Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 0.0e+00 1351.7 672 100.0
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 0.0e+00 1093.2 664 82.7
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 0.0e+00 1080.1 672 80.4
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 1.5e-308 1062.4 672 79.8
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 1.0e-306 1056.2 682 79.6
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 3.0e-306 1054.7 665 79.1
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 8.9e-306 1053.1 683 79.5
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 2.0e-305 1052.0 672 79.2
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 2.9e-304 1048.1 665 78.9
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 2.4e-303 1045.0 669 79.4
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 8.0e-299 1030.0 673 77.4
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 1.0e-285 986.5 714 72.0
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 1.1e-263 913.3 664 69.1
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 6.6e-261 904.0 665 67.7
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 1.8e-258 896.0 668 67.5
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 1.4e-255 886.3 659 67.7
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 1.9e-255 885.9 667 66.4
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 3.5e-254 881.7 673 64.9
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.8e-253 879.4 668 65.4
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 3.9e-253 878.2 664 66.0
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 6.7e-253 877.5 673 64.8
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 3.3e-252 875.2 661 66.7
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 2.8e-251 872.1 663 65.6
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 1.8e-250 869.4 655 65.5
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 6.5e-248 860.9 649 66.6
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 6.5e-248 860.9 619 69.1
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 5.5e-247 857.8 664 66.4
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 1.3e-245 853.2 670 63.4
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 1.5e-244 849.7 673 64.9
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 1.0e-240 837.0 664 62.5
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 3.6e-238 828.6 648 64.0
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 6.1e-238 827.8 654 61.8
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 1.1e-236 823.5 660 62.7
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 1.9e-236 822.8 676 63.0
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 9.7e-236 820.5 725 61.1
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 1.3e-235 820.1 654 63.0
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 8.2e-235 817.4 661 62.2
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 2.6e-233 812.4 665 62.4
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 3.4e-233 812.0 696 59.1
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 3.4e-233 812.0 652 63.5
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 1.0e-232 810.4 672 62.9
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 1.7e-232 809.7 666 62.0
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 1.7e-232 809.7 669 61.6
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 8.5e-232 807.4 663 61.7
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 8.5e-232 807.4 669 61.6
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 3.2e-231 805.4 657 62.1
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 2.7e-230 802.4 674 62.8
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 7.9e-230 800.8 648 63.3
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 1.0e-229 800.4 669 62.2
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 3.9e-229 798.5 672 60.6
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 6.7e-229 797.7 649 63.0
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 2.0e-228 796.2 661 61.7
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 8.2e-227 790.8 665 61.7
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 8.2e-227 790.8 658 61.1
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.1e-226 790.4 747 54.6
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 6.5e-224 781.2 652 61.0
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 6.5e-224 781.2 670 59.6
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 5.5e-223 778.1 663 59.4
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 9.4e-223 777.3 670 59.7
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 5.7e-220 768.1 671 59.6
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 1.3e-219 766.9 672 59.7
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 1.7e-219 766.5 677 58.9
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 1.1e-218 763.8 654 61.9
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 7.0e-218 761.1 654 59.5
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 1.5e-212 743.4 664 57.7
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 9.7e-212 740.7 686 56.1
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 1.4e-210 736.9 708 54.5
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 9.1e-210 734.2 653 57.6
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 1.2e-209 733.8 670 56.7
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 5.9e-209 731.5 686 56.3
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 2.2e-208 729.6 670 56.3
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 3.8e-208 728.8 667 57.0
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 8.5e-208 727.6 674 56.5
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 8.0e-206 721.1 683 54.9
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 3.0e-205 719.2 669 55.6
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 4.0e-205 718.8 683 54.8
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 1.2e-204 717.2 668 56.4
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 3.4e-204 715.7 681 54.9
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 7.5e-204 714.5 670 55.5
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 4.8e-203 711.8 511 68.1
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 1.2e-198 697.2 654 58.0
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 8.0e-198 694.5 522 68.0
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 2.3e-197 693.0 683 57.2
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 2.3e-197 693.0 654 56.0
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 3.3e-191 672.5 519 65.3
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 1.2e-190 670.6 664 55.4
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 7.5e-188 661.4 644 54.5
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 3.9e-184 649.0 479 68.5
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 1.2e-180 637.5 655 52.8
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 8.9e-173 611.3 655 51.5
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 3.9e-168 595.9 672 48.7
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 2.6e-164 583.2 524 59.9
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 1.9e-159 567.0 518 59.7
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 3.8e-147 526.2 659 45.2
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 5.4e-146 522.3 647 45.1
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 9.0e-133 478.4 410 61.2
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 6.7e-120 435.6 647 38.9
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 1.1e-111 408.3 658 37.5
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 3.5e-100 370.2 398 52.5
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 2.6e-95 354.0 642 39.4
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 4.2e-90 336.7 251 69.3
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 6.3e-78 296.2 474 39.0
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 3.0e-72 277.3 548 35.9
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.0e-51 209.1 231 47.6
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.6e-49 201.8 183 53.0
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 6.0e-44 183.3 145 62.1
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 9.9e-39 166.0 404 31.2
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 2.3e-35 154.8 99 72.7
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 3.1e-32 144.4 240 36.2
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 2.1e-28 131.7 92 66.3
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 6.7e-27 126.7 87 69.0
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 8.1e-25 119.8 108 51.9
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 2.9e-22 111.3 150 42.0
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 2.4e-21 108.2 116 54.3
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 3.1e-16 91.3 65 63.1
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 1.9e-13 82.0 64 62.5
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 1.9e-13 82.0 74 59.5
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 3.9e-11 74.3 83 53.0
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 2.5e-10 71.6 100 44.0
Glyma.14G110000 Glycine max HOM05D006559 ORTHO05D214058 9.0e-08 63.2 35 77.1


User provided reference genes

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