Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 0.0e+00 1214.1 611 100.0
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 0.0e+00 1114.8 611 92.0
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 0.0e+00 1109.0 611 92.0
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 0.0e+00 1095.9 611 90.8
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 0.0e+00 1095.5 611 91.0
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 3.0e-308 1061.2 606 87.5
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 1.2e-298 1029.2 594 87.0
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 1.2e-293 1012.7 607 84.3
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.8e-281 972.2 609 80.5
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 1.7e-279 965.7 603 80.3
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 8.4e-279 963.4 603 80.6
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 2.4e-278 961.8 609 81.8
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.9e-275 952.2 602 80.7
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 4.8e-274 947.6 611 78.6
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 2.4e-273 945.3 606 78.9
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 5.3e-273 944.1 581 83.0
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 2.6e-272 941.8 607 78.3
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.8e-271 937.9 606 77.7
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 6.4e-271 937.2 578 82.5
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 8.4e-271 936.8 606 77.7
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 2.4e-270 935.3 593 79.9
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 5.5e-270 934.1 586 81.4
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 7.1e-270 933.7 601 79.4
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.7e-269 931.8 601 78.5
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 4.6e-269 931.0 603 78.1
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 6.0e-269 930.6 607 78.1
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.1e-267 926.4 610 77.7
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 1.9e-267 925.6 611 76.8
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 7.4e-267 923.7 586 80.7
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 9.6e-267 923.3 608 76.6
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 1.6e-266 922.5 602 77.6
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 1.8e-265 919.1 615 77.4
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.5e-264 916.0 596 78.4
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 1.5e-264 916.0 597 78.7
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 2.0e-264 915.6 592 79.1
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 2.6e-264 915.2 609 76.8
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 3.4e-264 914.8 584 80.1
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 1.7e-263 912.5 609 79.5
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 3.8e-263 911.4 606 76.9
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 8.4e-263 910.2 604 76.7
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 8.4e-263 910.2 585 80.0
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 7.1e-262 907.1 561 81.5
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 9.3e-262 906.7 579 80.1
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 2.7e-261 905.2 558 81.7
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.7e-261 905.2 585 79.5
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 6.0e-261 904.0 606 76.6
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 7.9e-261 903.7 606 76.1
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.3e-260 902.9 579 79.6
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 2.3e-260 902.1 606 76.4
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 2.3e-260 902.1 607 75.5
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 3.9e-260 901.4 585 79.1
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 8.7e-260 900.2 600 75.8
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 8.7e-260 900.2 603 76.1
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.1e-259 899.8 607 75.5
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 3.3e-259 898.3 594 75.8
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 3.3e-259 898.3 531 86.6
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.3e-258 896.3 586 79.2
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 1.6e-258 896.0 578 78.2
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 2.2e-258 895.6 606 75.9
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 6.3e-258 894.0 606 75.4
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 1.8e-257 892.5 604 75.2
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 9.0e-257 890.2 606 76.4
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.5e-256 889.4 579 78.8
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 3.4e-256 888.3 604 74.8
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.0e-255 886.7 599 77.3
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 5.5e-254 880.9 605 75.4
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.2e-254 880.6 620 74.4
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 9.3e-254 880.2 614 74.4
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 4.6e-253 877.9 583 77.9
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 7.9e-253 877.1 593 76.6
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.8e-252 875.9 606 75.4
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 6.7e-252 874.0 620 74.2
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 8.7e-252 873.6 601 75.4
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.1e-251 873.2 620 74.4
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 7.4e-251 870.5 578 76.1
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 1.3e-250 869.8 580 76.6
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 1.7e-250 869.4 604 73.8
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 2.2e-250 869.0 603 75.0
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.6e-245 852.8 582 74.7
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 2.1e-245 852.4 520 82.3
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 1.4e-244 849.7 602 72.8
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 2.3e-244 849.0 542 79.3
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.0e-239 833.6 609 72.1
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 3.8e-239 831.6 541 78.6
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 3.8e-239 831.6 608 72.0
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 3.2e-238 828.6 603 72.3
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 4.2e-238 828.2 577 73.0
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.6e-237 826.2 601 73.2
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.0e-236 823.5 578 73.4
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 3.0e-236 822.0 580 74.1
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.7e-234 816.2 570 74.9
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 2.8e-234 815.5 649 66.3
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 8.2e-234 813.9 572 74.7
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.1e-233 813.5 571 73.7
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 4.1e-233 811.6 577 72.1
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 4.1e-233 811.6 603 70.6
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 3.5e-232 808.5 609 69.5
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 1.3e-231 806.6 597 71.4
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 3.8e-231 805.1 597 71.2
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.1e-230 803.5 572 74.1
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 1.5e-230 803.1 597 71.0
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 1.5e-230 803.1 577 73.1
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 4.2e-230 801.6 573 74.2
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 9.4e-230 800.4 577 72.8
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 2.7e-229 798.9 610 70.5
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.7e-229 798.9 600 69.5
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 8.0e-229 797.3 609 69.3
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 8.0e-229 797.3 597 70.2
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 8.0e-229 797.3 597 70.2
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 3.0e-228 795.4 572 73.4
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.5e-227 793.1 589 71.3
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 4.4e-227 791.6 612 67.6
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.8e-225 786.2 611 68.2
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 9.1e-225 783.9 589 71.5
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 4.5e-224 781.6 582 69.9
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 7.7e-224 780.8 606 69.3
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 1.0e-223 780.4 587 71.4
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 1.0e-223 780.4 587 71.4
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 5.7e-219 764.6 580 70.2
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 7.2e-214 747.7 535 71.8
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 1.2e-213 746.9 593 69.0
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 1.0e-212 743.8 554 71.7
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 1.4e-212 743.4 525 72.6
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 4.0e-212 741.9 597 64.8
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.7e-211 738.0 571 67.6
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.3e-210 736.9 582 67.2
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.7e-207 726.5 557 67.1
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.9e-206 723.0 519 71.9
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 7.3e-206 721.1 575 66.4
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 2.0e-203 713.0 594 62.5
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 1.1e-201 707.2 525 69.0
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 1.2e-200 703.7 420 82.9
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.3e-198 695.3 527 67.7
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.6e-197 693.3 527 67.6
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.1e-197 693.0 527 67.2
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 4.7e-197 691.8 565 66.9
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 8.9e-196 687.6 606 62.0
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 4.4e-195 685.3 410 82.2
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 3.7e-194 682.2 407 83.0
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 7.0e-193 677.9 414 82.4
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.4e-188 663.7 540 64.3
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.2e-187 660.6 495 67.5
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 7.1e-185 651.4 514 66.3
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.3e-183 647.1 528 63.1
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.9e-169 600.1 460 70.9
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.5e-166 590.5 595 53.1
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 4.5e-155 552.4 379 74.7
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 4.3e-150 535.8 476 57.8
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 4.5e-147 525.8 524 56.9
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 7.7e-139 498.4 336 75.9
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.3e-134 483.0 340 74.7
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.4e-131 473.0 457 57.3
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 2.8e-101 373.6 239 77.8
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 4.0e-71 273.5 157 87.3
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 1.0e-66 258.8 145 89.0
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 2.1e-48 198.0 163 61.3
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 3.6e-48 197.2 165 60.0
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 2.0e-46 191.4 162 59.9
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 1.3e-45 188.7 162 59.3
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 4.2e-36 157.1 98 79.6
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 1.6e-35 155.2 123 65.0
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.3e-26 124.8 94 69.1
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.3e-24 119.0 94 67.0
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.4e-22 110.9 318 28.6
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 5.9e-22 110.2 115 53.9
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.9e-19 99.8 273 28.2
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 1.0e-18 99.4 60 81.7
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.3e-17 94.4 283 26.1
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 2.8e-16 91.3 86 55.8
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.4e-15 89.0 185 35.1
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 2.4e-15 88.2 123 39.0
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 6.5e-13 80.1 78 62.8
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 2.5e-12 78.2 70 67.1
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.4e-09 67.4 74 56.8
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.4e-07 62.4 69 53.6
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 1.8e-07 62.0 54 53.7


User provided reference genes

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