Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 2.3e-37 158.3 75 100.0
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 8.2e-27 123.2 66 83.3
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 1.8e-26 122.1 69 87.0
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 2.4e-26 121.7 69 82.6
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 1.2e-25 119.4 69 82.6
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 1.4e-23 112.5 68 77.9
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 1.6e-22 109.0 56 89.3
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 2.7e-22 108.2 63 82.5
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 2.7e-22 108.2 55 89.1
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 3.6e-22 107.8 66 78.8
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 8.0e-22 106.7 63 82.5
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.4e-21 105.9 60 80.0
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 8.8e-21 103.2 56 83.9
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 1.5e-20 102.4 64 75.0
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 1.5e-20 102.4 57 80.7
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 2.0e-20 102.1 55 83.6
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 2.0e-20 102.1 63 74.6
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 7.4e-20 100.1 55 83.6
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 7.4e-20 100.1 54 85.2
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 7.4e-20 100.1 56 80.4
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 7.4e-20 100.1 56 80.4
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 9.7e-20 99.8 58 81.0
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 9.7e-20 99.8 58 79.3
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 9.7e-20 99.8 58 79.3
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 9.7e-20 99.8 53 84.9
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 9.7e-20 99.8 53 84.9
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 9.7e-20 99.8 53 84.9
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 9.7e-20 99.8 66 71.2
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 1.3e-19 99.4 65 72.3
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 1.3e-19 99.4 63 76.2
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 1.7e-19 99.0 59 76.3
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 2.2e-19 98.6 69 68.1
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 3.7e-19 97.8 55 76.4
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 3.7e-19 97.8 57 78.9
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 3.7e-19 97.8 56 76.8
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 4.8e-19 97.4 52 86.5
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 4.8e-19 97.4 52 86.5
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 4.8e-19 97.4 61 77.0
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 4.8e-19 97.4 61 77.0
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 4.8e-19 97.4 66 72.7
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 6.3e-19 97.1 58 77.6
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 6.3e-19 97.1 58 77.6
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 6.3e-19 97.1 65 70.8
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 1.1e-18 96.3 62 72.6
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 1.4e-18 95.9 67 70.1
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 1.8e-18 95.5 63 71.4
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 3.1e-18 94.7 61 72.1
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 3.1e-18 94.7 64 68.8
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 4.1e-18 94.4 60 73.3
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 7.0e-18 93.6 60 71.7
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 9.1e-18 93.2 57 71.9
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 9.1e-18 93.2 57 71.9
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 9.1e-18 93.2 55 76.4
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.2e-17 92.8 48 85.4
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 1.6e-17 92.4 57 70.2
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.6e-17 92.4 54 77.8
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 2.0e-17 92.0 58 75.9
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 2.0e-17 92.0 54 75.9
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.6e-17 91.7 48 85.4
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 2.6e-17 91.7 56 76.8
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 2.6e-17 91.7 54 75.9
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 2.6e-17 91.7 54 75.9
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 2.6e-17 91.7 54 75.9
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 2.6e-17 91.7 55 76.4
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 3.5e-17 91.3 57 70.2
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 3.5e-17 91.3 57 70.2
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 3.5e-17 91.3 54 74.1
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 4.5e-17 90.9 54 74.1
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 4.5e-17 90.9 60 65.0
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 5.9e-17 90.5 46 87.0
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 7.7e-17 90.1 64 60.9
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 7.7e-17 90.1 57 73.7
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 1.0e-16 89.7 57 70.2
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 1.0e-16 89.7 59 67.8
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 1.0e-16 89.7 57 68.4
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 1.3e-16 89.4 57 66.7
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 1.3e-16 89.4 63 68.3
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 1.7e-16 89.0 54 75.9
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.7e-16 89.0 52 78.8
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 1.7e-16 89.0 62 69.4
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 1.7e-16 89.0 60 65.0
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 2.2e-16 88.6 51 76.5
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 2.2e-16 88.6 56 69.6
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 2.2e-16 88.6 56 67.9
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 2.9e-16 88.2 61 67.2
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 2.9e-16 88.2 61 67.2
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 2.9e-16 88.2 61 67.2
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 2.9e-16 88.2 61 67.2
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 2.9e-16 88.2 64 64.1
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 3.8e-16 87.8 59 66.1
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 3.8e-16 87.8 59 66.1
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 3.8e-16 87.8 59 66.1
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 3.8e-16 87.8 59 66.1
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 3.8e-16 87.8 59 66.1
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 5.0e-16 87.4 58 70.7
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 6.5e-16 87.0 59 64.4
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 6.5e-16 87.0 56 67.9
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 8.5e-16 86.7 56 67.9
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 8.5e-16 86.7 69 65.2
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 1.1e-15 86.3 60 61.7
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 1.1e-15 86.3 56 64.3
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 1.9e-15 85.5 59 67.8
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 7.2e-15 83.6 54 70.4
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 9.4e-15 83.2 51 72.5
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 2.7e-14 81.6 50 72.0
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 4.7e-14 80.9 62 64.5
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 1.0e-13 79.7 51 64.7
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.8e-13 79.0 62 62.9
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 1.8e-13 79.0 40 90.0
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 3.0e-13 78.2 53 66.0
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 3.0e-13 78.2 50 64.0
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 2.6e-12 75.1 57 61.4
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 7.5e-12 73.6 55 63.6
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 1.3e-11 72.8 39 82.1
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.3e-11 72.8 50 64.0
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 2.8e-11 71.6 46 67.4
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 4.8e-11 70.9 40 80.0
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 1.1e-10 69.7 41 73.2
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 1.8e-10 68.9 61 49.2
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 1.6e-09 65.9 62 46.8
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 1.6e-09 65.9 59 54.2
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 1.6e-09 65.9 59 54.2
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 5.9e-09 63.9 48 56.2
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 7.7e-09 63.5 50 56.0
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 8.5e-08 60.1 62 43.5
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 1.5e-07 59.3 39 66.7
Zm00001eb341140 Zea mays HOM05D005857 ORTHO05D007193 1.6e-06 55.8 50 56.0
Actinidia00143 Actinidia chinensis HOM05D005857 ORTHO05D007193 2.1e-06 55.5 36 75.0
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 2.1e-06 55.5 30 76.7


User provided reference genes

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