3
Nitab4.5_0001082g0080 Nicotiana tabacum HOM05D000443 ORTHO05D001066 2.7e-16 89.0 46 95.7
Aqoxy6G01539 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 2.3e-15 85.9 46 91.3
CsaV3_6G010030 Cucumis sativus L. HOM05D000443 ORTHO05D006935 2.3e-15 85.9 120 45.0
CBR_g764 Chara braunii HOM05D000443 ORTHO05D006935 5.6e-14 81.3 46 84.8
Zm00001eb288990 Zea mays HOM05D000443 ORTHO05D006935 2.1e-13 79.3 96 64.6
Phvul.010G144400 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 5.3e-12 74.7 47 85.1


User provided reference genes

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