Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 1.7e-152 542.7 292 100.0
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 9.1e-90 334.3 262 73.3
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 4.0e-85 318.9 257 72.0
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 8.8e-85 317.8 283 66.4
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 3.3e-79 299.3 286 65.0
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 1.6e-78 297.0 275 65.8
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 1.2e-68 264.2 269 63.9
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 4.9e-67 258.8 244 66.8
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 7.0e-66 255.0 234 61.5
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 1.6e-65 253.8 244 61.9
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 1.6e-65 253.8 244 61.9
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 4.0e-61 239.2 258 56.2
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 1.9e-58 230.3 269 56.5
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 6.0e-57 225.3 212 65.6
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 7.8e-57 224.9 208 63.5
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 5.1e-56 222.2 224 58.5
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 7.3e-55 218.4 262 55.3
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 4.7e-54 215.7 239 57.3
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 6.2e-54 215.3 232 55.6
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 2.3e-53 213.4 258 52.3
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 5.2e-53 212.2 292 52.7
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 5.2e-53 212.2 294 49.0
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 6.8e-53 211.8 209 60.3
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 8.9e-53 211.5 231 58.0
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 1.5e-52 210.7 301 50.5
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 2.0e-52 210.3 205 62.0
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 2.0e-52 210.3 204 61.3
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 2.6e-52 209.9 270 52.6
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 5.8e-52 208.8 286 52.4
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 5.8e-52 208.8 267 50.2
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 9.9e-52 208.0 286 51.4
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 9.9e-52 208.0 231 57.1
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 9.9e-52 208.0 272 50.0
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 9.9e-52 208.0 286 50.3
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 1.3e-51 207.6 266 50.8
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 1.7e-51 207.2 209 60.3
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 1.7e-51 207.2 207 60.9
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 2.2e-51 206.8 291 50.2
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 4.9e-51 205.7 272 54.0
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 6.4e-51 205.3 213 56.3
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.4e-50 204.1 270 51.9
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 2.4e-50 203.4 265 52.5
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 9.2e-50 201.4 211 55.5
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 9.2e-50 201.4 244 52.9
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 9.2e-50 201.4 260 51.9
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 9.2e-50 201.4 243 53.5
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 1.6e-49 200.7 266 52.3
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.6e-49 200.7 266 52.3
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.6e-49 200.7 234 54.3
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 2.7e-49 199.9 243 52.7
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 6.0e-49 198.7 215 58.1
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 7.8e-49 198.4 210 58.6
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 7.8e-49 198.4 210 59.0
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 1.0e-48 198.0 197 58.9
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.3e-48 196.8 273 51.3
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 2.3e-48 196.8 210 58.6
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 2.3e-48 196.8 252 52.8
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 5.1e-48 195.7 237 54.4
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 6.6e-48 195.3 211 58.8
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 8.6e-48 194.9 278 48.9
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.1e-47 194.5 246 50.4
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 1.9e-47 193.7 215 56.7
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.9e-47 193.7 216 54.2
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.2e-46 191.0 249 51.0
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 8.1e-46 188.3 250 49.2
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 1.1e-45 188.0 285 46.3
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.4e-45 187.6 264 48.1
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 2.4e-45 186.8 161 67.1
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 2.4e-45 186.8 342 39.5
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 3.1e-45 186.4 213 55.9
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 4.0e-45 186.0 286 46.9
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 5.2e-45 185.7 262 48.1
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 6.9e-45 185.3 238 51.7
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 6.9e-45 185.3 270 49.6
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 8.9e-45 184.9 270 47.8
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 8.9e-45 184.9 212 55.2
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 8.9e-45 184.9 229 50.2
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 1.2e-44 184.5 231 51.5
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 1.2e-44 184.5 275 49.1
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 2.0e-44 183.7 238 51.3
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.0e-44 183.7 196 59.2
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 3.4e-44 183.0 232 50.9
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 5.8e-44 182.2 159 65.4
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 1.3e-43 181.0 215 52.1
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 2.9e-43 179.9 215 51.6
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 6.4e-43 178.7 214 51.4
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 1.1e-42 177.9 217 54.8
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 1.4e-42 177.6 265 48.3
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 4.2e-42 176.0 211 53.1
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 5.4e-42 175.6 219 50.7
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 5.4e-42 175.6 232 49.1
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 7.1e-42 175.3 209 51.7
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 7.1e-42 175.3 215 54.0
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 9.3e-42 174.9 269 45.0
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 9.3e-42 174.9 209 51.7
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 1.6e-41 174.1 296 44.9
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 1.6e-41 174.1 296 44.9
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 2.7e-41 173.3 218 51.8
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 3.5e-41 172.9 398 35.2
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 4.6e-41 172.6 252 48.4
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 7.8e-41 171.8 246 48.8
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 7.8e-41 171.8 167 61.1
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.0e-40 171.4 235 48.5
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 1.7e-40 170.6 287 42.5
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 1.7e-40 170.6 208 51.9
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 1.5e-39 167.5 161 62.1
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 4.3e-39 166.0 197 53.3
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 7.3e-39 165.2 282 42.9
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.3e-38 164.5 218 49.5
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 1.1e-37 161.4 141 65.2
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 2.4e-37 160.2 115 74.8
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 9.0e-37 158.3 224 47.3
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 9.0e-37 158.3 361 37.1
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 2.0e-36 157.1 132 65.9
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.6e-36 156.8 132 67.4
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 2.2e-35 153.7 265 43.8
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 2.9e-35 153.3 227 44.1
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 4.9e-35 152.5 252 42.9
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.9e-34 150.6 207 51.2
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 3.2e-34 149.8 206 47.6
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 9.3e-34 148.3 110 72.7
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 1.8e-32 144.1 156 59.0
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 1.9e-31 140.6 128 61.7
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 9.6e-31 138.3 226 42.5
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 8.1e-30 135.2 111 67.6
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.1e-29 134.8 202 46.0
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 1.1e-29 134.8 157 51.6
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 5.8e-28 129.0 189 48.7
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 9.3e-26 121.7 88 73.9
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 6.0e-25 119.0 108 64.8
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 5.1e-24 115.9 189 44.4
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 8.2e-22 108.6 128 56.2
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 3.1e-21 106.7 103 58.3
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 2.9e-19 100.1 131 48.1
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.9e-18 97.4 91 63.7
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 3.5e-17 93.2 209 36.4
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 4.6e-17 92.8 149 37.6
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 1.3e-16 91.3 106 49.1
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 1.9e-15 87.4 61 80.3
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 3.3e-15 86.7 61 77.0
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 9.7e-15 85.1 201 34.3
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 1.3e-14 84.7 162 39.5
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.7e-14 83.2 106 54.7
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.5e-12 77.8 61 63.9
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 7.6e-12 75.5 109 48.6
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.4e-10 71.2 46 82.6
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 7.9e-09 65.5 106 46.2
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.3e-08 63.9 49 73.5


User provided reference genes

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